def setup(self,**kwargs):
self.tempdir = self.tempDirClass(**kwargs)
from pygr.downloader import SourceURL
try:
s = SourceURL('http://www.doe-mbi.ucla.edu/~leec/test.gz')
except socket.gaierror:
raise nose.SkipTest
s.__doc__ = 'test download'
import pygr.Data
pygr.Data.Bio.Test.Download1 = s
pygr.Data.save()
self.tempdir.force_reload()
def test_download(self):
"Downloading of gzipped file using pygr.Data"
url = SourceURL('http://www.doe-mbi.ucla.edu/~leec/test.gz')
url.__doc__ = 'test download'
worldbase.add_resource('Bio.Test.Download1', url)
worldbase.commit()
# performs the download
fpath = worldbase.Bio.Test.Download1()
h = testutil.get_file_md5(fpath)
self.assertEqual(h.hexdigest(), 'f95656496c5182d6cff9a56153c9db73')
os.remove(fpath)
def test_download(self):
"Downloading of gzipped file using pygr.Data"
url = SourceURL('http://www.doe-mbi.ucla.edu/~leec/test.gz')
url.__doc__ = 'test download'
pygr.Data.addResource('Bio.Test.Download1', url)
pygr.Data.save()
# performs the download
fpath = pygr.Data.Bio.Test.Download1()
h = testutil.get_file_md5(fpath)
self.assertEqual(h.hexdigest(), 'f95656496c5182d6cff9a56153c9db73')
os.remove(fpath)
def test_download(self):
"Downloading of gzipped file using metabase"
url = SourceURL("http://www.doe-mbi.ucla.edu/~leec/test.gz")
url.__doc__ = "test download"
self.metabase.add_resource("Bio.Test.Download1", url)
self.metabase.commit()
# performs the download
fpath = self.pygrData.Bio.Test.Download1()
h = testutil.get_file_md5(fpath)
self.assertEqual(h.hexdigest(), "f95656496c5182d6cff9a56153c9db73")
os.remove(fpath)
def create_downloadable_resource(url, mdb, name, doc):
dfile = SourceURL(url)
nbuilder = NLMSABuilder(dfile)
nbuilder.__doc__ = doc
mdb.add_resource(name, nbuilder)
mdb.commit()
