def test_parse_model_table_file(self):
path = self.write_model_file(
'model_1.tsv', '\n'.join([
'# comment', 'rxn_1', 'rxn_2', 'rxn_3', 'rxn_4 # line comment'
]))
reactions = list(native.parse_model_file(path))
self.assertEqual(reactions, ['rxn_1', 'rxn_2', 'rxn_3', 'rxn_4'])
def test_parse_model_table_file(self):
path = self.write_model_file('model_1.tsv', '\n'.join([
'# comment',
'rxn_1',
'rxn_2',
'rxn_3',
'rxn_4 # line comment']))
reactions = list(native.parse_model_file(path))
self.assertEqual(reactions, ['rxn_1', 'rxn_2', 'rxn_3', 'rxn_4'])
def test_parse_model_yaml_file(self):
path = self.write_model_file('model_1.yaml', '''---
- include: model_2.yaml
- reactions:
- rxn_3
- rxn_4''')
self.write_model_file('model_2.yaml', '''---
- groups:
- name: First group
reactions: [rxn_1]
- name: Second group
reactions: [rxn_2]''')
reactions = list(native.parse_model_file(path))
self.assertEqual(reactions, ['rxn_1', 'rxn_2', 'rxn_3', 'rxn_4'])
def test_parse_model_yaml_file(self):
path = self.write_model_file('model_1.yaml', '''---
- include: model_2.yaml
- reactions:
- rxn_3
- rxn_4''')
self.write_model_file('model_2.yaml', '''---
- groups:
- name: First group
reactions: [rxn_1]
- name: Second group
reactions: [rxn_2]''')
reactions = list(native.parse_model_file(path))
self.assertEqual(reactions, ['rxn_1', 'rxn_2', 'rxn_3', 'rxn_4'])