def build_protocol_middle_frame(self):
n_tot_sequences = len(self.protocol.a3m_content) - 1
# Sub-frame created to select the number of sequences to import.
range_label = "Import the first n. sequences (tot: {})".format(
n_tot_sequences)
self.range_subframe = PyMod_hbox_option_qt(label_text=range_label)
# Spinbox to select the number of sequences to import.
self.seqs_to_import_spinbox = QtWidgets.QSpinBox()
self.seqs_to_import_spinbox.setRange(1, n_tot_sequences)
self.seqs_to_import_spinbox.setValue(min((100, n_tot_sequences)))
self.range_subframe.hbox.addWidget(self.seqs_to_import_spinbox)
self.range_subframe.set_auto_input_widget_width()
self.middle_formlayout.add_widget_to_align(self.range_subframe)
def __init__(self,
label_text="Input",
value=1,
spinbox_min=1,
spinbox_max=100):
PyMod_form_item.__init__(self)
# Label.
self.label = QtWidgets.QLabel(label_text)
# Spinbox.
self.spinbox = QtWidgets.QSpinBox()
self.spinbox_min = spinbox_min
self.spinbox_max = spinbox_max
self.spinbox.setRange(self.spinbox_min, self.spinbox_max)
self.spinbox.setStyleSheet(active_entry_style)
self.input = self.spinbox
def add_middle_frame_widgets(self):
# Units combobox.
self.unit_combobox = PyMod_combobox_qt(label_text="Unit Selection",
items=self.protocol.units_list)
self.unit_combobox.combobox.setCurrentIndex(0)
self.middle_formlayout.add_widget_to_align(self.unit_combobox)
# Color combobox.
self.color_combobox = PyMod_combobox_qt(label_text="Color Scheme Selection",
items=self.protocol.colorscheme_list)
self.color_combobox.combobox.setCurrentIndex(5)
self.middle_formlayout.add_widget_to_align(self.color_combobox)
# Sub-frame created to display entries for Logo Range option.
self.range_subframe = PyMod_hbox_option_qt(label_text="Logo Range")
# Logo start position spinbox.
self.logo_start = QtWidgets.QSpinBox()
self.logo_start.setRange(1, self.protocol.ali_length)
self.range_subframe.hbox.addWidget(self.logo_start)
# Separator dash.
self.logo_range_dash = QtWidgets.QLabel(" - ")
self.range_subframe.hbox.addWidget(self.logo_range_dash)
# Logo end position spinbox.
self.logo_end = QtWidgets.QSpinBox()
self.logo_end.setRange(1, self.protocol.ali_length)
self.logo_end.setValue(self.protocol.ali_length)
self.range_subframe.hbox.addWidget(self.logo_end)
self.range_subframe.set_auto_input_widget_width()
self.middle_formlayout.add_widget_to_align(self.range_subframe)
# ADVANCED OPTIONS.
self.show_advanced_button()
# Logo format combobox.
self.format_combobox = PyMod_combobox_qt(label_text='Logo Format',
items=self.protocol.format_list)
self.format_combobox.combobox.setCurrentIndex(0)
self.middle_formlayout.add_widget_to_align(self.format_combobox, advanced_option=True)
# LOGO title entry.
self.logo_title_enf = PyMod_entryfield_qt(label_text="Logo Title",
value='')
self.middle_formlayout.add_widget_to_align(self.logo_title_enf, advanced_option=True)
# Stacks per line entry.
self.logo_stacks_enf = PyMod_entryfield_qt(label_text="Stacks per line",
value='80',
validate={'validator': 'integer',
'min': 0, 'max': 100})
self.middle_formlayout.add_widget_to_align(self.logo_stacks_enf, advanced_option=True)
# Scale stacks width.
self.scale_width_rds = PyMod_radioselect_qt(label_text="Scale stacks width",
buttons=('Yes', 'No'))
self.scale_width_rds.setvalue("No")
self.middle_formlayout.add_widget_to_align(self.scale_width_rds, advanced_option=True)
