def path_with_directories_and_file(tmp_path_factory):
test_path = tmp_path_factory.mktemp("directories_with_file")
existing_dir = test_path / EXISTING_DIRNAME
non_existing_dir = test_path / NON_EXISTING_DIRNAME
existing_dir.mkdir()
d_content = {
str(existing_dir.resolve()): {
"comment": "test123"
},
str(non_existing_dir.resolve()): {
"comment": "bla"
},
}
d_expect = [
{
"directory": str(existing_dir.resolve()),
"comment": "test123",
"exists": True,
},
{
"directory": str(non_existing_dir.resolve()),
"comment": "bla",
"exists": False,
},
]
home.cfg = get_config(test_path)
with open(home.cfg.directories_file, "w") as dfile:
yaml.dump(d_content, dfile)
return test_path, d_expect
def test_get_current_location(prov_files, test_filenames, prov_path_with_agents):
provit.prov.cfg = get_config(prov_path_with_agents)
prov = provit.prov.Provenance(prov_files / test_filenames["TEST_FILE"])
prov.add(
agents=["wikidata"], activity="testing", description="this is a testfunction"
)
assert str(prov.get_current_location()) == str(
prov_files / test_filenames["TEST_FILE"]
)
def test_load_agent_profiles(prov_path_with_agents):
agent.cfg = get_config(prov_path_with_agents)
agents = agent.load_agent_profiles()
# First we check for correct structure of returned agents_list
assert len(agents) == 3
assert isinstance(agents[0], agent.SoftwareAgent)
assert isinstance(agents[1], agent.PersonAgent)
assert isinstance(agents[2], agent.OrganizationAgent)
# Then we check for correct properties of each agent
for i, a in enumerate([SA, PA, OA]):
check_attrs(agents[i], a)
def app(path_with_directories, monkeypatch):
test_path, _ = path_with_directories
cfg = get_config(test_path)
def mock_home():
return test_path
monkeypatch.setattr(home, "cfg", cfg)
monkeypatch.setattr(Path, "home", mock_home)
app = backend.create_app(cfg)
return app
def prov_path_with_agents(tmp_path_factory):
prov_path = tmp_path_factory.mktemp("with_agents")
cfg = get_config(prov_path)
for agent_file in [
"wikidata.yaml",
"johndoe.yaml",
"gephi_0.9.2.yaml",
"invalid.yaml",
]:
origin_path = Path(__file__).resolve().parent / "fixtures"
shutil.copy(str(origin_path / agent_file), str(cfg.agents_dir))
return prov_path
def path_with_directories(tmp_path_factory):
test_path = tmp_path_factory.mktemp("directories_with_file")
existing_dir = test_path / EXISTING_DIRNAME
non_existing_dir = test_path / NON_EXISTING_DIRNAME
existing_dir.mkdir()
# Add noprov file without provenance
noprov_file = test_path / NOPROV_FILE
noprov_file.touch()
# Add data file with provenance
data_file = test_path / DATA_FILE
data_file.touch()
data_file_prov = Provenance(data_file)
data_file_prov.add(agents=[TEST_AGENT],
activity="testactivity",
description=TEST_ACTIVITY)
data_file_prov.save()
d_content = {
str(existing_dir.resolve()): {
"comment": "test123"
},
str(non_existing_dir.resolve()): {
"comment": "bla"
},
}
d_expect = [
{
"directory": str(existing_dir.resolve()),
"comment": "test123",
"exists": True,
},
{
"directory": str(non_existing_dir.resolve()),
"comment": "bla",
"exists": False,
},
]
home.cfg = get_config(test_path)
with open(home.cfg.directories_file, "w") as dfile:
yaml.dump(d_content, dfile)
return test_path, d_expect
def test_get_agents(prov_files, test_filenames, prov_path_with_agents):
provit.prov.cfg = get_config(prov_path_with_agents)
prov = provit.prov.Provenance(prov_files / test_filenames["TEST_FILE"])
prov.add(
agents=["wikidata"], activity="testing", description="this is a testfunction"
)
prov.add(
agents=["gephi_0.9.2"], activity="testing", description="this is a testfunction"
)
prov.add(
agents=["johndoe"], activity="testing", description="this is a testfunction"
)
agent_list = prov.get_agents()
assert len(agent_list) == 3
assert prov.get_agents(include_primary_sources=True)["wikidata"] == {
"slug": "wikidata",
"uri": "http://vocab.ub.uni-leipzig.de/provit/wikidata",
"type": "Organization",
"name": ["Wikidata"],
"homepage": ["https://www.wikidata.org"],
}
def test_agent_factory(prov_path_with_agents):
agent.cfg = get_config(prov_path_with_agents)
agents = agent.load_agent_profiles()
check_attrs(agent.agent_factory("johndoe", agent.PersonAgent), PA)
def test_load_agent_profile_invalid_agent(prov_path_with_agents):
agent.cfg = get_config(prov_path_with_agents)
assert agent.load_agent_profile("invalid") == None
def test_load_agent_profiles_on_empty(tmp_path):
agent.cfg = get_config(tmp_path)
agents = agent.load_agent_profiles()
print(agents)
assert agents == []