def setup(self):
self.load()
monlns = self.db.get_last_identifiers(self.monitor_name)
unklns = self.db.get_last_identifiers(excludes=(self.monitor_name, ))
if monlns:
self.mon_maxs = get_maxs(monlns)
if unklns:
self.unk_maxs = get_maxs(unklns)
info = self.edit_traits(view=View(
Item('offset'),
Item('level_offset'),
Item('mon_start',
label='Starting Monitor L#',
editor=ComboboxEditor(name='mon_maxs')),
Item('unk_start',
label='Starting Unknown L#',
editor=ComboboxEditor(name='unk_maxs')),
kind='livemodal',
title='Configure Identifier Generation',
buttons=['OK', 'Cancel']), )
if info.result:
self.dump()
return True
def traits_view(self):
notegrp = VGroup(Item('retain_note',
tooltip='Retain the Note for the next hole',
label='Lock'),
Item('note', style='custom', show_label=False),
show_border=True,
label='Note')
viewgrp = VGroup(
HGroup(Item('use_cmap', label='Color Map'),
UItem('cmap_name', enabled_when='use_cmap')),
Item('show_hole_numbers'),
Item('show_labnumbers'),
Item('show_weights'),
# Item('show_spans'),
show_border=True,
label='View')
load_grp = VGroup(
Item('username',
editor=ComboboxEditor(name='available_user_names')),
HGroup(
Item('load_name',
editor=EnumEditor(name='loads'),
label='Loads'),
icon_button_editor('add_button', 'add', tooltip='Add a load'),
icon_button_editor('delete_button',
'delete',
tooltip='Delete selected load'),
icon_button_editor('archive_button',
'application-x-archive',
tooltip='Archive a set of loads')),
label='Load',
show_border=True)
samplegrp = VGroup(
Item('irradiation',
editor=ComboboxEditor(name='irradiations',
refresh='refresh_irradiation')),
Item('level',
editor=ComboboxEditor(name='levels',
refresh='refresh_level')),
# Item('level'),
Item('labnumber',
editor=ComboboxEditor(name='labnumbers',
refresh='refresh_labnumber')),
Item('sample_info', style='readonly'),
HGroup(
Item('weight', label='Weight (mg)'),
Item('retain_weight',
label='Lock',
tooltip='Retain the Weight for the next hole')),
HGroup(Item('npositions', label='NPositions'),
Item('auto_increment')),
enabled_when='load_name',
show_border=True,
label='Sample')
v = View(VGroup(load_grp, samplegrp, notegrp, viewgrp))
return v
def traits_view(self):
pigrp = HGroup(UItem('principal_investigator',
editor=ComboboxEditor(name='principal_investigators',
use_filter=False)),
icon_button_editor('configure_pi_button', 'cog',
tooltip='Set optional values for Principal Investigator'),
icon_button_editor('add_principal_investigator_button', 'add',
enabled_when='principal_investigator',
tooltip='Add a principal investigator'),
label='PrincipalInvestigator',
show_border=True)
prgrp = HGroup(UItem('project',
# editor=EnumEditor(name='projects')),
editor=ComboboxEditor(name='projects', use_filter=False)),
UItem('generate_project_button', tooltip='Generate a default name for this project'),
UItem('set_optionals_button', tooltip='Set optional values for current project'),
icon_button_editor('add_project_button', 'add',
enabled_when='project',
tooltip='Add a project'),
enabled_when='project_enabled',
label='Project',
show_border=True)
mgrp = HGroup(UItem('material',
editor=EnumEditor(name='materials')),
# editor=ComboboxEditor(name='materials', use_filter=False)),
UItem('grainsize',
editor=ComboboxEditor(name='grainsizes', use_filter=False)),
# icon_button_editor('add_material_button', 'add',
# enabled_when='material',
# tooltip='Add a material'),
label='Material',
show_border=True)
sgrp = VGroup(HGroup(UItem('sample'),
icon_button_editor('configure_sample_button', 'cog', tooltip='Set additional sample '
'attributes'),
icon_button_editor('add_sample_button', 'add',
enabled_when='add_sample_enabled',
tooltip='Add a sample')),
VGroup(UItem('note', style='custom'), label='Note', show_border=True),
enabled_when='sample_enabled',
label='Sample',
show_border=True)
v = View(VGroup(pigrp,
prgrp,
mgrp,
sgrp,
CustomLabel('pane.help_str')
))
return v
def traits_view(self):
agrp = HGroup(Item('principal_investigator', label='PI',
editor=EnumEditor(name='principal_investigators')),
Item('project', label='Project',
editor=ComboboxEditor(name='projects')),
Item('sample', label='Sample',
editor=ComboboxEditor(name='samples')))
bgrp = VGroup(UItem('sessions', editor=TabularEditor(adapter=SessionAdapter(),
selected='session')))
v = okcancel_view(VGroup(agrp,
bgrp),
title='Locate Sample')
return v
def traits_view(self):
pigrp = HGroup(
UItem('principal_investigator',
editor=ComboboxEditor(name='principal_investigators')),
icon_button_editor('add_principal_investigator_button',
'add',
enabled_when='principal_investigator',
tooltip='Add a principal investigator'),
label='PrincipalInvestigator',
show_border=True)
prgrp = HGroup(UItem('project',
editor=ComboboxEditor(name='projects')),
icon_button_editor('add_project_button',
'add',
enabled_when='project',
tooltip='Add a project'),
enabled_when='project_enabled',
