def __init__(self, **keywords): """ 2012.2.8 """ AbstractNGSWorkflow.__init__(self, **keywords) if self.isq_id_ls: self.isq_id_ls = getListOutOfStr(self.isq_id_ls, data_type=int)
def __init__(self, **keywords): """ 2012.3.21 """ AbstractNGSWorkflow.__init__(self, **keywords) #bwa and stampy are not used but added because it inherits ShortRead2AlignmentPipeline's registerCustomExecutables(). self.bwa_path = self.insertHomePath(self.bwa_path, self.home_path) self.stampy_path = self.insertHomePath(self.stampy_path, self.home_path)
