def main():
# **************************** 基础信息 ***********************
logger = init_logger(log_name=config['model']['arch'],
log_dir=config['output']['log_dir'])
logger.info(f"seed is {config['train']['seed']}")
device = 'cuda:%d' % config['train']['n_gpu'][0] if len(
config['train']['n_gpu']) else 'cpu'
seed_everything(seed=config['train']['seed'], device=device)
logger.info('starting load data from disk')
id2label = {value: key for key, value in config['label2id'].items()}
#**************************** 数据生成 ***********************
DT = DataTransformer(logger=logger, seed=config['train']['seed'])
# 读取数据集以及数据划分
targets, sentences = DT.read_data(
raw_data_path=config['data']['test_file_path'],
preprocessor=EnglishPreProcessor(),
is_train=False)
tokenizer = BertTokenizer(
vocab_file=config['pretrained']['bert']['vocab_path'],
do_lower_case=config['train']['do_lower_case'])
# train
test_dataset = CreateDataset(data=list(zip(sentences, targets)),
tokenizer=tokenizer,
max_seq_len=config['train']['max_seq_len'],
seed=config['train']['seed'],
example_type='test')
# 验证数据集
test_loader = DataLoader(dataset=test_dataset,
batch_size=config['train']['batch_size'],
num_workers=config['train']['num_workers'],
shuffle=False,
drop_last=False,
pin_memory=False)
# **************************** 模型 ***********************
logger.info("initializing model")
model = BertFine.from_pretrained(
config['pretrained']['bert']['bert_model_dir'],
cache_dir=config['output']['cache_dir'],
num_classes=len(id2label))
# **************************** training model ***********************
logger.info('model predicting....')
predicter = Predicter(
model=model,
logger=logger,
n_gpu=config['train']['n_gpu'],
model_path=config['output']['checkpoint_dir'] /
f"best_{config['model']['arch']}_model.pth",
)
# 拟合模型
result = predicter.predict(data=test_loader)
print(result)
# 释放显存
if len(config['train']['n_gpu']) > 0:
torch.cuda.empty_cache()
def main():
# **************************** Log initial data ***********************
logger = init_logger(log_name=config['model']['arch'],
log_dir=config['output']['log_dir'])
logger.info(f"seed is {config['train']['seed']}")
device = f"cuda: {config['train']['n_gpu'][0] if len(config['train']['n_gpu']) else 'cpu'}"
seed_everything(seed=config['train']['seed'], device=device)
logger.info('starting load data from disk')
id2label = {value: key for key, value in config['label2id'].items()}
DT = DataTransformer(logger=logger, seed=config['train']['seed'])
targets, sentences = DT.read_data(
raw_data_path=config['data']['raw_data_path'],
preprocessor=EnglishPreProcessor(),
is_train=True)
train, valid = DT.train_val_split(
X=sentences,
y=targets,
save=True,
shuffle=True,
stratify=False,
valid_size=config['train']['valid_size'],
train_path=config['data']['train_file_path'],
valid_path=config['data']['valid_file_path'])
tokenizer = BertTokenizer(
vocab_file=config['pretrained']['bert']['vocab_path'],
do_lower_case=config['train']['do_lower_case'])
# train
train_dataset = CreateDataset(data=train,
tokenizer=tokenizer,
max_seq_len=config['train']['max_seq_len'],
seed=config['train']['seed'],
example_type='train')
# valid
valid_dataset = CreateDataset(data=valid,
tokenizer=tokenizer,
max_seq_len=config['train']['max_seq_len'],
seed=config['train']['seed'],
example_type='valid')
# train loader
train_loader = DataLoader(dataset=train_dataset,
batch_size=config['train']['batch_size'],
num_workers=config['train']['num_workers'],
shuffle=True,
drop_last=False,
pin_memory=False)
# validation set loader
valid_loader = DataLoader(dataset=valid_dataset,