label='Project',
show_border=True)
mgrp = HGroup(UItem('material',
editor=ComboboxEditor(name='materials')),
UItem('grainsize',
editor=ComboboxEditor(name='grainsizes')),
icon_button_editor('add_material_button',
'add',
enabled_when='material',
tooltip='Add a material'),
label='Material',
show_border=True)
sgrp = HGroup(UItem('sample'),
icon_button_editor('add_sample_button',
'add',
enabled_when='sample',
tooltip='Add a sample'),
enabled_when='sample_enabled',
label='Sample',
show_border=True)
v = View(VGroup(
pigrp,
prgrp,
mgrp,
sgrp,
))
return v
def traits_view(self):
v = okcancel_view(UItem(
'update_reactor_name',
editor=ComboboxEditor(name='update_reactor_names')),
width=300,
title='Update Reactor Default')
return v
def traits_view(self):
self.sample_tabular_adapter.columns = [('Sample', 'name'),
('Material', 'material')]
# tgrp = HGroup(icon_button_editor('clear_button', 'table_lightning',
# enabled_when='selected',
# tooltip='Clear contents of selected positions'))
pi_grp = VGroup(UItem('principal_investigator',
editor=EnumEditor(name='principal_investigators')),
show_border=True,
label='Principal Investigator')
project_grp = VGroup(UItem('projects',
editor=FilterTabularEditor(editable=False,
use_fuzzy=True,
selected='selected_projects',
adapter=ProjectAdapter(),
multi_select=True),
width=175),
show_border=True,
label='Projects')
sample_grp = VGroup(HGroup(UItem('sample_filter_parameter',
editor=EnumEditor(name='sample_filter_parameters')),
UItem('sample_filter',
editor=ComboboxEditor(name='sample_filter_values'),
width=75),
# icon_button_editor('edit_sample_button', 'database_edit',
# tooltip='Edit sample in database'),
# icon_button_editor('add_sample_button', 'database_add',
# tooltip='Add sample to database')
icon_button_editor('clear_sample_button', 'clear',
tooltip='Clear selected sample')),
UItem('samples',
editor=TabularEditor(adapter=self.sample_tabular_adapter,
editable=False,
selected='selected_samples',
dclicked='dclicked',
multi_select=True,
column_clicked='column_clicked',
stretch_last_section=False),
width=75))
jgrp = HGroup(UItem('j'), Label(PLUSMINUS_ONE_SIGMA), UItem('j_err'),
icon_button_editor('estimate_j_button', 'cog'),
show_border=True, label='J')
ngrp = HGroup(UItem('note'),
UItem('weight'),
show_border=True, label='Note')
sgrp = HGroup(UItem('invert_flag'),
Item('selection_freq', label='Freq'),
show_border=True,
label='Selection')
v = View(VSplit(VGroup(HGroup(sgrp, jgrp),
ngrp,
pi_grp,
project_grp),
sample_grp,
style_sheet=load_stylesheet('labnumber_entry')))
return v
def _get_pi_group(self):
pi_grp = HGroup(UItem('principal_investigator_enabled'),
UItem('principal_investigator',
enabled_when='principal_investigator_enabled',
editor=ComboboxEditor(name='principal_investigators')),
label='PIs', show_border=True)
return pi_grp
def traits_view(self):
v = View(HGroup(
Item('name', editor=ComboboxEditor(name='names')),
Item('mass')),
width=500, title='Add New Molecular Weight',
buttons=['OK', 'Cancel'],
resizable=True)
return v
def traits_view(self):
v = okcancel_view(
Item('frequency_int'),
Item('template',
tooltip=TEMPLATE_HELP,
editor=ComboboxEditor(name='controller.templates',
addable=False)),
title='Edit Frequency Options')
return v
def setup(self):
self.load()
if not self.use_consecutive_identifiers:
monlns = self.db.get_last_identifiers(self.monitor_name)
unklns = self.db.get_last_identifiers(
excludes=(self.monitor_name, ))
if monlns:
self.mon_maxs = list(map(str, get_maxs(monlns)))
if unklns:
self.unk_maxs = list(map(str, get_maxs(unklns)))
self.mon_start = self.mon_maxs[0] if self.mon_maxs else 0
self.unk_start = self.unk_maxs[0] if self.unk_maxs else 0
else:
unklns = self.db.get_last_identifiers()
if unklns:
self.unk_maxs = list(map(str, get_maxs(unklns)))
self.unk_start = self.unk_maxs[0] if self.unk_maxs else 0
start_grp = VGroup(
Item('mon_start',
label='Starting Monitor Identifier',
editor=ComboboxEditor(name='mon_maxs'),
defined_when='not use_consecutive_identifiers'),
Item('unk_start',
label='Starting Unknown Identifier',
editor=ComboboxEditor(name='unk_maxs'),
defined_when='not use_consecutive_identifiers'),
Item('unk_start',
label='Starting Identifier',
editor=ComboboxEditor(name='unk_maxs'),
defined_when='use_consecutive_identifiers'))
info = self.edit_traits(
view=okcancel_view(Item('offset'),
Item('level_offset'),
start_grp,
title='Configure Identifier Generation'))
if info.result:
self.dump()
return True
def traits_view(self):
v = View(Label('Copy "Source" preferences to "Destination"'),
VGroup(UItem('src_user',
width=225,
editor=ComboboxEditor(name='users')),
label='Source',
show_border=True),
VGroup(Item('copy_all',
label='Copy All',
tooltip='Copy "Source" to all destinations'),
UItem('dest_user',
editor=ComboboxEditor(name='users'),
enabled_when='not copy_all',
width=225),
label='Destination',
show_border=True),
