def setUp(self):
# create a sample image in memory
self.su1 = u'kanso <Diagnosis>**diabetes**</Diagnosis> utesl\xf6t eller diabetes men inte s\xe4kert. Vi siktar p\xe5 en r\xf6ntgenkontroll. kan det vara nej panik\xe5ngesten\n?'
self.su2 = u'IMPRESSION: 1. LIMITED STUDY DEMONSTRATING NO GROSS EVIDENCE OF SIGNIFICANT PULMONARY EMBOLISM.'
self.su3 = u'This is a sentence that does not end with a number. But this sentence ends with 1. So this should be recognized as a third sentence.'
self.su4 = u'This is a sentence with a numeric value equal to 1.43 and should not be split into two parts.'
self.items = {"targets":[ CI.create_ConTextItem([u"pulmonary embolism",
u"PULMONARY_EMBOLISM",
r"""pulmonary\s(artery )?(embol[a-z]+)""",
""]),
],
"modifiers":[CI.create_ConTextItem(["no gross evidence of",
"PROBABLE_NEGATED_EXISTENCE",
"",
"forward"])]}
self.ci0 = self.items['targets'][0]
self.ci1 = self.items['modifiers'][0]
self.ti0 = TI.create_tagItem(self.ci0,(20,25),"Brian Chapman",0)
self.ti1 = TI.create_tagItem(self.ci0,( 5,30),"Wendy Chapman",1)
self.markup = nx.DiGraph()
self.markup.add_nodes_from([self.ti0,self.ti1])
def setUp(self):
# create a sample image in memory
self.su1 = u'kanso <Diagnosis>**diabetes**</Diagnosis> utesl\xf6t eller diabetes men inte s\xe4kert. Vi siktar p\xe5 en r\xf6ntgenkontroll. kan det vara nej panik\xe5ngesten\n?'
self.su2 = u'IMPRESSION: 1. LIMITED STUDY DEMONSTRATING NO GROSS EVIDENCE OF SIGNIFICANT PULMONARY EMBOLISM.'
self.su3 = u'This is a sentence that does not end with a number. But this sentence ends with 1. So this should be recognized as a third sentence.'
self.su4 = u'This is a sentence with a numeric value equal to 1.43 and should not be split into two parts.'
self.items = {
"targets": [
CI.create_ConTextItem([
u"pulmonary embolism", u"PULMONARY_EMBOLISM",
r"""pulmonary\s(artery )?(embol[a-z]+)""", ""
])
],
"modifiers": [
CI.create_ConTextItem([
"no gross evidence of", "PROBABLE_NEGATED_EXISTENCE", "",
"forward"
])
]
}
self.ci0 = self.items['targets'][0]
self.ci1 = self.items['modifiers'][0]
self.ti0 = TI.create_tagItem(self.ci0, (20, 25), "Brian Chapman", 0)
self.ti1 = TI.create_tagItem(self.ci0, (5, 30), "Wendy Chapman", 1)
self.markup = nx.DiGraph()
self.markup.add_nodes_from([self.ti0, self.ti1])
self.cd = CD.ConTextDocument()
def setUp(self):
# create a sample image in memory
self.items = {"targets":[ CI.create_ConTextItem([u"pulmonary embolism",
u"PULMONARY_EMBOLISM",
r"""pulmonary\s(artery )?(embol[a-z]+)""",""])],
"modifiers":[CI.create_ConTextItem(["no gross evidence of",
"PROBABLE_NEGATED_EXISTENCE,HEDGE_TERM","","forward"])]}
self.ci0 = self.items['targets'][0]
self.ci1 = self.items['modifiers'][0]
def setUp(self):
# create a sample image in memory
self.items = {
"targets": [
CI.create_ConTextItem([
u"pulmonary embolism", u"PULMONARY_EMBOLISM",
r"""pulmonary\s(artery )?(embol[a-z]+)""", ""
])
],
"modifiers": [
CI.create_ConTextItem([
"no gross evidence of",
"PROBABLE_NEGATED_EXISTENCE,HEDGE_TERM", "", "forward"
])
]
}
self.ci0 = self.items['targets'][0]
self.ci1 = self.items['modifiers'][0]
def test_read_ConTextItem1(self):
items, headers = CI.readConTextItems(self.files['lexical_kb'][1])
assert items
def test_test_rule(self):
ci = CI.create_ConTextItem(self.items["modifiers"][0])
assert CI.test_rule(ci,"Forward") == True
assert CI.test_rule(ci,"forward") == True
assert CI.test_rule(ci,"bidirection") == False
def test_isA(self):
ci = CI.create_ConTextItem(self.items["modifiers"][0])
assert CI.isA(ci,"HEART_DISEASE") == False
assert CI.isA(ci,"HEDGE_TERM") == True
def test_create_ConTextItem2(self):
ci = CI.create_ConTextItem(self.items['modifiers'][0])
assert ci.re == self.items['modifiers'][0][0].lower().strip()
assert len(ci.category) == 2
def test_create_ConTextItem(self):
ci = CI.create_ConTextItem(self.items['targets'][0])
assert ci.re == self.items['targets'][0][2]
assert ci.category == (self.items['targets'][0][1].lower().strip(),)
def test_read_ConTextItem1(self):
items, headers = CI.readConTextItems(self.files['lexical_kb'][1])
assert items
def test_test_rule(self):
ci = CI.create_ConTextItem(self.items["modifiers"][0])
assert CI.test_rule(ci, "Forward") == True
assert CI.test_rule(ci, "forward") == True
assert CI.test_rule(ci, "bidirection") == False
def test_isA(self):
ci = CI.create_ConTextItem(self.items["modifiers"][0])
assert CI.isA(ci, "HEART_DISEASE") == False
assert CI.isA(ci, "HEDGE_TERM") == True
def test_create_ConTextItem2(self):
ci = CI.create_ConTextItem(self.items['modifiers'][0])
assert ci.re == self.items['modifiers'][0][0].lower().strip()
assert len(ci.category) == 2
def test_create_ConTextItem(self):
ci = CI.create_ConTextItem(self.items['targets'][0])
assert ci.re == self.items['targets'][0][2]
assert ci.category == (self.items['targets'][0][1].lower().strip(), )