# Show error bars.
self.show_error_rds = PyMod_radioselect_qt(label_text="Show error bars",
buttons=('Yes', 'No'))
self.show_error_rds.setvalue("No")
self.middle_formlayout.add_widget_to_align(self.show_error_rds, advanced_option=True)
self.middle_formlayout.set_input_widgets_width(175)
def __init__(self, parent=None):
super(SurfStampFrame, self).__init__(parent)
self.layout = QtWidgets.QVBoxLayout()
self.setLayout(self.layout)
glayout1 = QtWidgets.QGridLayout()
self.label_message = QtWidgets.QLabel(self)
self.label_message.setText("SurfStamp PyMOL plugin")
self.layout.addWidget(self.label_message)
self.combo_model = QtWidgets.QComboBox()
self.combo_model.addItems([])
self.layout.addWidget(self.combo_model)
self.label_reso = QtWidgets.QLabel(self)
self.label_reso.setText("Surface Resolution")
glayout1.addWidget(self.label_reso, 1, 0)
self.spin_reso = QtWidgets.QDoubleSpinBox(self)
self.spin_reso.setRange(0.1, 1.0)
self.spin_reso.setSingleStep(0.05)
self.spin_reso.setValue(0.7)
glayout1.addWidget(self.spin_reso, 1, 1)
self.label_imagesize = QtWidgets.QLabel(self)
self.label_imagesize.setText("Image Size")
glayout1.addWidget(self.label_imagesize, 2, 0)
self.spin_imagesize = QtWidgets.QSpinBox(self)
self.spin_imagesize.setRange(1000, 10000)
#PILLOW？は 13000 くらいが Max っぽい
self.spin_imagesize.setSingleStep(100)
self.spin_imagesize.setValue(4000)
glayout1.addWidget(self.spin_imagesize, 2, 1)
self.label_fontsize = QtWidgets.QLabel(self)
self.label_fontsize.setText("Font Size")
glayout1.addWidget(self.label_fontsize, 3, 0)
self.spin_fontsize = QtWidgets.QSpinBox(self)
self.spin_fontsize.setRange(3, 100)
self.spin_fontsize.setSingleStep(1)
self.spin_fontsize.setValue(20)
glayout1.addWidget(self.spin_fontsize, 3, 1)
glayout2 = QtWidgets.QGridLayout()
self.check_outline = QtWidgets.QCheckBox('Outline')
self.check_outline.setChecked(True)
glayout2.addWidget(self.check_outline, 0, 0)
self.check_nowater = QtWidgets.QCheckBox('Remove Waters')
self.check_nowater.setChecked(True)
glayout2.addWidget(self.check_nowater, 0, 1)
self.check_colorall = QtWidgets.QCheckBox('Color All')
self.check_colorall.setChecked(False)
glayout2.addWidget(self.check_colorall, 1, 0)
self.check_tile = QtWidgets.QCheckBox('Repeating Tile')
self.check_tile.clicked.connect(self.checkTileOn)
self.check_tile.setChecked(False)
glayout2.addWidget(self.check_tile, 1, 1)
self.check_oneletter = QtWidgets.QCheckBox('One Letter')
glayout2.addWidget(self.check_oneletter, 2, 0)
self.check_nochainname = QtWidgets.QCheckBox('No Chain Name')
glayout2.addWidget(self.check_nochainname, 2, 1)
self.check_ignore_occupancy = QtWidgets.QCheckBox('Ignore Occupancy')
glayout2.addWidget(self.check_ignore_occupancy, 3, 0)
self.check_cartoon = QtWidgets.QCheckBox('Cartoon')
self.check_cartoon.clicked.connect(self.checkCartoonOn)
glayout2.addWidget(self.check_cartoon, 3, 1)
self.check_mmcif = QtWidgets.QCheckBox('Use MMCIF')
glayout2.addWidget(self.check_mmcif, 4, 0)
self.check_builtin = QtWidgets.QCheckBox('Built-in Surface Generator')
glayout2.addWidget(self.check_builtin, 4, 1)
self.check_builtin.clicked.connect(self.checkBuiltinOn)
#MMCIF は AUTH が不完全だ！
#self.check_label = QtWidgets.QCheckBox('ID Label');
#self.layout.addWidget(self.check_label);
# Text field for output file
glayout4 = QtWidgets.QVBoxLayout()
self.label_outprefix = QtWidgets.QLabel(
'Output Prefix (Prefix+<something> will be overwritten.)')
glayout4.addWidget(self.label_outprefix)
glayout4b = QtWidgets.QGridLayout()
self.text_outprefix = QtWidgets.QLineEdit(self)
self.text_outprefix.setReadOnly(True)
glayout4b.addWidget(self.text_outprefix, 0, 0)
self.button_outprefix = QtWidgets.QPushButton(self)
self.button_outprefix.setText("Save As")
self.button_outprefix.clicked.connect(self.getFile)
self.text_outprefix.setStyleSheet("background-color: lightgray;")
glayout4b.addWidget(self.button_outprefix, 0, 1)
glayout4.addLayout(glayout4b)
glayout3 = QtWidgets.QGridLayout()
self.button_ok = QtWidgets.QPushButton('Create')
self.button_ok.clicked.connect(self.runSurfStamp)
glayout3.addWidget(self.button_ok, 0, 0)
self.button_close = QtWidgets.QPushButton('Close')
self.button_close.clicked.connect(self.hide)
glayout3.addWidget(self.button_close, 0, 1)
self.layout.addLayout(glayout1)
self.layout.addLayout(glayout2)
self.layout.addLayout(glayout4)
self.layout.addLayout(glayout3)
screengeom = QtWidgets.qApp.desktop().screenGeometry()
wwidth = 300
hheight = 200
self.setGeometry(screengeom.width() / 2 - wwidth / 2,
screengeom.height() / 2 - hheight / 2, wwidth,
hheight)
self.setWindowTitle('SurfStamp')
self.checkTileOn()
self.checkBuiltinOn()
self.checkCartoonOn()
self.show()