buttons=['OK', 'Cancel'],
title='Login',
kind='livemodal')
return v
def traits_view(self):
v = View(Label('Select your username or enter a new one'),
HGroup(
UItem('user',
width=225,
editor=ComboboxEditor(name='users'))),
handler=LoginHandler(),
buttons=['OK', 'Cancel'],
title='Login',
kind='livemodal')
return v
def traits_view(self):
agrp = HGroup(
Item('principal_investigator',
label='PI',
editor=EnumEditor(name='principal_investigators')),
Item('project',
label='Project',
editor=ComboboxEditor(name='projects')),
Item('sample',
label='Sample',
editor=ComboboxEditor(name='samples')))
bgrp = VGroup(
UItem('sessions',
editor=TabularEditor(adapter=SessionAdapter(),
selected='session')))
v = View(VGroup(agrp, bgrp),
buttons=['OK', 'Cancel'],
kind='livemodal',
resizable=True,
title='Locate Sample')
return v
def traits_view(self):
# style_sheet='QLabel {font-size: 10px} QLineEdit {font-size: 10px}'
a = VGroup(
Item('value', label='Repository Name'),
Item('principal_investigator',
editor=ComboboxEditor(name='principal_investigators')),
UItem('error_message', style='readonly', style_sheet=STYLESHEET))
buttons = [OKButton(), 'Cancel']
return self._new_view(a,
width=400,
title='Add {}'.format(self.tag),
buttons=buttons)
def _query_edit_view(self):
v = View(HGroup(
UItem('parameter',
editor=EnumEditor(name='parameters')),
UItem('comparator',
editor=EnumEditor(name='comparisons')),
UItem('criterion', editor=ComboboxEditor(name='criteria')),
# UItem('criterion',
# width=-25,
# editor=EnumEditor(name='criteria')),
UItem('chain_rule')),
height=125)
return v
def traits_view(self):
v = View(
Item('frequency_int'),
# Item('before'),
# Item('after'),
Item('template',
tooltip=TEMPLATE_HELP,
editor=ComboboxEditor(name='controller.templates',
addable=False)),
title='Edit Frequency Options',
buttons=['OK', 'Cancel'],
resizable=True)
return v
def _get_sample_group(self):
irrad_grp = self._get_irrad_group()
project_grp = self._get_project_group()
exp_grp = self._get_repositories_group()
analysis_type_group = self._get_analysis_type_group()
date_grp = self._get_date_group()
ms_grp = self._get_mass_spectrometer_group()
ln_grp = self._get_identifier_group()
pi_grp = self._get_pi_group()
top_level_filter_grp = VGroup(
# CustomLabel('filter_label',
# style='custom',
# width=-1.0,
# visible_when='not filter_focus'),
HGroup(pi_grp, ms_grp, ln_grp),
HGroup(project_grp, exp_grp, irrad_grp),
analysis_type_group,
date_grp)
# g1 = UItem('controller.tableview', style='custom')
sample_tools = HGroup(
UItem('sample_filter_parameter',
width=-90,
editor=EnumEditor(name='sample_filter_parameters')),
UItem('sample_filter_comparator'),
UItem('sample_filter',
editor=ComboboxEditor(name='sample_filter_values')),
icon_button_editor('clear_sample_table',
'clear',
tooltip='Clear Sample Table'))
sample_table = VGroup(
sample_tools,
UItem(
'samples',
editor=myTabularEditor(
adapter=self.model.labnumber_tabular_adapter,
editable=False,
selected='selected_samples',
multi_select=True,
dclicked='dclicked_sample',
column_clicked='column_clicked',
# update='update_sample_table',
# refresh='update_sample_table',
stretch_last_section=False)),
show_border=True,
label='Samples')
grp = VGroup(top_level_filter_grp, sample_table)
return grp
def traits_view(self):
db_auth_grp = Group(
Item('host',
editor=TextEditor(enter_set=True, auto_set=False),
width=125, label='Host'),
Item('username', label='User',
editor=TextEditor(enter_set=True, auto_set=False)),
Item('password', label='Password',
editor=TextEditor(enter_set=True, auto_set=False, password=True)),
enabled_when='kind=="mysql"',
show_border=True,
label='Authentication')
fav_grp = VGroup(Item('fav_name',
show_label=False),
Item('favorites',
show_label=False,
width=100,
editor=ListStrEditor(
editable=False,
adapter=FavoritesAdapter(),
selected='object.selected')),
HGroup(
icon_button_editor('add_favorite', 'add',
tooltip='Add saved connection'),
icon_button_editor('delete_favorite', 'delete',
tooltip='Delete saved connection'),
icon_button_editor('test_connection_button', 'database_connect',
tooltip='Test connection'),
Spring(width=10, springy=False),
Label('Status:'),
CustomLabel('_connected_label',
label='Status',
weight='bold',
color_name='_connected_color'),
spring,
show_labels=False))
db_grp = Group(HGroup(Item('kind', show_label=False),
Item('db_name',
label='Database Name',
editor=ComboboxEditor(name='_names')),
# UItem('progress_icon', editor=AnimatedPNGEditor(state='progress_state'))
),
# Item('save_username', label='User'),
HGroup(fav_grp, db_auth_grp),
show_border=True,
label='Pychron DB')
return View(db_grp)
def traits_view(self):
v = okcancel_view(
CustomLabel('message', color='red', size=14, defined_when='message'),
CustomLabel('user_help', defined_when='not message'),
HGroup(UItem('user', width=225,
enabled_when='user_enabled',
editor=ComboboxEditor(name='users'))),
