def traits_view(self):
egrp = VGroup(HGroup(Item('ex'), Item('ey')),
BorderHGroup(icon_button_editor('increment_down_x', 'arrow_left'),
icon_button_editor('increment_up_x', 'arrow_right'),
UItem('x_magnitude'),
label='X'),
BorderHGroup(icon_button_editor('increment_up_y', 'arrow_up'),
icon_button_editor('increment_down_y', 'arrow_down'),
UItem('y_magnitude'),
label='Y'),
BorderHGroup(UItem('width'),
icon_button_editor('width_increment_minus_button', 'delete'),
icon_button_editor('width_increment_plus_button', 'add'), label='Width'),
BorderHGroup(UItem('height'),
icon_button_editor('height_increment_minus_button', 'delete'),
icon_button_editor('height_increment_plus_button', 'add'), label='Height'),
UItem('save_button'))
g = VGroup(UItem('groups', style='custom',
editor=ListEditor(use_notebook=True,
page_name='.name',
selected='selected_group',
editor=InstanceEditor())))
v = View(VGroup(g, egrp))
return v
def traits_view(self):
rgrp = BorderHGroup(
UItem('selected_reactor_name',
editor=EnumEditor(name='reactor_names')),
icon_button_editor(
'add_reactor_button',
'add',
tooltip='Add Default Production for the selected '
'Reactor to this Irradiation level'),
icon_button_editor('update_reactor_default_button',
'arrow_up',
tooltip='Set current as the reactor default'),
label='Available Default Productions')
pgrp = BorderHGroup(
UItem('selected_production_name',
editor=EnumEditor(name='production_names')),
icon_button_editor('apply_selected_production',
'arrow_left',
tooltip='Apply selection'),
icon_button_editor('add_production_button',
'database_add',
tooltip='Add a Production Ratio'),
icon_button_editor('edit_production_button',
'database_edit',
enabled_when='selected_production',
tooltip='Edit Production Ratio'),
label='Production'),
pr_group = VGroup(rgrp,
pgrp,
UItem('selected_production', style='custom'),
label='Production Ratios')
editor = TabularEditor(adapter=TrayAdapter(),
editable=False,
selected='selected_tray')
tray_grp = VGroup(HGroup(
icon_button_editor('add_tray_button',
'add',
tooltip='Add a tray from file')),
HSplit(
UItem('trays', editor=editor, width=0.25),
UItem('canvas',
editor=ComponentEditor(),
width=0.75)),
label='Tray')
v = okcancel_view(VGroup(
HGroup(Item('name'), Item('z')),
VGroup(UItem('level_note', style='custom'),
label='Level Note',
show_border=True), Group(pr_group,
tray_grp,
layout='tabbed')),
width=550,
height=650,
title=self.title)
return v
def _get_edit_group(self):
cnt_grp = self._get_cnt_grp()
cmp_grp = self._get_cmp_grp()
opt_grp = self._get_opt_grp()
atype_grp = self._get_atype_grp()
act_grp = BorderVGroup(
HGroup(
Item('action'),
Item('nskip', enabled_when='action=="Skip N Runs"',
label='N')),
HGroup(Item('use_truncation', label='Truncate'),
Item('use_termination', label='Terminate')),
BorderHGroup(UItem(
'extraction_str',
tooltip='''modify extract value for associated runs. e.g.
1. 1,2,3 (increase step i by 1W, step i+1 by 2W, step i+2 by 3W)
2. 10%,50% (increase step i by 10%, step i+1 by 50%)'''),
visible_when='action=="Set Extract"',
label='Extraction'),
label='Modification')
edit_grp = VGroup(
Item('attr',
label='Attribute',
editor=myEnumEditor(name='available_attrs')),
VGroup(opt_grp,
cmp_grp,
cnt_grp,
atype_grp,
act_grp,
enabled_when='attr'))
return edit_grp
def traits_view(self):
v = okcancel_view(
BorderHGroup(UItem('delayed_start_enabled'),
UItem('start_date',
enabled_when='delayed_start_enabled'),
UItem('start_time',
enabled_when='delayed_start_enabled'),
label='Start'),
BorderHGroup(UItem('scheduled_stop_enabled'),
UItem('stop_date',
enabled_when='scheduled_stop_enabled'),
UItem('stop_time',
enabled_when='scheduled_stop_enabled'),
label='Stop'),
title='Configure Scheduler')
return v
def _get_edit_view(self):
tooltip = """'Omit analyses based on the provided criteria. For example x>10 will omit any analysis
greater than 10. The value of x depends on the Auxiliary plot e.g. x is age for Analysis Number or K/Ca for KCa.