batch_size=config['train']['batch_size'],
num_workers=config['train']['num_workers'],
shuffle=False,
drop_last=False,
pin_memory=False)
# **************************** initialize model ***********************
logger.info("initializing model")
model = BertFine.from_pretrained(
config['pretrained']['bert']['bert_model_dir'],
cache_dir=config['output']['cache_dir'],
num_classes=len(id2label))
# ************************** set params *************************
param_optimizer = list(model.named_parameters())
no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight']
optimizer_grouped_parameters = [{
'params':
[p for n, p in param_optimizer if not any(nd in n for nd in no_decay)],
'weight_decay':
0.01
}, {
'params':
[p for n, p in param_optimizer if any(nd in n for nd in no_decay)],
'weight_decay':
0.0
}]
num_train_steps = int(
len(train_dataset.examples) / config['train']['batch_size'] /
config['train']['gradient_accumulation_steps'] *
config['train']['epochs'])
# t_total: total number of training steps for the learning rate schedule
# warmup: portion of t_total for the warmup
optimizer = BertAdam(optimizer_grouped_parameters,
lr=config['train']['learning_rate'],
warmup=config['train']['warmup_proportion'],
t_total=num_train_steps)
# **************************** callbacks ***********************
logger.info("initializing callbacks")
# model checkpoint
model_checkpoint = ModelCheckpoint(
checkpoint_dir=config['output']['checkpoint_dir'],
mode=config['callbacks']['mode'],
monitor=config['callbacks']['monitor'],
save_best_only=config['callbacks']['save_best_only'],
arch=config['model']['arch'],
logger=logger)
# monitor
train_monitor = TrainingMonitor(file_dir=config['output']['figure_dir'],
arch=config['model']['arch'])
# learning rate scheduler
lr_scheduler = BertLR(optimizer=optimizer,
learning_rate=config['train']['learning_rate'],
t_total=num_train_steps,
warmup=config['train']['warmup_proportion'])
# **************************** training model ***********************
logger.info('training model....')
train_configs = {
'model':
model,
'logger':
logger,
'optimizer':
optimizer,
'resume':
config['train']['resume'],
'epochs':
config['train']['epochs'],
'n_gpu':
config['train']['n_gpu'],
'gradient_accumulation_steps':
config['train']['gradient_accumulation_steps'],
'epoch_metrics': [F1Score(average='micro', task_type='binary')],
'batch_metrics': [AccuracyThresh(thresh=0.5)],
'criterion':
BCEWithLogLoss(),
'model_checkpoint':
model_checkpoint,
'training_monitor':
train_monitor,
'lr_scheduler':
lr_scheduler,
'early_stopping':
None,
'verbose':
1
}
trainer = Trainer(train_configs=train_configs)
trainer.train(train_data=train_loader, valid_data=valid_loader)
if len(config['train']['n_gpu']) > 0:
torch.cuda.empty_cache()
def main():
# **************************** Basic Info ***********************
logger = init_logger(log_name=config['arch'], log_dir=config['log_dir'])
logger.info("seed is %d" % config['seed'])
device = 'cuda:%d' % config['n_gpus'][0] if len(
config['n_gpus']) else 'cpu'
seed_everything(seed=config['seed'], device=device)
logger.info('starting load data from disk')
# split the reports
if config['resume']:
split_reports = SplitReports(raw_reports_dir=config['raw_reports_dir'],
raw_data_path=config['raw_data_path'])
split_reports.split()
df = pd.read_csv(config['raw_data_path'])
label_list = df.columns.values[2:].tolist()
config['label_to_id'] = {label: i for i, label in enumerate(label_list)}
config['id_to_label'] = {i: label for i, label in enumerate(label_list)}