Label('Select your work environment'),
HGroup(UItem('environment', width=225,
editor=EnumEditor(name='environments')),
icon_button_editor('directory_select_button',
'configure-2')),
handler=LoginHandler(),
title='Login')
return v
def traits_view(self):
# root_grp = VGroup(Item('root_dir', label='Pychron Directory'),
# show_border=True, label='Root')
user_grp = VGroup(Item('username',
editor=ComboboxEditor(name='_usernames'),
label='Name'),
show_border=True,
label='User')
env_grp = VGroup(Item('environment', label='Directory'),
show_border=True,
label='Environment')
# login_grp = VGroup(Item('use_login', label='Use Login'),
# Item('multi_user', label='Multi User'),
# label='Login', show_border=True)
o_grp = VGroup(Item('organization', resizable=True, label='Name'),
remote_status_item('Laboratory Repo'),
show_border=True,
label='Organization')
v = View(
VGroup(
Item('confirm_quit',
label='Confirm Quit',
tooltip=
'Ask user for confirmation when quitting application'),
Item(
'show_random_tip',
label='Random Tip',
tooltip='Display a Random Tip whe the application starts'),
Item('default_principal_investigator',
resizable=True,
label='Default PI'),
Item('lab_name', label='Laboratory Name'),
# Item('use_advanced_ui', label='Advanced UI',
# tooltip='Display the advanced UI'),
# root_grp,
# login_grp,
user_grp,
env_grp,
o_grp,
label='General',
show_border=True))
return v
def traits_view(self):
hgrp = VGroup(UItem('object.active_sample.steps',
editor=TabularEditor(adapter=PrepStepAdapter(),
selected='selected_step',
dclicked='dclicked',
editable=False)),
label='History')
hs = []
for steps, label in ((INITIAL_STEPS, 'Initial'),
(HIGH_GRADE_STEPS, 'High Grade'), (IMAGE_STEPS,
'Imaging')):
gs = []
for step in steps:
fstep = 'object.prep_step.flag_{}'.format(step)
g = HGroup(
Item('object.prep_step.{}'.format(step),
enabled_when='not {}'.format(fstep),
editor=ComboboxEditor(
name='object.prep_step.choices_{}'.format(step))),
spring, UItem(fstep))
gs.append(g)
vg = VGroup(show_border=True, label=label, *gs)
hs.append(vg)
hg = HGroup(*hs)
sg = HGroup((Item('object.prep_step.status'),
HGroup(
Item('object.prep_step.comment'),
icon_button_editor(
'object.prep_step.edit_comment_button', 'cog'))),
show_border=True,
label='Final')
ngrp = VGroup(hg, sg, label='New')
agrp = VGroup(HGroup(
icon_button_editor('add_step_button',
'add',
enabled_when='object.active_sample.name',
tooltip='Add a sample prep step'),
icon_button_editor('clear_step_button',
'clear',
enabled_when='object.active_sample.name',
tooltip='Clear values entered in "New"'),
icon_button_editor('upload_image_button',
'image_add',
tooltip='Add image'),
icon_button_editor('view_camera_button',
'camera',
tooltip='Take a picture'),
icon_button_editor('view_image_button',
'insert-image-link',
tooltip='View Associated Image'), spring,
UItem('object.active_sample.name', style='readonly'), spring),
Tabbed(hgrp, ngrp),
enabled_when='object.active_sample.name')
fgrp = HGroup(Item('fcrush', label='Crush'), spring,
Item('fsieve', label='Sieve'), spring,
Item('fwash', label='Wash'), spring,
Item(
'facid',
label='Acid',
), spring, Item(
'fheavy_liquid',
label='Heavy Liquid',
), spring, Item('fpick', label='Pick'), spring,
Item('fstatus', label='Status'))
v = View(VGroup(
fgrp,
UItem('session_samples',
editor=TabularEditor(adapter=SamplesAdapter(),
editable=False,
selected='active_sample')), agrp),
handler=SamplePrepHandler())
return v
def traits_view(self):
tgrp = HGroup(
VGroup(icon_button_editor('add_project_button',
'database_add',
tooltip='Add project'),
show_border=True,
label='Project'),
VGroup(icon_button_editor('add_material_button',
'database_add',
tooltip='Add material'),
show_border=True,
label='Material'),
VGroup(icon_button_editor('add_sample_button',
'database_add',
tooltip='Add sample'),
show_border=True,
label='Sample'),
icon_button_editor(
'generate_identifiers_button',
'table_lightning',
tooltip='Generate Identifiers for this irradiation'),
icon_button_editor(
'preview_generate_identifiers_button',
'document-preview',
tooltip=
'Preview identifiers generated for this irradiation level'))
project_grp = VGroup(UItem('projects',
editor=FilterTabularEditor(
editable=False,
selected='selected_projects',
adapter=ProjectAdapter(),
multi_select=True),
width=175),
show_border=True,
label='Projects')
sample_grp = VGroup(
HGroup(
UItem('sample_filter_parameter',
editor=EnumEditor(name='sample_filter_parameters')),
UItem('sample_filter',
editor=ComboboxEditor(name='sample_filter_values'),
width=75),
icon_button_editor('edit_sample_button',
'database_edit',
tooltip='Edit sample in database'),
icon_button_editor('add_sample_button',
'database_add',
tooltip='Add sample to database')),
UItem('samples',
editor=TabularEditor(adapter=self.labnumber_tabular_adapter,
editable=False,
selected='selected_samples',
multi_select=False,
column_clicked='column_clicked',
