def retry_transaction(self, transaction_id):
"""
:type transaction_id: str
:rtype: Transaction
"""
results, _ = self._patch("{endpoint}/{identifier}".format(
endpoint=self._BASE_ENDPOINT, identifier=transaction_id))
result = self._render_single_result(results, as_data_frame=False)
return Transaction.fromJsonDict(result) if result else None
def post_exit_questionaire_cancer(self, exit_questionaire, params={}):
"""
:type exit_questionaire: ExitQuestionnaireInjectCancer
:type params: dict
:rtype: Transaction
"""
results, _ = self._post(self._EXIT_QUESTIONAIRES_CANCER_POST,
exit_questionaire.toJsonDict(), params)
result = self._render_single_result(results, as_data_frame=False)
return Transaction.fromJsonDict(result) if result else None
def post_clinical_report(self, candidate_variant, params={}):
"""
:type candidate_variant: ClinicalReportInject
:type params: dict
:rtype: Transaction
"""
results, _ = self._post(self._CLINICAL_REPORT_POST,
candidate_variant.toJsonDict(), params)
result = self._render_single_result(results, as_data_frame=False)
return Transaction.fromJsonDict(result) if result else None
def post_interpreted_genome(self, tiered_variant, params={}):
"""
:type tiered_variant: InterpretedGenomeInject
:type params: dict
:rtype: Transaction
"""
results, _ = self._post(self._INTERPRETED_GENOME_POST,
tiered_variant.toJsonDict(), params)
result = self._render_single_result(results, as_data_frame=False)
return Transaction.fromJsonDict(result) if result else None
def post_participant(self, participant, params={}):
"""
:type participant: CancerParticipantInject
:type params: dict
:rtype: Transaction
"""
results, _ = self._post(self._PARTICIPANT_POST,
participant.toJsonDict(), params)
result = self._render_single_result(results, as_data_frame=False)
return Transaction.fromJsonDict(result) if result else None
def post_pedigree(self, pedigree, params={}):
"""
:type pedigree: PedigreeInjectRD
:type params: dict
:rtype: Transaction
"""
results, _ = self._post(self._PEDIGREE_POST, pedigree.toJsonDict(),
params)
result = self._render_single_result(results, as_data_frame=False)
return Transaction.fromJsonDict(result) if result else None
def post_variant_interpretation_log(self,
variant_interpretation_log,
params={}):
"""
:param variant_interpretation_log:
:param params:
:rtype: Transaction
"""
results, _ = self._post(self._VARIANT_INTERPRETATION_LOG,
variant_interpretation_log.toJsonDict(),
params)
result = self._render_single_result(results, as_data_frame=False)
return Transaction.fromJsonDict(result) if result else None