config['vocab_path'] = path.sep.join(
[config['bert_model_dir'], 'vocab.txt'])
# **************************** Data ***********************
data_transformer = DataTransformer(logger=logger,
raw_data_path=config['raw_data_path'],
label_to_id=config['label_to_id'],
train_file=config['train_file_path'],
valid_file=config['valid_file_path'],
valid_size=config['valid_size'],
seed=config['seed'],
preprocess=Preprocessor(),
shuffle=config['shuffle'],
skip_header=True,
stratify=False)
# dataloader and pre-processing
data_transformer.read_data()
tokenizer = BertTokenizer(vocab_file=config['vocab_path'],
do_lower_case=config['do_lower_case'])
# train
train_dataset = CreateDataset(data_path=config['train_file_path'],
tokenizer=tokenizer,
max_seq_len=config['max_seq_len'],
seed=config['seed'],
example_type='train')
# valid
valid_dataset = CreateDataset(data_path=config['valid_file_path'],
tokenizer=tokenizer,
max_seq_len=config['max_seq_len'],
seed=config['seed'],
example_type='valid')
# resume best model
if config['resume']:
train_loader = [0]
else:
train_loader = DataLoader(dataset=train_dataset,
batch_size=config['batch_size'],
num_workers=config['num_workers'],
shuffle=True,
drop_last=False,
pin_memory=False)
# valid
valid_loader = DataLoader(dataset=valid_dataset,
batch_size=config['batch_size'],
num_workers=config['num_workers'],
shuffle=False,
drop_last=False,
pin_memory=False)
# **************************** Model ***********************
logger.info("initializing model")
if config['resume']:
with open(config['lab_dir'], 'r') as f:
config['label_to_id'] = load(f)
model = BertFine.from_pretrained(config['bert_model_dir'],
cache_dir=config['cache_dir'],
num_classes=len(config['label_to_id']))
# ************************** Optimizer *************************
param_optimizer = list(model.named_parameters())
no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight']
optimizer_grouped_parameters = [{
'params':
[p for n, p in param_optimizer if not any(nd in n for nd in no_decay)],
'weight_decay':
0.01
}, {
'params':
[p for n, p in param_optimizer if any(nd in n for nd in no_decay)],
'weight_decay':
0.0
}]
num_train_steps = int(
len(train_dataset.examples) / config['batch_size'] /
config['gradient_accumulation_steps'] * config['epochs'])
# t_total: total number of training steps for the learning rate schedule
# warmup: portion of t_total for the warmup
optimizer = BertAdam(optimizer_grouped_parameters,
lr=config['learning_rate'],
warmup=config['warmup_proportion'],
t_total=num_train_steps)
# **************************** callbacks ***********************
logger.info("initializing callbacks")
# save model
model_checkpoint = ModelCheckpoint(
checkpoint_dir=config['checkpoint_dir'],
mode=config['mode'],
monitor=config['monitor'],
save_best_only=config['save_best_only'],
best_model_name=config['best_model_name'],
epoch_model_name=config['epoch_model_name'],
arch=config['arch'],
logger=logger)
# monitor
train_monitor = TrainingMonitor(fig_dir=config['figure_dir'],
json_dir=config['log_dir'],
arch=config['arch'])
# TensorBoard
start_time = datetime.datetime.now().strftime('%m%d_%H%M%S')
writer_dir = os.path.join(config['writer_dir'], config['feature-based'],
start_time)
TSBoard = WriterTensorboardX(writer_dir=writer_dir,
logger=logger,
enable=True)
# learning rate
lr_scheduler = BertLr(optimizer=optimizer,
lr=config['learning_rate'],
t_total=num_train_steps,
warmup=config['warmup_proportion'])
# **************************** training model ***********************
logger.info('training model....')