x is simply a placeholder and can be replaced by any letter or word except for a few exceptions
(i.e and, or, is, on, if, not...). To filter based on error or %error use "error" and "percent_error". Multiple predicates may be combined
with "and", "or". Valid comparators are "<,<=,>,>=,==,!=". "==" means "equals" and "!=" means "not equal".
Additional examples
1. x<10
2. age<10 or age>100
3. age<10 or error>1
4. x<=10 or percent_error>50
5. xyz<=10 and error>=0.1"""
sigma_tooltip = """Omit analyses greater the N sigma from the arithmetic mean"""
fgrp = BorderVGroup(HGroup(
Item('filter_str', tooltip=tooltip, label='Filter'),
UItem('filter_str_tag')),
HGroup(
Item('sigma_filter_n',
label='Sigma Filter N',
tooltip=sigma_tooltip),
UItem('sigma_filter_tag')),
label='Filtering')
v = View(
VGroup(HGroup(
Item('name', editor=EnumEditor(name='names')),
Item('scale', editor=EnumEditor(values=['linear', 'log']))),
Item('height'),
self._get_yticks_grp(),
BorderHGroup(UItem('marker',
editor=EnumEditor(values=marker_names)),
Item('marker_size', label='Size'),
label='Marker'),
BorderHGroup(Item('ymin', label='Min'),
Item('ymax', label='Max'),
label='Y Limits'),
fgrp,
show_border=True))
return v
def _get_truncate_group(self):
grp = VGroup(
HGroup(
run_factory_item('use_simple_truncation', label='Use Simple'),
icon_button_editor(
run_factory_name('clear_conditionals'),
'delete',
tooltip='Clear Conditionals from selected runs')),
BorderHGroup(run_factory_uitem(
'trunc_attr',
editor=myEnumEditor(name=run_factory_name('trunc_attrs'))),
run_factory_uitem('trunc_comp'),
run_factory_uitem('trunc_crit'),
spacer(-10),
run_factory_item('trunc_start', label='Start Count'),
label='Simple'),
BorderHGroup(
run_factory_item(
'conditionals_path',
editor=myEnumEditor(name=run_factory_name('conditionals')),
label='Path'),
icon_button_editor(
run_factory_name('edit_conditionals_button'),
'table_edit',
enabled_when=run_factory_name('conditionals_path'),
tooltip='Edit the selected conditionals file'),
icon_button_editor(
run_factory_name('new_conditionals_button'),
'table_add',
tooltip='Add a new conditionals file. Duplicated currently '
'selected file if applicable'),
icon_button_editor(
run_factory_name('apply_conditionals_button'),
'arrow_left',
tooltip='Apply conditionals file to selected analyses'),
label='File'),
enabled_when=queue_factory_name('ok_make'),
label='Run Conditionals')
return grp
def _get_global_group(self):
g = BorderHGroup(
Item('controller.save_enabled', label='Enabled'),
Item('controller.fit'), UItem('controller.error_type', width=-75),
Item('controller.filter_outliers', label='Filter Outliers'),
Item('show_sniff'))
gg = BorderVGroup(
Item('controller.goodness_threshold',
label='Intercept Goodness',
tooltip='If % error is greater than "Goodness Threshold" '
'mark regression as "Bad"'),
HGroup(
Item(
'controller.slope_goodness',
label='Slope Goodness',
tooltip='If slope of regression is positive and the isotope '
'intensity is greater than "Slope Goodness Intensity" '
'then mark regression as "Bad"'),
Item('controller.slope_goodness_intensity',
label='Intensity')),
Item(
'controller.outlier_goodness',
label='Outlier Goodness',
tooltip=
'If more than "Outlier Goodness" points are identified as outliers'
'then mark regression as "Bad"'),
