def run_calculation(
reference_results,
evaluation_results,
gamma_options,
escan_directory,
png_output_directory,
):
st.write("Calculating Reference MU Density...")
reference_mudensity = calculate_batch_mudensity(
reference_results["deliveries"])
st.write("Calculating Evaluation MU Density...")
evaluation_mudensity = calculate_batch_mudensity(
evaluation_results["deliveries"])
st.write("Calculating Gamma...")
gamma = calculate_gamma(reference_mudensity, evaluation_mudensity,
gamma_options)
patient_id = reference_results["patient_id"]
st.write("Creating figure...")
output_base_filename = (
f"{patient_id} {reference_results['identifier']} vs "
f"{evaluation_results['identifier']}")
pdf_filepath = str(
escan_directory.joinpath(f"{output_base_filename}.pdf").resolve())
png_record_directory = png_output_directory.joinpath(output_base_filename)
png_record_directory.mkdir(exist_ok=True)
png_filepath = str(png_record_directory.joinpath("report.png").resolve())
try:
patient_name_text = f"Patient Name: {reference_results['patient_name']}\n"
except KeyError:
patient_name_text = ""
header_text = (f"Patient ID: {patient_id}\n"
f"{patient_name_text}"
f"Reference: {reference_results['identifier']}\n"
f"Evaluation: {evaluation_results['identifier']}\n")
reference_path_strings = "\n ".join(
[str(path.resolve()) for path in reference_results["data_paths"]])
evaluation_path_strings = "\n ".join(
[str(path.resolve()) for path in evaluation_results["data_paths"]])
footer_text = (f"reference path(s): {reference_path_strings}\n"
f"evaluation path(s): {evaluation_path_strings}\n"
f"png record: {png_filepath}")
fig = plot_and_save_results(
reference_mudensity,
evaluation_mudensity,
gamma,
gamma_options,
png_record_directory,
header_text=header_text,
footer_text=footer_text,
)
fig.tight_layout()
st.write("Saving figure...")
plt.savefig(png_filepath, dpi=100)
try:
subprocess.check_call(
f'magick convert "{png_filepath}" "{pdf_filepath}"', shell=True)
except subprocess.CalledProcessError:
st.write(
UnableToCreatePDF(
"Please install Image Magick to create PDF reports "
"<https://imagemagick.org/script/download.php#windows>."))
st.write("## Results")
st.pyplot()
def run_calculation(
reference_results,
evaluation_results,
gamma_options,
escan_directory,
png_output_directory,
):
st.write("Calculating Reference MU Density...")
reference_mudensity = calculate_batch_mudensity(
reference_results["deliveries"])
st.write("Calculating Evaluation MU Density...")
evaluation_mudensity = calculate_batch_mudensity(
evaluation_results["deliveries"])
st.write("Calculating Gamma...")
gamma = calculate_gamma(reference_mudensity, evaluation_mudensity,
gamma_options)
patient_id = reference_results["patient_id"]
st.write("Creating figure...")
output_base_filename = (
f"{patient_id} {reference_results['identifier']} vs "
f"{evaluation_results['identifier']}")
pdf_filepath = str(
escan_directory.joinpath(f"{output_base_filename}.pdf").resolve())
png_record_directory = png_output_directory.joinpath(output_base_filename)
png_record_directory.mkdir(exist_ok=True)
png_filepath = str(png_record_directory.joinpath("report.png").resolve())
try:
patient_name_text = f"Patient Name: {reference_results['patient_name']}\n"
except KeyError:
patient_name_text = ""
header_text = (f"Patient ID: {patient_id}\n"
f"{patient_name_text}"
f"Reference: {reference_results['identifier']}\n"
f"Evaluation: {evaluation_results['identifier']}\n")
reference_path_strings = "\n ".join(
[str(path.resolve()) for path in reference_results["data_paths"]])
evaluation_path_strings = "\n ".join(
[str(path.resolve()) for path in evaluation_results["data_paths"]])
footer_text = (f"reference path(s): {reference_path_strings}\n"
f"evaluation path(s): {evaluation_path_strings}\n"
f"png record: {png_filepath}")
fig = plot_and_save_results(
reference_mudensity,
evaluation_mudensity,
gamma,
gamma_options,
png_record_directory,
header_text=header_text,
footer_text=footer_text,
)
fig.tight_layout()
st.write("## Results")
st.pyplot(fig)
st.write("## Saving reports")
st.write("### PNG")
st.write("Saving figure as PNG...")
plt.savefig(png_filepath, dpi=100)
st.write(f"Saved:\n\n`{png_filepath}`")
convert_png_to_pdf(png_filepath, pdf_filepath)