trainer = Trainer(model=model,
train_data=train_loader,
val_data=valid_loader,
optimizer=optimizer,
epochs=config['epochs'],
criterion=BCEWithLogLoss(),
logger=logger,
model_checkpoint=model_checkpoint,
training_monitor=train_monitor,
TSBoard=TSBoard,
resume=config['resume'],
lr_scheduler=lr_scheduler,
n_gpu=config['n_gpus'],
label_to_id=config['label_to_id'],
evaluate_auc=AUC(sigmoid=True),
evaluate_f1=F1Score(sigmoid=True),
incorrect=Incorrect(sigmoid=True))
trainer.summary()
trainer.train()
# release cache
if len(config['n_gpus']) > 0:
torch.cuda.empty_cache()
def main():
# **************************** log ***********************
logger = init_logger(log_name=config['model']['arch'], log_dir=config['output']['log_dir'])
logger.info(f"seed is {config['train']['seed']}")
device = 'cuda:%d' % config['train']['n_gpu'][0] if len(config['train']['n_gpu']) else 'cpu'
seed_everything(seed=config['train']['seed'],device=device)
logger.info('starting load data from disk')
id2label = {value: key for key, value in config['label2id'].items()}
#**************************** data input ***********************
DT = DataTransformer(logger = logger,seed = config['train']['seed'])
# read test data
targets, sentences = DT.read_data(raw_data_path=config['data']['test_file_path'],
preprocessor=EnglishPreProcessor(),
is_train=False)
tokenizer = BertTokenizer(vocab_file=config['pretrained']['bert']['vocab_path'],
do_lower_case=config['train']['do_lower_case'])
# prepare test dataset
test_dataset = CreateDataset(data = list(zip(sentences,targets)),
tokenizer = tokenizer,
max_seq_len = config['train']['max_seq_len'],
seed = config['train']['seed'],
example_type = 'test')
# pytorch dataloader
test_loader = DataLoader(dataset = test_dataset,
batch_size = config['train']['batch_size'],
num_workers = config['train']['num_workers'],
shuffle = False,
drop_last = False,
pin_memory = False)
# **************************** start model ***********************
logger.info("initializing model")
model = BertFine.from_pretrained(config['pretrained']['bert']['bert_model_dir'],
cache_dir=config['output']['cache_dir'],
num_classes = len(id2label))
# **************************** training model ***********************
logger.info('model predicting....')
'''predicter = Predicter(model = model,
logger = logger,
n_gpu=config['train']['n_gpu'],
model_path = config['output']['checkpoint_dir'] / f"best_{config['model']['arch']}_model.pth",
)'''
predicter = Predicter(model = model,
logger = logger,
n_gpu=config['train']['n_gpu'],
model_path = config['output']['checkpoint_dir'] / f"best_{config['model']['arch']}_model.pth"
)
# predict results
result = predicter.predict(data = test_loader)
result = np.where(result > 0.5, 1, 0)
print('accuracy score', accuracy_score(targets, result))
print('\nF1 score', f1_score(targets, result))
print('\nclassification report', classification_report(targets, result))
# empty cache after testing
if len(config['train']['n_gpu']) > 0:
torch.cuda.empty_cache()
def main():
# **************************** 基础信息 ***********************
logger = init_logger(log_name=config['arch'], log_dir=config['log_dir'])
logger.info("seed is %d" % config['seed'])
device = 'cuda:%d' % config['n_gpus'][0] if len(
config['n_gpus']) else 'cpu'
seed_everything(seed=config['seed'], device=device)
logger.info('starting load data from disk')
config['id_to_label'] = {v: k for k, v in config['label_to_id'].items()}
# **************************** 数据生成 ***********************
data_transformer = DataTransformer(logger=logger,
raw_data_path=config['raw_data_path'],
label_to_id=config['label_to_id'],
train_file=config['train_file_path'],
valid_file=config['valid_file_path'],
valid_size=config['valid_size'],
seed=config['seed'],
preprocess=Preprocessor(),
shuffle=True,
skip_header=True,
stratify=False)
# 读取数据集以及数据划分
data_transformer.read_data()
tokenizer = BertTokenizer(vocab_file=config['vocab_path'],
do_lower_case=config['do_lower_case'])
# train
train_dataset = CreateDataset(data_path=config['train_file_path'],
tokenizer=tokenizer,
max_seq_len=config['max_seq_len'],
seed=config['seed'],
example_type='train')
# valid
valid_dataset = CreateDataset(data_path=config['valid_file_path'],
tokenizer=tokenizer,