HGroup(Item('controller.curvature_goodness'),
Item('controller.curvature_goodness_at')),
HGroup(
Item(
'controller.rsquared_goodness',
tooltip=
'If R-squared is less than threshold mark regression as "Bad"'
)),
HGroup(
Item(
'controller.signal_to_blank_goodness',
tooltip=
'If Blank/Signal*100 greater than threshold mark regression as "Bad"'
)))
agrp = self._get_analysis_group()
return VGroup(
agrp,
Item('controller.global_goodness_visible',
label='Global Edit Visible'),
BorderVGroup(g,
gg,
label='Global',
visible_when='controller.global_goodness_visible'))
def traits_view(self):
mi = BorderHGroup(UItem('mean_indicator_fontname'),
UItem('mean_indicator_fontsize'),
label='Mean Indicator')
ee = BorderHGroup(UItem('error_info_fontname'),
UItem('error_info_fontsize'),
label='Error Info')
ll = BorderHGroup(UItem('label_fontname'),
UItem('label_fontsize'),
label='Labels')
fgrp = BorderVGroup(BorderHGroup(UItem('fontname'),
label='Change All'),
HGroup(mi, ee),
ll,
HGroup(self._get_xfont_group(),
self._get_yfont_group()),
label='Fonts')
g = VGroup(self._get_nominal_group(), self._get_layout_group(),
self._get_padding_group(), fgrp)
return self._make_view(g)
def traits_view(self):
load_grp = BorderHGroup(
UItem('load_name', editor=EnumEditor(name='display_loads')),
Item('limit_to_analysis_loads',
tooltip='Limit Loads based on the selected analyses',
label='Limit Loads by Analyses'),
label='Load')
inst_grp = BorderVGroup(
HGroup(
UItem('use_extract_device'),
Item('extract_device',
enabled_when='enable_extract_device',
editor=EnumEditor(name='extract_devices'),
label='Extract Device')),
HGroup(
UItem('use_mass_spectrometer'),
Item('mass_spectrometer',
label='Mass Spectrometer',
enabled_when='enable_mass_spectrometer',
editor=EnumEditor(name='mass_spectrometers'))),
label='Instruments')
filter_grp = BorderVGroup(
Item('threshold',
tooltip=
'Maximum difference between references and unknowns in hours',
enabled_when='threshold_enabled',
label='Threshold (Hrs)'),
Item('use_graphical_filter', label='Graphical Selection'),
VGroup(UItem('analysis_types',
style='custom',
editor=CheckListEditor(
name='available_analysis_types', cols=2)),
show_border=True,
label='Analysis Types'),
label='Filtering')
v = self._view_factory(VGroup(load_grp, filter_grp, inst_grp))
return v
def traits_view(self):
plat_grp = BorderHGroup(
VGroup(
Item('omit_non_plateau', label='Omit Non Plateau Steps'),
Item('exclude_non_plateau',
label='Exclude Non Plateau Steps')),
HGroup(Item('plateau_method',
tooltip='Fleck 1977={}\n'
'Mahon 1996={}'.format(FLECK_PLATEAU_DEFINITION,
MAHON_PLATEAU_DEFINITION),
label='Method'),
icon_button_editor('edit_plateau_criteria',
'cog',
tooltip='Edit Plateau Criteria'),
visible_when='omit_non_plateau'),
label='Plateau')
g = Group(Item('error_calc_method',
width=-150,
label='Error Calculation Method'),
Item('regressor_kind', label='Method'),
plat_grp,
show_border=True,
label='Calculations')
info_grp = HGroup(
Item('show_info', label='Info'),
BorderHGroup(UItem('info_fontname'), UItem('info_fontsize')))
results_grp = HGroup(
Item('show_results_info', label='Results'),
VGroup(
BorderVGroup(
HGroup(
Item('nsigma', label='NSigma'),
Item('results_info_spacing',
editor=RangeEditor(mode='spinner',
low=2,
high=20,
is_float=False),
label='Spacing')),
HGroup(UItem('results_fontname'),
