def _to_xml(self):
df = self.ui.table_include.model().dataframe()
include_common = self.ui.check_include_common.isChecked()
fgdc_taxonomy = taxonomy.gen_taxonomy_section(
keywords=list(df.item),
tsns=list(df.tsn),
include_common_names=include_common)
return fgdc_taxonomy
def _to_xml(self):
df = self.ui.table_include.model().dataframe()
include_common = self.ui.check_include_common.isChecked()
unique_id = tuple([tuple(df.tsn), include_common])
if unique_id not in self.xml_lookup:
fgdc_taxonomy = taxonomy.gen_taxonomy_section(keywords=list(df.item),
tsns=list(df.tsn), include_common_names=include_common)
self.xml_lookup[unique_id] = fgdc_taxonomy
return self.xml_lookup[unique_id]
def test_gen_fgdc_taxonomy():
fgdc_taxonomy = taxonomy.gen_fgdc_taxoncl(tsns=[180694])
assert fgdc_taxonomy.tag == "taxoncl"
assert fgdc_taxonomy.getchildren()[1].text == "Animalia"
# Add a plant, so that the top level is Domain==Eukaryota
fgdc_taxonomy = taxonomy.gen_fgdc_taxoncl(tsns=[180694, 183437])
assert fgdc_taxonomy.getchildren()[1].text == "Eukaryota"
# Add a bacteria, so that the top level is Domain==Life
fgdc_taxonomy = taxonomy.gen_fgdc_taxoncl(tsns=[180694, 183437, 951930])
assert fgdc_taxonomy.getchildren()[1].text == "Life"
fgdc_taxonomy = taxonomy.gen_taxonomy_section(keywords=["test", "test2"],
tsns=[180694, 183437])
assert fgdc_taxonomy.tag == "taxonomy"
def test_gen_fgdc_taxonomy():
fgdc_taxonomy = taxonomy.gen_fgdc_taxoncl(tsns=[180694])
assert fgdc_taxonomy.tag == 'taxoncl'
assert fgdc_taxonomy.getchildren()[1].text == 'Animalia'
# Add a plant, so that the top level is Domain==Eukaryota
fgdc_taxonomy = taxonomy.gen_fgdc_taxoncl(tsns=[180694, 183437])
assert fgdc_taxonomy.getchildren()[1].text == 'Eukaryota'
# Add a bacteria, so that the top level is Domain==Life
fgdc_taxonomy = taxonomy.gen_fgdc_taxoncl(tsns=[180694, 183437, 951930])
assert fgdc_taxonomy.getchildren()[1].text == 'Life'
fgdc_taxonomy = taxonomy.gen_taxonomy_section(keywords=['test', 'test2'],
tsns=[180694, 183437])
assert fgdc_taxonomy.tag == 'taxonomy'