max_seq_len=config['max_seq_len'],
seed=config['seed'],
example_type='valid')
#加载训练数据集
train_loader = DataLoader(dataset=train_dataset,
batch_size=config['batch_size'],
num_workers=config['num_workers'],
shuffle=True,
drop_last=False,
pin_memory=False)
# 验证数据集
valid_loader = DataLoader(dataset=valid_dataset,
batch_size=config['batch_size'],
num_workers=config['num_workers'],
shuffle=False,
drop_last=False,
pin_memory=False)
# **************************** 模型 ***********************
logger.info("initializing model")
model = BertFine.from_pretrained(config['bert_model_dir'],
cache_dir=config['cache_dir'],
num_classes=len(config['label_to_id']))
# ************************** 优化器 *************************
param_optimizer = list(model.named_parameters())
no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight']
optimizer_grouped_parameters = [{
'params':
[p for n, p in param_optimizer if not any(nd in n for nd in no_decay)],
'weight_decay':
0.01
}, {
'params':
[p for n, p in param_optimizer if any(nd in n for nd in no_decay)],
'weight_decay':
0.0
}]
num_train_steps = int(
len(train_dataset.examples) / config['batch_size'] /
config['gradient_accumulation_steps'] * config['epochs'])
# t_total: total number of training steps for the learning rate schedule
# warmup: portion of t_total for the warmup
optimizer = BertAdam(optimizer_grouped_parameters,
lr=config['learning_rate'],
warmup=config['warmup_proportion'],
t_total=num_train_steps)
# **************************** callbacks ***********************
logger.info("initializing callbacks")
# 模型保存
model_checkpoint = ModelCheckpoint(
checkpoint_dir=config['checkpoint_dir'],
mode=config['mode'],
monitor=config['monitor'],
save_best_only=config['save_best_only'],
best_model_name=config['best_model_name'],
epoch_model_name=config['epoch_model_name'],
arch=config['arch'],
logger=logger)
# 监控训练过程
train_monitor = TrainingMonitor(fig_dir=config['figure_dir'],
json_dir=config['log_dir'],
arch=config['arch'])
# 学习率机制
lr_scheduler = BertLr(optimizer=optimizer,
lr=config['learning_rate'],
t_total=num_train_steps,
warmup=config['warmup_proportion'])
# **************************** training model ***********************
logger.info('training model....')
trainer = Trainer(model=model,
train_data=train_loader,
val_data=valid_loader,
optimizer=optimizer,
epochs=config['epochs'],
criterion=BCEWithLogLoss(),
logger=logger,
model_checkpoint=model_checkpoint,
training_monitor=train_monitor,
resume=config['resume'],
lr_scheduler=lr_scheduler,
n_gpu=config['n_gpus'],
label_to_id=config['label_to_id'],
evaluate=AUC(sigmoid=True))
# 查看模型结构
trainer.summary()
# 拟合模型
trainer.train()
# 释放显存
if len(config['n_gpus']) > 0:
torch.cuda.empty_cache()
def main():
logger = init_logger(log_name=config['model']['arch'],
log_dir=config['output']['log_dir'])
logger.info(f"seed is {config['train']['seed']}")
device = 'cuda:%d' % config['train']['n_gpu'][0] if len(
config['train']['n_gpu']) else 'cpu'
seed_everything(seed=config['train']['seed'], device=device)
logger.info('starting load data from disk')
id2label = {value: key for key, value in config['label2id'].items()}
DT = DataTransformer(logger=logger, seed=config['train']['seed'])
targets, sentences, ids = DT.read_data(
raw_data_path=config['data']['test_file_path'],
preprocessor=EnglishPreProcessor(),
is_train=False)
tokenizer = BertTokenizer(
vocab_file=config['pretrained']['bert']['vocab_path'],
do_lower_case=config['train']['do_lower_case'])
# test dataset
test_dataset = CreateDataset(data=list(zip(sentences, targets)),
tokenizer=tokenizer,
max_seq_len=config['train']['max_seq_len'],
seed=config['train']['seed'],
example_type='test')
test_loader = DataLoader(dataset=test_dataset,
batch_size=config['train']['batch_size'],
num_workers=config['train']['num_workers'],
shuffle=False,
drop_last=False,
pin_memory=False)
# **************************** load pretrained model from cache ***********************
logger.info("initializing model")
model = BertFine.from_pretrained(
config['pretrained']['bert']['bert_model_dir'],
cache_dir=config['output']['cache_dir'],
num_classes=len(id2label))
# **************************** inference ***********************
logger.info('model predicting....')