UItem('results_fontsize'))),
BorderHGroup(Item('age_sig_figs', label='Age'),
Item('yintercept_sig_figs', label='Y-Int.'),
label='SigFigs'),
BorderVGroup(Item('include_4036_mse', label='Ar40/Ar36'),
Item('include_age_mse', label='Age'),
Item('include_percent_error', label='%Error'),
label='Include')))
ellipse_grp = BorderHGroup(Item('fill_ellipses', label='fill'),
Item('ellipse_kind', label='Kind'),
label='Error Ellipse')
label_grp = BorderVGroup(Item('show_labels'),
HGroup(Item('label_box'),
UItem('label_fontname'),
UItem('label_fontsize'),
enabled_when='show_labels'),
label='Labels')
marker_grp = BorderHGroup(Item('marker_size', label='Size'),
Item('marker', label='Marker'),
label='Marker')
g2 = Group(
self._get_title_group(),
BorderVGroup(info_grp, results_grp, label='Info'),
Item('include_error_envelope'),
marker_grp,
ellipse_grp,
label_grp,
BorderVGroup(Item('show_nominal_intercept'),
HGroup(
Item('nominal_intercept_label',
label='Label',
enabled_when='show_nominal_intercept'),
Item('nominal_intercept_value',
label='Value',
enabled_when='show_nominal_intercept')),
label='Nominal Intercept'),
BorderVGroup(Item('display_inset'),
Item('inset_location'),
HGroup(Item('inset_marker_size',
label='Marker Size')),
HGroup(Item('inset_width', label='Width'),
Item('inset_height', label='Height')),
label='Inset'),
show_border=True,
label='Display')
return self._make_view(VGroup(g, g2))
def traits_view(self):
class VBorder(VGroup):
show_border = True
class UUItem(UCustom):
height = -50
unknown_grp = VGroup(
Item('unknown_title', label='Table Heading', springy=True),
VBorder(VBorder(UItem(
'unknown_note_name',
editor=EnumEditor(name='available_unknown_note_names')),
UItem('unknown_notes', style='custom'),
label='Main'),
VBorder(UUItem('unknown_corrected_note'),
label='Corrected'),
VBorder(UUItem('unknown_intercept_note'),
label='Intercept'),
VBorder(UUItem('unknown_time_note'), label='Time'),
VBorder(UUItem('unknown_x_note'), label='X'),
VBorder(UUItem('unknown_px_note'), label='pX'),
label='Notes'),
label='Unknowns Cont.')
def note(name):
tag = '{}s'.format(name.capitalize())
return VGroup(Item('{}_title'.format(name), label='Table Heading'),
VBorder(UItem('{}_notes'.format(name),
style='custom'),
label='Notes'),
label=tag)
air_grp = note('air')
blank_grp = note('blank')
monitor_grp = note('monitor')
grp = BorderVGroup(Item('name', label='Filename'),
Item('root_directory'),
Item('root_name',
editor=ComboboxEditor(name='root_names'),
enabled_when='not root_directory'),
Item('auto_view', label='Open in Excel'),
label='Save')
units_grp = BorderVGroup(
HGroup(Item('power_units', label='Power Units'),
Item('age_units', label='Age Units')),
HGroup(Item('intensity_units', label='Intensity Units'),
Item('sensitivity_units', label='Sensitivity Units')),
label='Units')
sigma_grp = BorderHGroup(Item('asummary_kca_nsigma', label='K/Ca'),
Item('asummary_age_nsigma', label='Age'),
Item('asummary_trapped_ratio_nsigma',
label='Trapped'),
label='N. Sigma')
sort_grp = BorderVGroup(HGroup(
Item('group_age_sorting', label='Group'),
Item('subgroup_age_sorting', label='SubGroup')),
Item('individual_age_sorting',
label='Individual'),
label='Sorting')
appearence_grp = BorderVGroup(
HGroup(Item('hide_gridlines', label='Hide Gridlines'),
Item('repeat_header', label='Repeat Header')),
