def main(args):
DATA_PATH = os.getcwd()+"\\"
# User Settings
if os.path.isfile(DATA_PATH + args.userFile):
userSettings = files.openFile(DATA_PATH,args.userFile)
else:
raise Exception ("user setting file not found")
# internal (expert) Settings
if args.expertFile:
if os.path.isfile(DATA_PATH + args.expertFile):
internalSettings = files.openFile(DATA_PATH,args.expertFile)
else:
raise Exception ("expert setting file not found")
else:
internalSettings = None
# translators
if os.path.isfile(DATA_PATH + "CGM1_1.translators"):
translators = files.openFile(DATA_PATH,"CGM1_1.translators")
else:
translators = None
# --- Manager ----
manager = ModelManager.CGM1_1ConfigManager(userSettings,localInternalSettings=internalSettings,localTranslators=translators)
manager.contruct()
finalSettings = manager.getFinalSettings()
files.prettyDictPrint(finalSettings)
logging.info("=============Calibration=============")
model,finalAcqStatic = cgm1_1.calibrate(DATA_PATH,
manager.staticTrial,
manager.translators,
manager.requiredMp,
manager.optionalMp,
manager.leftFlatFoot,
manager.rightFlatFoot,
manager.markerDiameter,
manager.pointSuffix,
displayCoordinateSystem=True)
btkTools.smartWriter(finalAcqStatic, str(DATA_PATH+finalSettings["Calibration"]["StaticTrial"]))#[:-4]+"-pyCGM2modelled.c3d"))
logging.info("Static Calibration -----> Done")
manager.updateMp(model)
#files.prettyDictPrint(manager.finalSettings)
logging.info("=============Fitting=============")
for trial in manager.dynamicTrials:
mfpa = None if trial["Mfpa"] == "Auto" else trial["Mfpa"]
reconstructFilenameLabelled = trial["File"]
acqGait = cgm1_1.fitting(model,DATA_PATH, reconstructFilenameLabelled,
manager.translators,
manager.markerDiameter,
manager.pointSuffix,
mfpa,
manager.momentProjection,
displayCoordinateSystem=True)
btkTools.smartWriter(acqGait, str(DATA_PATH+reconstructFilenameLabelled))#[:-4]+"-pyCGM2modelled.c3d"))
logging.info("---->dynamic trial (%s) processed" %(reconstructFilenameLabelled))
logging.info("=============Writing of final Settings=============")
i = 0
while os.path.exists("CGM1.1 [%s].completeSettings" % i):
i += 1
filename = "CGM1.1 [" + str(i)+"].completeSettings"
files.saveJson(DATA_PATH, filename, finalSettings)
logging.info("---->complete settings (%s) exported" %(filename))
raw_input("Press return to exit..")
def getCGMmanager(CGMversion,
userSettings,
internalSettings=None,
translators=None,
localIkWeight=None,
vsk=None):
# --- Manager ----
if model == "CGM1.0":
manager = ModelManager.CGM1ConfigManager(
userSettings,
localInternalSettings=internalSettings,
localTranslators=translators,
localIkWeight=localIkWeight,
vsk=vsk)
elif model == "CGM1.1":
manager = ModelManager.CGM1_1ConfigManager(
userSettings,
localInternalSettings=internalSettings,
localTranslators=translators,
localIkWeight=localIkWeight,
vsk=vsk)
elif model == "CGM2.1":
manager = ModelManager.CGM2_1ConfigManager(
userSettings,
localInternalSettings=internalSettings,
localTranslators=translators,
localIkWeight=localIkWeight,
vsk=vsk)
elif model == "CGM2.2":
manager = ModelManager.CGM2_2ConfigManager(
userSettings,
localInternalSettings=internalSettings,
localTranslators=translators,
localIkWeight=localIkWeight,
vsk=vsk)
elif model == "CGM2.3":
manager = ModelManager.CGM2_3ConfigManager(
userSettings,
localInternalSettings=internalSettings,
localTranslators=translators,
localIkWeight=localIkWeight,
vsk=vsk)
elif model == "CGM2.4":
manager = ModelManager.CGM2_4ConfigManager(
userSettings,
localInternalSettings=internalSettings,
localTranslators=translators,
localIkWeight=localIkWeight,
vsk=vsk)
elif model == "CGM2.5":
manager = ModelManager.CGM2_5ConfigManager(
userSettings,
localInternalSettings=internalSettings,
localTranslators=translators,
localIkWeight=localIkWeight,
vsk=vsk)
else:
raise Exception(
"[pyCGM2] : Model version not known (choice CGM1.0 to CGM2.5 )")
manager.contruct()
return manager
def main(args):