predicter = Predicter(
model=model,
logger=logger,
n_gpu=config['train']['n_gpu'],
model_path=config['output']['checkpoint_dir'] /
f"best_{config['model']['arch']}_model.pth",
)
# predict
result = predicter.predict(data=test_loader)
file = open(config['output']['inference_output_dir'], 'w')
for index, line, score in zip(ids, sentences, result):
file.write(str(index) + '\t' + line + '\t' + str(score[0]))
file.write('\n')
file.close()
if len(config['train']['n_gpu']) > 0:
torch.cuda.empty_cache()
def main():
# **************************** SETUP/READ FROM CONFIG ***********************
logger = init_logger(log_name=config['model']['arch'],
log_dir=config['output']['log_dir'])
logger.info(f"seed is {config['train']['seed']}")
device = 'cuda:%d' % config['train']['n_gpu'][0] if len(
config['train']['n_gpu']) else 'cpu'
seed_everything(seed=config['train']['seed'], device=device)
logger.info('starting load data from disk')
id2label = {value: key for key, value in config['label2id'].items()}
#**************************** ***********************
DT = DataTransformer(logger=logger, seed=config['train']['seed'])
# Preprocessing
targets, sentences = DT.read_data(
raw_data_path=config['data']['test_file_path'],
preprocessor=EnglishPreProcessor(),
is_train=False)
tokenizer = BertTokenizer(
vocab_file=config['pretrained']['bert']['vocab_path'],
do_lower_case=config['train']['do_lower_case'])
#**************************** TOKENIZING *********************************
test_dataset = CreateDataset(data=list(zip(sentences, targets)),
tokenizer=tokenizer,
max_seq_len=config['train']['max_seq_len'],
seed=config['train']['seed'],
example_type='test')
#*************************** DATALOADER ******************************
test_loader = DataLoader(dataset=test_dataset,
batch_size=config['train']['batch_size'],
num_workers=config['train']['num_workers'],
shuffle=False,
drop_last=False,
pin_memory=False)
# **************************** LOAD MODEL ***********************
logger.info("initializing model")
model = BertFine.from_pretrained(
config['pretrained']['bert']['bert_model_dir'],
cache_dir=config['output']['cache_dir'],
num_classes=len(id2label))
# **************************** RUNNING PREDICTIONS ***********************
logger.info('model predicting....')
predicter = Predicter(
model=model,
logger=logger,
n_gpu=config['train']['n_gpu'],
model_path=config['output']['checkpoint_dir'] /
f"best_{config['model']['arch']}_model.pth",
)
# *************************OUTPUT RESULTS TO CSV*************************
result = predicter.predict(data=test_loader)
print(result)
df = pd.DataFrame(result)
cols = [
'toxic', 'severe_toxic', 'obscene', 'threat', 'insult', 'identity_hate'
]
df.columns = cols
print(df.head())
df.to_csv('pybert/output/result/result.csv')
# ******************************EMPTY GPU CACHE************************************
if len(config['train']['n_gpu']) > 0:
torch.cuda.empty_cache()
