def test_readroi_inplace(self):
header = pyklb.readheader(self.testread_filepath)
lb = [9, 15, 15]
ub = [11, 99, 99]
img = np.zeros(1 + np.array(ub) - np.array(lb), header["datatype"])
pyklb.readroi_inplace(img,
self.testread_filepath,
lb,
ub,
nochecks=False)
self.assertEqual(round(np.mean(img)), 568)
img = np.zeros(1 + np.array(ub) - np.array(lb), header["datatype"])
pyklb.readroi_inplace(img,
self.testread_filepath,
lb,
ub,
nochecks=True)
self.assertEqual(round(np.mean(img)), 568)
img = np.zeros(1 + np.array(ub) - np.array(lb), np.uint8)
with self.assertRaises(TypeError):
pyklb.readroi_inplace(img, self.testread_filepath, lb, ub)
img = np.zeros([666, 666], header["datatype"])
with self.assertRaises(IOError):
pyklb.readroi_inplace(img, self.testread_filepath, lb, ub)
img = np.zeros(1 + np.array(ub) - np.array(lb), header["datatype"])
with self.assertRaises(IOError):
pyklb.readroi_inplace(img, self.testread_filepath, ub, lb)
def execute(self, slot, subindex, roi, result):
if result.flags.c_contiguous:
pyklb.readroi_inplace(result,
self._filepath,
roi.start,
roi.stop - 1,
nochecks=False)
else:
result[:] = pyklb.readroi(self._filepath, roi.start, roi.stop - 1)
def test_readroi_inplace(self):
header = pyklb.readheader(self.testread_filepath)
lb = [9, 15, 15]
ub = [11, 99, 99]
img = np.zeros(1 + np.array(ub) - np.array(lb), header["datatype"])
pyklb.readroi_inplace(img, self.testread_filepath, lb, ub, nochecks=False)
self.assertEqual(round(np.mean(img)), 568)
img = np.zeros(1 + np.array(ub) - np.array(lb), header["datatype"])
pyklb.readroi_inplace(img, self.testread_filepath, lb, ub, nochecks=True)
self.assertEqual(round(np.mean(img)), 568)
img = np.zeros(1 + np.array(ub) - np.array(lb), np.uint8)
with self.assertRaises(TypeError):
pyklb.readroi_inplace(img, self.testread_filepath, lb, ub)
img = np.zeros([666, 666], header["datatype"])
with self.assertRaises(IOError):
pyklb.readroi_inplace(img, self.testread_filepath, lb, ub)
img = np.zeros(1 + np.array(ub) - np.array(lb), header["datatype"])
with self.assertRaises(IOError):
pyklb.readroi_inplace(img, self.testread_filepath, ub, lb)
def execute(self, slot, subindex, roi, result):
if result.flags.c_contiguous:
pyklb.readroi_inplace(result, self._filepath, roi.start, roi.stop-1, nochecks=False)
else:
result[:] = pyklb.readroi(self._filepath, roi.start, roi.stop-1)