units_grp,
sigma_grp,
sort_grp,
HGroup(
Item('highlight_non_plateau'),
UItem('highlight_color',
enabled_when='highlight_non_plateau')),
label='Appearance')
def sigfig(k):
return '{}_sig_figs'.format(k)
def isigfig(k, label, **kw):
return Item(sigfig(k), width=-40, label=label, **kw)
sig_figs_grp = BorderVGroup(
Item('sig_figs', label='Default'),
HGroup(isigfig('age', 'Age'), isigfig('summary_age',
'Summary Age')),
HGroup(isigfig('kca', 'K/Ca'),
isigfig('summary_kca', 'Summary K/Ca')),
HGroup(isigfig('radiogenic_yield', '%40Ar*'),
isigfig('cumulative_ar39', 'Cum. %39Ar')),
HGroup(isigfig('signal', 'Signal'), isigfig('j', 'Flux')),
HGroup(isigfig('ic', 'IC'), isigfig('disc', 'Disc.')),
HGroup(isigfig('decay', 'Decay'),
isigfig('correction', 'Correction Factors')),
HGroup(isigfig('sens', 'Sensitivity'), isigfig('k2o', 'K2O')),
Item('ensure_trailing_zeros', label='Ensure Trailing Zeros'),
label='Significant Figures')
def inc(k):
return 'include_{}'.format(k)
def iinc(k, label, **kw):
return Item(inc(k), label=label, **kw)
arar_col_grp = VGroup(iinc('F', '40Ar*/39ArK'),
iinc('percent_ar39', 'Cumulative %39Ar'),
iinc('radiogenic_yield', '%40Ar*'),
iinc('sensitivity', 'Sensitivity'),
iinc('k2o', 'K2O wt. %'),
iinc('production_ratios', 'Production Ratios'),
iinc('isochron_ratios', 'Isochron Ratios'),
iinc('time_delta', 'Time since Irradiation'),
iinc('kca', 'K/Ca'),
iinc('kcl', 'K/Cl'),
Item('invert_kca_kcl', label='Invert K/Ca,K/Cl'),
VGroup(iinc('lambda_k', 'Lambda K'),
iinc('monitor_age', 'Age'),
iinc('monitor_name', 'Name'),
iinc('monitor_material', 'Material'),
label='Flux Monitor'),
label='Ar/Ar')
general_col_grp = VGroup(Item('status_enabled', label='Status'),
Item('analysis_label_enabled',
label='Analysis Label'),
Item('tag_enabled', label='Tag'),
iinc('rundate', 'Analysis RunDate'),
iinc('blanks', 'Applied Blank'),
iinc('intercepts', 'Intercepts'),
iinc('icfactors', 'ICFactors'),
iinc('discrimination', 'Discrimination'),
label='General')
summary_rows_grp = BorderVGroup(iinc('summary_kca', 'Integrated K/Ca'),
iinc('plateau_age', 'Plateau Age'),
iinc('integrated_age',
'Total Integrated Age'),
iinc('isochron_age', 'Isochron Age'),
iinc('trapped_ratio',
'Trapped (40/36)atm'),
label='Summary Rows')
columns_grp = BorderHGroup(general_col_grp,
arar_col_grp,
label='Columns')
unk_columns_grp = VGroup(HGroup(columns_grp, sig_figs_grp),
summary_rows_grp,
label='Unknowns')
g1 = VGroup(HGroup(grp, appearence_grp), label='Main')
def isum(k):
return inc('summary_{}'.format(k))
def iisum(k, label, **kw):
return Item(isum(k), label=label, **kw)
summary_grp = VGroup(
iisum('sheet', 'Summary Sheet'),
VGroup(iisum('sample', 'Sample'),
iisum('identifier', 'Identifier'),
iisum('unit', 'Unit'),
iisum('location', 'Location'),
iisum('material', 'Material'),
iisum('irradiation', 'Irradiation'),
iisum('age_type', 'Age Type'),
iisum('n', 'N'),
iisum('percent_ar39', '%39Ar'),
iisum('mswd', 'MSWD'),
HGroup(iisum('kca', 'KCA'),
Item('summary_kca_nsigma', label=SIGMA)),
HGroup(iisum('age', 'Age'),
Item('summary_age_nsigma', label=SIGMA)),
iisum('comments', 'Comments'),
enabled_when=isum('sheet'),
label='Columns',
show_border=True),
VGroup(UItem('summary_notes', style='custom'),
show_border=True,
label='Notes'),
label='Summary')
calc_grp = VGroup(J_ERROR_GROUP, label='Calc.')
