FileName.append(ResourceMeta.get('Name')[i])
FilePathName.append(ResourceMeta.get('Path')[i])
FilePathNameReadable.append(ResourceMeta.get('Readable')[i])
FileURIName.append(ResourceMeta.get('URI')[i])
# CollectionsIdx = [i for i, x in enumerate(ResourceMeta.get('Format')) if x == FileType]
else:
#===========================================================================
# NOTE: Scans being collected, directory structure not present. Flatten has no affect...
#===========================================================================
for i in xrange(0, len(ScanList)):
getHCP.Scan = ScanList[i]
ScanMeta = getHCP.getScanMeta()
for j in xrange(0, len(ScanMeta.get('Collections'))):
if (ScanMeta.get('Format')[j] in FileType):
# CollectionsIdx = ScanMeta.get('Format').index(FileType)
FilePathNameReadable.append(ScanMeta.get('Readable')[j])
currPath = ScanMeta.get('Path')[j]
currURI = ScanMeta.get('URI')[j]
if (OutputFile is not None):
currPathBase = os.path.dirname(currPath)
currURIBase = os.path.dirname(currURI)
OutputFileName.append(OutputFile)
DiffusionScanIdDict = {'RL_1ScanId' : None, 'RL_2ScanId' : None, 'RL_3ScanId' : None, 'LR_1ScanId' : None, 'LR_2ScanId' : None, 'LR_3ScanId' : None}
DiffusionDirList = ['RL_Dir1', 'RL_Dir2', 'RL_Dir3', 'LR_Dir1', 'LR_Dir2', 'LR_Dir3']
DiffusionDirDict = {'RL_Dir1' : '95', 'RL_Dir2' : '96', 'RL_Dir3' : '97', 'LR_Dir1' : '95', 'LR_Dir2' : '96', 'LR_Dir3' : '97' }
# DiffusionSeriesIntersectList = list(set(DiffusionSeriesList) & set(SeriesList))
for j in xrange(0, len(DiffusionSeriesList)):
currDiffDesc = DiffusionSeriesList[j]
if (sessionMeta.get('Series').count(currDiffDesc) > 0):
currDiffIdx = sessionMeta.get('Series').index(currDiffDesc)
currScanId = sessionMeta.get('IDs')[currDiffIdx]
currQuality = sessionMeta.get('Quality')[currDiffIdx]
getHCP.Scan = currScanId
scanParms = getHCP.getScanParms()
scanMeta = getHCP.getScanMeta()
EchoSpacingList.append(float(scanParms.get('EchoSpacing')) * 1.0e+3)
PhaseEncodingDirList.append(scanParms.get('PhaseEncodingDir'))
# ScanIdDict['LR_2ScanId'] = '-parameter LR_2ScanId=%s ' % str(currScanId)
if (currQuality in UsableList):
DiffusionScanIdDict[DiffusionScanIdList[DiffusionSeriesList.index(currDiffDesc)]] = '-parameter %s=%s ' % (DiffusionScanIdList[DiffusionSeriesList.index(currDiffDesc)], currScanId)
else:
DiffusionScanIdDict[DiffusionScanIdList[DiffusionSeriesList.index(currDiffDesc)]] = '-parameter %s=%s ' % (DiffusionScanIdList[DiffusionSeriesList.index(currDiffDesc)], DummyScanId)
DiffusionDirDict[DiffusionDirList[DiffusionSeriesList.index(currDiffDesc)]] = 'EMPTY'
else:
DiffusionScanIdDict[DiffusionScanIdList[DiffusionSeriesList.index(currDiffDesc)]] = '-parameter %s=%s ' % (DiffusionScanIdList[DiffusionSeriesList.index(currDiffDesc)], DummyScanId)
DiffusionDirDict[DiffusionDirList[DiffusionSeriesList.index(currDiffDesc)]] = 'EMPTY'
FileName.append(ResourceMeta.get('Name')[i])
FilePathName.append(ResourceMeta.get('Path')[i])
FilePathNameReadable.append(
ResourceMeta.get('Readable')[i])
FileURIName.append(ResourceMeta.get('URI')[i])
# CollectionsIdx = [i for i, x in enumerate(ResourceMeta.get('Format')) if x == FileType]
else:
#===========================================================================
# NOTE: Scans being collected, directory structure not present. Flatten has no affect...
#===========================================================================
for i in xrange(0, len(ScanList)):
getHCP.Scan = ScanList[i]
ScanMeta = getHCP.getScanMeta()
for j in xrange(0, len(ScanMeta.get('Collections'))):
if (ScanMeta.get('Format')[j] in FileType):
# CollectionsIdx = ScanMeta.get('Format').index(FileType)
FilePathNameReadable.append(ScanMeta.get('Readable')[j])
currPath = ScanMeta.get('Path')[j]
currURI = ScanMeta.get('URI')[j]
if (OutputFile is not None):
currPathBase = os.path.dirname(currPath)
currURIBase = os.path.dirname(currURI)
OutputFileName.append(OutputFile)
'LR_Dir1': '95',
'LR_Dir2': '96',
'LR_Dir3': '97'
}
# DiffusionSeriesIntersectList = list(set(DiffusionSeriesList) & set(SeriesList))
for j in xrange(0, len(DiffusionSeriesList)):
currDiffDesc = DiffusionSeriesList[j]
if (sessionMeta.get('Series').count(currDiffDesc) > 0):
currDiffIdx = sessionMeta.get('Series').index(currDiffDesc)
currScanId = sessionMeta.get('IDs')[currDiffIdx]
currQuality = sessionMeta.get('Quality')[currDiffIdx]
getHCP.Scan = currScanId
scanParms = getHCP.getScanParms()
scanMeta = getHCP.getScanMeta()
EchoSpacingList.append(
float(scanParms.get('EchoSpacing')) * 1.0e+3)
PhaseEncodingDirList.append(
scanParms.get('PhaseEncodingDir'))
# ScanIdDict['LR_2ScanId'] = '-parameter LR_2ScanId=%s ' % str(currScanId)
if (currQuality in UsableList):
DiffusionScanIdDict[DiffusionScanIdList[
DiffusionSeriesList.
index(currDiffDesc)]] = '-parameter %s=%s ' % (
DiffusionScanIdList[DiffusionSeriesList.index(
currDiffDesc)], currScanId)
else:
DiffusionScanIdDict[DiffusionScanIdList[