stretch_last_section=False),
width=75))
jgrp = HGroup(UItem('j'),
Label(PLUSMINUS_SIGMA),
UItem('j_err'),
icon_button_editor('estimate_j_button', 'cog'),
show_border=True,
label='J')
ngrp = HGroup(UItem('note'),
UItem('weight'),
show_border=True,
label='Note')
# wgrp = HGroup(UItem('weight'), show_border=True, label='Weight')
sgrp = HGroup(UItem('invert_flag'),
Item('selection_freq', label='Freq'),
show_border=True,
label='Selection')
v = View(
VSplit(
VGroup(
tgrp,
HGroup(sgrp, jgrp),
# wgrp,
ngrp,
project_grp),
sample_grp))
return v
def _get_root_item(self):
item = Item('root_directory', label='Directory',
editor=ComboboxEditor(name='repository_identifiers'))
return item
def traits_view(self):
ss = '''
QLineEdit {font-size: 14px}
QGroupBox {background-color: qlineargradient(x1: 0, y1: 0, x2: 0, y2: 1,
stop: 0 #E0E0E0, stop: 1 #FFFFFF);
border: 2px solid gray;
border-radius: 5px;
margin-top: 1ex; /* leave space at the top for the title */
font-size: 14px;
font-weight: bold;}
QGroupBox::title {subcontrol-origin: margin;
subcontrol-position: top left; /* position at the top center */
padding: 2 3px;}
QComboBox {font-size: 14px}
QLabel {font-size: 14px}
QToolBox::tab {font-size: 15px}
QToolTip {font-size: 14px}
'''
add_button = icon_button_editor(
'add_button',
'add',
# enabled_when='ok_add',
tooltip='Add run')
save_button = icon_button_editor('save_button',
'disk',
tooltip='Save queue to file')
edit_button = icon_button_editor('edit_mode_button',
'table_edit',
enabled_when='edit_enabled',
tooltip='Toggle edit mode')
clear_button = icon_button_editor(
'clear_button',
'table_row_delete',
tooltip='Clear all runs added using "frequency"')
email_grp = VGroup(HGroup(
queue_factory_item('use_email',
label='Use Email',
tooltip='Send email notifications'),
queue_factory_item('use_group_email',
tooltip='Email a group of users',
label='Email Group'),
icon_button_editor(queue_factory_name('edit_emails'),
'cog',
tooltip='Edit user group')),
Item(queue_factory_name('email')),
show_border=True,
label='Email')
user_grp = HGroup(UItem(
queue_factory_name('username'),
show_label=False,
editor=ComboboxEditor(name=queue_factory_name('usernames'))),
icon_button_editor(queue_factory_name('edit_user'),
'database_edit'),
show_border=True,
label='User')
ms_ed_grp = VGroup(HGroup(
queue_factory_item(
'mass_spectrometer',
show_label=False,
editor=EnumEditor(
name=queue_factory_name('mass_spectrometers'))),
queue_factory_item(
'extract_device',
show_label=False,
editor=EnumEditor(name=queue_factory_name('extract_devices'))),
queue_factory_item(
'load_name',
width=150,
label='Load',
editor=ComboboxEditor(name=queue_factory_name('load_names'))),
icon_button_editor(
'generate_queue_button',
'brick-go',
tooltip='Generate a experiment queue from the selected load',
enabled_when='load_name'),
icon_button_editor(
'edit_queue_config_button',
'cog',
tooltip='Configure experiment queue generation')),
HGroup(
queue_factory_item(
'queue_conditionals_name',
label='Queue Conditionals',
editor=EnumEditor(name=queue_factory_name(
'available_conditionals')))),
label='Spectrometer/Extract Device',
show_border=True)
delay_grp = VGroup(queue_factory_item('delay_before_analyses'),
queue_factory_item('delay_between_analyses'),
show_border=True,
label='Delays')
queue_grp = VGroup(user_grp,
email_grp,
ms_ed_grp,
delay_grp,
label='Queue')
button_bar = HGroup(
save_button, add_button, clear_button, edit_button,
CustomLabel(run_factory_name('edit_mode_label'),
color='red',
width=40), spring)
button_bar2 = HGroup(
Item('auto_increment_id', label='Auto Increment L#'),
Item('auto_increment_position', label='Position'),
)
edit_grp = VFold(
queue_grp,
VGroup(self._get_info_group(),
self._get_extract_group(),
enabled_when=queue_factory_name('ok_make'),
label='General'), self._get_script_group(),
self._get_truncate_group())
v = View(
VGroup(
button_bar,
button_bar2,
UItem('pane.info_label', style='readonly'),
edit_grp,
# lower_button_bar,
style_sheet=ss),
kind='live',
width=225)
return v
def traits_view(self):
group_table = UItem('analysis_groups',
label='Groups',
width=0.6,
editor=TabularEditor(
adapter=self.pane.analysis_group_tabular_adapter,
editable=False,
selected='selected_analysis_groups',
multi_select=True,
dclicked='dclicked_analysis_group',
# column_clicked='column_clicked',
# update='update_sample_table',
# refresh='update_sample_table',
stretch_last_section=False))
sample_tools = HGroup(UItem('sample_filter_parameter',
width=-90, editor=EnumEditor(name='sample_filter_parameters')),
UItem('sample_filter',
editor=ComboboxEditor(name='sample_filter_values')),
icon_button_editor('clear_sample_table',
'clear',
tooltip='Clear Sample Table'))
sample_table = VGroup(sample_tools,
UItem('samples',
editor=TabularEditor(
adapter=self.pane.labnumber_tabular_adapter,
editable=False,
selected='selected_samples',