DATA_PATH = os.getcwd() + "\\"
# User Settings
if os.path.isfile(DATA_PATH + args.userFile):
userSettings = files.openFile(DATA_PATH, args.userFile)
else:
raise Exception("user setting file not found")
# internal (expert) Settings
if args.expertFile:
if os.path.isfile(DATA_PATH + args.expertFile):
internalSettings = files.openFile(DATA_PATH, args.expertFile)
else:
raise Exception("expert setting file not found")
else:
internalSettings = None
# translators
if os.path.isfile(DATA_PATH + "CGM1_1.translators"):
translators = files.openFile(DATA_PATH, "CGM1_1.translators")
else:
translators = None
# --- Manager ----
manager = ModelManager.CGM1_1ConfigManager(
userSettings,
localInternalSettings=internalSettings,
localTranslators=translators)
manager.contruct()
finalSettings = manager.getFinalSettings()
# files.prettyDictPrint(finalSettings)
# logging.info("=============Calibration=============")
model, finalAcqStatic = cgm1_1.calibrate(DATA_PATH,
manager.staticTrial,
manager.translators,
manager.requiredMp,
manager.optionalMp,
manager.leftFlatFoot,
manager.rightFlatFoot,
manager.headFlat,
manager.markerDiameter,
manager.pointSuffix,
displayCoordinateSystem=True)
btkTools.smartWriter(
finalAcqStatic,
str(DATA_PATH + finalSettings["Calibration"]["StaticTrial"][:-4]) +
'.C3D') #+"-pyCGM2modelled.c3d"
# logging.info("Static Calibration -----> Done")
manager.updateMp(model)
#files.prettyDictPrint(manager.finalSettings)
# logging.info("=============Fitting=============")
for trial in manager.dynamicTrials:
mfpa = None if trial["Mfpa"] == "Auto" else trial["Mfpa"]
reconstructFilenameLabelled = trial["File"]
acqGait = cgm1_1.fitting(model,
DATA_PATH,
reconstructFilenameLabelled,
manager.translators,
manager.markerDiameter,
manager.pointSuffix,
mfpa,
manager.momentProjection,
displayCoordinateSystem=True)
btkTools.smartWriter(
acqGait,
str(DATA_PATH + reconstructFilenameLabelled[:-4]) +
'.C3D') #+"-pyCGM2modelled.c3d"
def getCGMmanager(CGMversion,
userSettings,
internalSettings=None,
translators=None,
localIkWeight=None,
vsk=None):
"""
return CGM settings
:param CGMversion [str]: CGM version name
:param userSettings [dict]: content of the userSettings yaml file
**optional**
:param internalSettings [dict]: content of the internalSettings yaml file
:param translators [dict]: content of the translators file
:param localIkWeight [dict]: content of the localIkweight file
:param vsk [file]: vsk file
**Return**
:param [dict]: eventual CGM settings
"""
# --- Manager ----
if model == "CGM1.0":
manager = ModelManager.CGM1ConfigManager(
userSettings,
localInternalSettings=internalSettings,
localTranslators=translators,
localIkWeight=localIkWeight,
vsk=vsk)
elif model == "CGM1.1":
manager = ModelManager.CGM1_1ConfigManager(
userSettings,
localInternalSettings=internalSettings,
localTranslators=translators,
localIkWeight=localIkWeight,
vsk=vsk)
elif model == "CGM2.1":
manager = ModelManager.CGM2_1ConfigManager(
userSettings,
localInternalSettings=internalSettings,
localTranslators=translators,
localIkWeight=localIkWeight,
vsk=vsk)
elif model == "CGM2.2":
manager = ModelManager.CGM2_2ConfigManager(
userSettings,
localInternalSettings=internalSettings,
localTranslators=translators,
localIkWeight=localIkWeight,
vsk=vsk)
elif model == "CGM2.3":
manager = ModelManager.CGM2_3ConfigManager(
userSettings,
localInternalSettings=internalSettings,
localTranslators=translators,
localIkWeight=localIkWeight,
vsk=vsk)
elif model == "CGM2.4":
manager = ModelManager.CGM2_4ConfigManager(
userSettings,
localInternalSettings=internalSettings,
localTranslators=translators,
localIkWeight=localIkWeight,
vsk=vsk)
elif model == "CGM2.5":
manager = ModelManager.CGM2_5ConfigManager(
userSettings,
localInternalSettings=internalSettings,
localTranslators=translators,
localIkWeight=localIkWeight,
vsk=vsk)
else:
raise Exception(
"[pyCGM2] : Model version not known (choice CGM1.0 to CGM2.5 )")
manager.contruct()
return manager