v = okcancel_view(Tabbed(g1, unk_columns_grp, unknown_grp, calc_grp,
blank_grp, air_grp, monitor_grp, summary_grp),
resizable=True,
width=775,
height=0.75,
title='XLSX Analysis Table Options',
scrollable=True)
return v
def traits_view(self):
add_button = icon_button_editor(
'add_button',
'add',
# enabled_when='ok_add',
tooltip='Add run')
save_button = icon_button_editor('save_button',
'disk',
tooltip='Save queue to file')
edit_button = icon_button_editor('edit_mode_button',
'table_edit',
enabled_when='edit_enabled',
tooltip='Toggle edit mode')
clear_button = icon_button_editor(
'clear_button',
'table_row_delete',
tooltip='Clear all runs added using "frequency"')
email_grp = BorderVGroup(HGroup(
queue_factory_item('use_email',
label='Use Email',
tooltip='Send email notifications'),
queue_factory_item('use_group_email',
tooltip='Email a group of users',
label='Email Group'),
icon_button_editor(queue_factory_name('edit_emails'),
'cog',
tooltip='Edit user group')),
queue_factory_uitem('email', springy=True),
label='Email')
user_grp = BorderHGroup(
UItem(queue_factory_name('username'),
editor=ComboboxEditor(name=queue_factory_name('usernames'))),
icon_button_editor(queue_factory_name('edit_user'),
'database_edit'),
label='User')
load_select = BorderHGroup(
queue_factory_uitem('load_name', width=150),
queue_factory_item(
'tray', editor=EnumEditor(name=queue_factory_name('trays'))),
icon_button_editor(
queue_factory_name('select_existing_load_name_button'),
'database_go',
tooltip='Get Load from Database'),
label='Load')
generate_queue = BorderHGroup(
icon_button_editor(
'generate_queue_button',
'brick-go',
tooltip='Generate a experiment queue from the selected load',
enabled_when='load_name'),
icon_button_editor(
'edit_queue_config_button',
'cog',
tooltip='Configure experiment queue generation'),
label='Generate Queue')
lgrp = VGroup(load_select, generate_queue)
ms_ed_grp = BorderVGroup(HGroup(
queue_factory_uitem(
'mass_spectrometer',
editor=myEnumEditor(
name=queue_factory_name('mass_spectrometers'))),
queue_factory_uitem(
'extract_device',
editor=myEnumEditor(
name=queue_factory_name('extract_devices')))),
lgrp,
queue_factory_item('default_lighting'),
label='Spectrometer/Extract Device')
name = queue_factory_name('available_conditionals')
queue_cond_grp = BorderHGroup(queue_factory_uitem(
'queue_conditionals_name',
label='Queue Conditionals',
editor=myEnumEditor(name=name)),
label='Queue Conditionals')
delay_grp = BorderVGroup(
queue_factory_item('delay_before_analyses',
label='Before Analyses (s)'),
queue_factory_item('delay_between_analyses',
label='Between Analyses (s)'),
queue_factory_item('delay_after_blank', label='After Blank (s)'),
queue_factory_item('delay_after_air', label='After Air (s)'),
label='Delays')
note_grp = BorderVGroup(queue_factory_uitem('note',
style='custom',
height=150),
label='Note')
queue_grp = VGroup(user_grp,
email_grp,
ms_ed_grp,
queue_cond_grp,
delay_grp,
note_grp,
label='Queue')
button_bar = HGroup(
save_button, add_button, clear_button, edit_button,
CustomLabel(run_factory_name('edit_mode_label'),
color='red',
width=40), spring)
button_bar2 = HGroup(
Item('auto_increment_id', label='Auto Increment L#'),
Item('auto_increment_position', label='Position'),
)
edit_grp = VFold(
queue_grp,
VGroup(self._get_info_group(),
self._get_extract_group(),
enabled_when=queue_factory_name('ok_make'),
label='General'), self._get_script_group(),
self._get_truncate_group())
v = View(VGroup(button_bar,
button_bar2,
UItem('pane.info_label', style='readonly'),
edit_grp,
enabled_when='edit_enabled'),
kind='live',
width=225)
return v