multi_select=True,
dclicked='dclicked_sample',
column_clicked='column_clicked',
# update='update_sample_table',
# refresh='update_sample_table',
stretch_last_section=False)),
show_border=True, label='Samples')
def make_name(name):
return 'object.analysis_table.{}'.format(name)
analysis_tools = HGroup(UItem(make_name('analysis_filter_parameter'),
width=-90,
editor=EnumEditor(name=make_name('analysis_filter_parameters'))),
UItem(make_name('analysis_filter'),
editor=ComboboxEditor(name=make_name('analysis_filter_values'))))
analysis_table = VGroup(analysis_tools,
UItem(make_name('analyses'),
width=0.4,
editor=myTabularEditor(
adapter=self.model.analysis_table.tabular_adapter,
operations=['move'],
refresh=make_name('refresh_needed'),
selected=make_name('selected'),
dclicked=make_name('dclicked'),
multi_select=self.pane.multi_select,
drag_external=True,
scroll_to_row=make_name('scroll_to_row'),
stretch_last_section=False)),
# HGroup(spring, Item(make_name('omit_invalid'))),
defined_when=self.pane.analyses_defined,
show_border=True,
label='Analyses')
v = View(HGroup(sample_table, analysis_table))
return v
def traits_view(self):
add_button = icon_button_editor('add_button', 'add',
# enabled_when='ok_add',
tooltip='Add run')
save_button = icon_button_editor('save_button', 'disk',
tooltip='Save queue to file')
edit_button = icon_button_editor('edit_mode_button', 'table_edit',
enabled_when='edit_enabled',
tooltip='Toggle edit mode')
clear_button = icon_button_editor('clear_button',
'table_row_delete',
tooltip='Clear all runs added using "frequency"')
email_grp = VGroup(HGroup(queue_factory_item('use_email',
label='Use Email',
tooltip='Send email notifications'),
queue_factory_item('use_group_email',
tooltip='Email a group of users',
label='Email Group'),
icon_button_editor(queue_factory_name('edit_emails'), 'cog',
tooltip='Edit user group')),
Item(queue_factory_name('email')),
show_border=True,
label='Email')
user_grp = HGroup(UItem(queue_factory_name('username'),
show_label=False,
editor=ComboboxEditor(name=queue_factory_name('usernames'))),
icon_button_editor(queue_factory_name('edit_user'), 'database_edit'),
show_border=True,
label='User')
lgrp = HGroup(queue_factory_item('load_name',
width=150,
label='Load',
editor=ComboboxEditor(name=queue_factory_name('load_names'))),
icon_button_editor('generate_queue_button', 'brick-go',
tooltip='Generate a experiment queue from the selected load',
enabled_when='load_name'),
icon_button_editor('edit_queue_config_button', 'cog',
tooltip='Configure experiment queue generation'))
ms_ed_grp = VGroup(HGroup(queue_factory_item('mass_spectrometer',
show_label=False,
editor=EnumEditor(name=queue_factory_name('mass_spectrometers'))),
queue_factory_item('extract_device',
show_label=False,
editor=EnumEditor(name=queue_factory_name('extract_devices')))),
lgrp,
HGroup(queue_factory_item('queue_conditionals_name',
label='Queue Conditionals',
editor=EnumEditor(
name=queue_factory_name('available_conditionals')))),
label='Spectrometer/Extract Device',
show_border=True)
delay_grp = VGroup(queue_factory_item('delay_before_analyses'),
queue_factory_item('delay_between_analyses'),
show_border=True,
label='Delays')
queue_grp = VGroup(user_grp, email_grp, ms_ed_grp, delay_grp,
label='Queue')
button_bar = HGroup(save_button,
add_button,
clear_button,
edit_button,
CustomLabel(run_factory_name('edit_mode_label'),
color='red',
width=40),
spring)
button_bar2 = HGroup(Item('auto_increment_id', label='Auto Increment L#'),
Item('auto_increment_position', label='Position'), )
edit_grp = VFold(queue_grp,
VGroup(self._get_info_group(),
self._get_extract_group(),
enabled_when=queue_factory_name('ok_make'),
label='General'),
self._get_script_group(),
self._get_truncate_group())
v = View(VGroup(button_bar,
button_bar2,
UItem('pane.info_label', style='readonly'),
edit_grp,
style_sheet=load_stylesheet('experiment_factory')),
kind='live',
width=225)
return v
def _get_info_group(self):
grp = Group(HGroup(run_factory_item('selected_irradiation',
show_label=False,
editor=EnumEditor(name=run_factory_name('irradiations'))),
run_factory_item('selected_level',
show_label=False,
editor=EnumEditor(name=run_factory_name('levels')))),
HGroup(run_factory_item('special_labnumber',
show_label=False,
editor=EnumEditor(values=SPECIAL_NAMES)),
run_factory_item('run_block', show_label=False,
editor=EnumEditor(name=run_factory_name('run_blocks'))),
icon_button_editor(run_factory_name('edit_run_blocks'), 'cog'),
run_factory_item('frequency_model.frequency_int', width=50),
icon_button_editor(run_factory_name('edit_frequency_button'), 'cog'),
# run_factory_item('freq_before', label='Before'),
# run_factory_item('freq_after', label='After'),
spring),
# HGroup(run_factory_item('labnumber',
# tooltip='Enter a Labnumber',
# width=100, ),
# run_factory_item('_labnumber', show_label=False,
# editor=CheckListEditor(name=run_factory_name('labnumbers')),
# width=-20),
# run_factory_item('aliquot',
# width=50),
# spring),
HGroup(run_factory_item('labnumber',
