def setUp(self):
self.rm = pymaid.CatmaidInstance(
config_test.server_url,
config_test.http_user,
config_test.http_pw,
config_test.token)
self.n = pymaid.get_neuron(config_test.test_skids[0],
remote_instance=self.rm)
self.cn_table = pymaid.get_partners(config_test.test_skids[0],
remote_instance=self.rm)
self.nB = pymaid.get_neuron(self.cn_table.iloc[0].skeleton_id,
remote_instance=self.rm)
self.adj = pymaid.adjacency_matrix(
self.cn_table[self.cn_table.relation == 'upstream'].iloc[:10].skeleton_id.values)
def test_get_cn_table(self):
self.assertIsInstance(pymaid.get_partners('annotation:%s' % config_test.test_annotations[
0], remote_instance=self.rm), pd.DataFrame)
def test_get_partners(self):
self.assertIsInstance(pymaid.get_partners(
config_test.test_skids[0], remote_instance=self.rm), pd.DataFrame)