tooltip='Enter a Labnumber',
width=100,
enabled_when='object.run_factory.special_labnumber == "Special Labnumber"',
editor=ComboboxEditor(name=run_factory_name('labnumbers'))),
run_factory_item('aliquot',
width=50),
spring),
HGroup(run_factory_item('repository_identifier',
label='Repository ID',
editor=EnumEditor(name=run_factory_name('repository_identifiers'))),
icon_button_editor(run_factory_name('add_repository_identifier'), 'add',
tooltip='Add a new repository'),
icon_button_editor(run_factory_name('set_repository_identifier_button'), 'arrow_left',
tooltip='Set select runs repository_identifier to current value')),
HGroup(run_factory_item('weight',
label='Weight (mg)',
tooltip='(Optional) Enter the weight of the sample in mg. '
'Will be saved in Database with analysis'),
run_factory_item('comment',
tooltip='(Optional) Enter a comment for this sample. '
'Will be saved in Database with analysis'),
run_factory_item('auto_fill_comment',
show_label=False,
tooltip='Auto fill "Comment" with IrradiationLevel:Hole, e.g A:9'),
# run_factory_item('comment_template',
# editor=EnumEditor(name=run_factory_name('comment_templates')),
# show_label=False),
icon_button_editor(run_factory_name('edit_comment_template'), 'cog',
tooltip='Edit comment template')),
HGroup(run_factory_item('flux'),
Label(u'\u00b1'),
run_factory_item('flux_error', show_label=False),
icon_button_editor(run_factory_name('save_flux_button'),
'database_save',
tooltip='Save flux to database'),
enabled_when=run_factory_name('labnumber')),
show_border=True,
label='Sample Info')
return grp
def traits_view(self):
class VBorder(VGroup):
show_border = True
class UUItem(UCustom):
height = -50
unknown_grp = VGroup(
Item('unknown_title', label='Table Heading', springy=True),
VBorder(VBorder(UItem(
'unknown_note_name',
editor=EnumEditor(name='available_unknown_note_names')),
UItem('unknown_notes', style='custom'),
label='Main'),
VBorder(UUItem('unknown_corrected_note'),
label='Corrected'),
VBorder(UUItem('unknown_intercept_note'),
label='Intercept'),
VBorder(UUItem('unknown_time_note'), label='Time'),
VBorder(UUItem('unknown_x_note'), label='X'),
VBorder(UUItem('unknown_px_note'), label='pX'),
label='Notes'),
label='Unknowns Cont.')
def note(name):
tag = '{}s'.format(name.capitalize())
return VGroup(Item('{}_title'.format(name), label='Table Heading'),
VBorder(UItem('{}_notes'.format(name),
style='custom'),
label='Notes'),
label=tag)
air_grp = note('air')
blank_grp = note('blank')
monitor_grp = note('monitor')
grp = BorderVGroup(Item('name', label='Filename'),
Item('root_directory'),
Item('root_name',
editor=ComboboxEditor(name='root_names'),
enabled_when='not root_directory'),
Item('auto_view', label='Open in Excel'),
label='Save')
units_grp = BorderVGroup(
HGroup(Item('power_units', label='Power Units'),
Item('age_units', label='Age Units')),
HGroup(Item('intensity_units', label='Intensity Units'),
Item('sensitivity_units', label='Sensitivity Units')),
label='Units')
sigma_grp = BorderHGroup(Item('asummary_kca_nsigma', label='K/Ca'),
Item('asummary_age_nsigma', label='Age'),
Item('asummary_trapped_ratio_nsigma',
label='Trapped'),
label='N. Sigma')
sort_grp = BorderVGroup(HGroup(
Item('group_age_sorting', label='Group'),
Item('subgroup_age_sorting', label='SubGroup')),
Item('individual_age_sorting',
label='Individual'),
label='Sorting')
appearence_grp = BorderVGroup(
HGroup(Item('hide_gridlines', label='Hide Gridlines'),
Item('repeat_header', label='Repeat Header')),
units_grp,
sigma_grp,
sort_grp,
HGroup(
Item('highlight_non_plateau'),
UItem('highlight_color',
enabled_when='highlight_non_plateau')),
label='Appearance')
def sigfig(k):
return '{}_sig_figs'.format(k)
def isigfig(k, label, **kw):
return Item(sigfig(k), width=-40, label=label, **kw)
sig_figs_grp = BorderVGroup(
Item('sig_figs', label='Default'),
HGroup(isigfig('age', 'Age'), isigfig('summary_age',
'Summary Age')),
HGroup(isigfig('kca', 'K/Ca'),
isigfig('summary_kca', 'Summary K/Ca')),
HGroup(isigfig('radiogenic_yield', '%40Ar*'),
isigfig('cumulative_ar39', 'Cum. %39Ar')),
HGroup(isigfig('signal', 'Signal'), isigfig('j', 'Flux')),
HGroup(isigfig('ic', 'IC'), isigfig('disc', 'Disc.')),
HGroup(isigfig('decay', 'Decay'),
isigfig('correction', 'Correction Factors')),
HGroup(isigfig('sens', 'Sensitivity'), isigfig('k2o', 'K2O')),
Item('ensure_trailing_zeros', label='Ensure Trailing Zeros'),
label='Significant Figures')
def inc(k):
return 'include_{}'.format(k)
def iinc(k, label, **kw):
return Item(inc(k), label=label, **kw)
arar_col_grp = VGroup(iinc('F', '40Ar*/39ArK'),
iinc('percent_ar39', 'Cumulative %39Ar'),
iinc('radiogenic_yield', '%40Ar*'),
iinc('sensitivity', 'Sensitivity'),
iinc('k2o', 'K2O wt. %'),
iinc('production_ratios', 'Production Ratios'),
iinc('isochron_ratios', 'Isochron Ratios'),
iinc('time_delta', 'Time since Irradiation'),
iinc('kca', 'K/Ca'),
iinc('kcl', 'K/Cl'),
Item('invert_kca_kcl', label='Invert K/Ca,K/Cl'),
VGroup(iinc('lambda_k', 'Lambda K'),
iinc('monitor_age', 'Age'),
iinc('monitor_name', 'Name'),
iinc('monitor_material', 'Material'),
label='Flux Monitor'),
label='Ar/Ar')
general_col_grp = VGroup(Item('status_enabled', label='Status'),
Item('analysis_label_enabled',
label='Analysis Label'),
Item('tag_enabled', label='Tag'),
iinc('rundate', 'Analysis RunDate'),
iinc('blanks', 'Applied Blank'),
iinc('intercepts', 'Intercepts'),
iinc('icfactors', 'ICFactors'),
iinc('discrimination', 'Discrimination'),
label='General')
summary_rows_grp = BorderVGroup(iinc('summary_kca', 'Integrated K/Ca'),
iinc('plateau_age', 'Plateau Age'),
iinc('integrated_age',
'Total Integrated Age'),
iinc('isochron_age', 'Isochron Age'),
iinc('trapped_ratio',
'Trapped (40/36)atm'),
label='Summary Rows')
columns_grp = BorderHGroup(general_col_grp,
arar_col_grp,
label='Columns')
unk_columns_grp = VGroup(HGroup(columns_grp, sig_figs_grp),
summary_rows_grp,
label='Unknowns')
g1 = VGroup(HGroup(grp, appearence_grp), label='Main')
def isum(k):
return inc('summary_{}'.format(k))
def iisum(k, label, **kw):
return Item(isum(k), label=label, **kw)
summary_grp = VGroup(
iisum('sheet', 'Summary Sheet'),
VGroup(iisum('sample', 'Sample'),
iisum('identifier', 'Identifier'),
iisum('unit', 'Unit'),
iisum('location', 'Location'),
iisum('material', 'Material'),
iisum('irradiation', 'Irradiation'),
iisum('age_type', 'Age Type'),
iisum('n', 'N'),
iisum('percent_ar39', '%39Ar'),
iisum('mswd', 'MSWD'),
HGroup(iisum('kca', 'KCA'),
Item('summary_kca_nsigma', label=SIGMA)),
HGroup(iisum('age', 'Age'),
Item('summary_age_nsigma', label=SIGMA)),
iisum('comments', 'Comments'),
enabled_when=isum('sheet'),
label='Columns',
show_border=True),
VGroup(UItem('summary_notes', style='custom'),
show_border=True,
label='Notes'),
label='Summary')
calc_grp = VGroup(J_ERROR_GROUP, label='Calc.')
v = okcancel_view(Tabbed(g1, unk_columns_grp, unknown_grp, calc_grp,
blank_grp, air_grp, monitor_grp, summary_grp),
resizable=True,
width=775,
height=0.75,
title='XLSX Analysis Table Options',
scrollable=True)
return v
def traits_view(self):
# self.sample_tabular_adapter.columns = [('Sample', 'name'),
# ('Material', 'material'),
# ('Grainsize', 'grainsize'),
# ('Project', 'project'),
# ('PI', 'principal_investigator'),
# ('Note', 'note')]
# tgrp = HGroup(icon_button_editor('clear_button', 'table_lightning',
# enabled_when='selected',
# tooltip='Clear contents of selected positions'))
pi_grp = VGroup(UItem('principal_investigator',
editor=EnumEditor(name='principal_investigator_names')),
show_border=True,
label='Principal Investigator')
project_grp = VGroup(UItem('projects',
editor=FilterTabularEditor(editable=False,
use_fuzzy=True,
selected='selected_projects',
adapter=ProjectAdapter(),
multi_select=True),
width=175),
show_border=True,
label='Projects')
sample_grp = VGroup(HGroup(UItem('sample_filter_parameter',
editor=EnumEditor(name='sample_filter_parameters')),
UItem('sample_filter',
editor=ComboboxEditor(name='sample_filter_values'),
width=75),
# icon_button_editor('edit_sample_button', 'database_edit',
# tooltip='Edit sample in database'),
# icon_button_editor('add_sample_button', 'database_add',
# tooltip='Add sample to database')
icon_button_editor('clear_sample_button', 'clear',
tooltip='Clear selected sample')),
UItem('samples',
editor=TabularEditor(adapter=self.sample_tabular_adapter,
editable=False,
refresh='pane.refresh_needed',
selected='selected_samples',
dclicked='dclicked',
multi_select=True,
column_clicked='column_clicked',
stretch_last_section=False),
width=75))
jgrp = HGroup(UItem('j'), Label(PLUSMINUS_ONE_SIGMA), UItem('j_err'),
icon_button_editor('estimate_j_button', 'cog', tooltip='Estimate J based on irradiation '
'chronology and the J/hr rate set in '
'Preferences/Entry'),
show_border=True, label='J')
ngrp = HGroup(UItem('note'),
Item('weight'),
show_border=True, label='Note')
# sgrp = HGroup(UItem('invert_flag'),
# Item('selection_freq', label='Freq'),
# show_border=True,
# label='Selection')
sagrp = HGroup(UItem('sample_search_str', tooltip='Search for sample from entire Database'),
show_border=True,
label='Sample')
g1 = VGroup(HGroup(pi_grp, sagrp),
project_grp)
g2 = VGroup(sample_grp,
HGroup(UItem('packet', tooltip='Packet label. Must be in the form '
'<number> or <prefix><number>. e.g. 1 or p1 or packet01'),
icon_button_editor('set_packet_event', 'arrow_right',
enabled_when='packet',
tooltip='Apply the Packet to current selection'),
Item('use_increment_packet', label='Auto-increment'),
show_border=True, label='Packet'),
HGroup(jgrp, ngrp))
v = View(VSplit(g1, g2), handler=IrradiationEditorHandler())
return v
