def test(self):
cmd.set('suspend_updates')
cmd.set('depth_cue', 0)
cmd.set('ambient', 1)
cmd.set('specular', 0)
cmd.set('stereo_angle', 10)
cmd.pseudoatom()
cmd.show_as('sphere')
cmd.zoom()
cmd.stereo('anaglyph')
cmd.set('suspend_updates', 0)
wh = (40, 40)
cmd.draw(*wh, antialias=0)
cmd.sync()
img = self.get_imagearray(prior=1)
self.assertEqual(wh, img.shape[:2])
# ray tracing and shaders in PyMOL 1.7.6+:
# 0xe50000
# 0x00e5e5
# -> delta=26 (0x1a)
self.assertImageHasColor('0xff0000', img, delta=0x1a)
self.assertImageHasColor('0x00ffff', img, delta=0x1a)
def test(self):
cmd.set('suspend_updates')
cmd.set('depth_cue', 0)
cmd.set('ambient', 1)
cmd.set('specular', 0)
cmd.set('stereo_angle', 10)
cmd.pseudoatom()
cmd.show_as('sphere')
cmd.zoom()
cmd.stereo('anaglyph')
cmd.set('suspend_updates', 0)
wh = (40, 40)
cmd.draw(*wh, antialias=0)
cmd.sync()
img = self.get_imagearray(prior=1)
self.assertEqual(wh, img.shape[:2])
# ray tracing and shaders in PyMOL 1.7.6+:
# 0xe50000
# 0x00e5e5
# -> delta=26 (0x1a)
self.assertImageHasColor('0xff0000', img, delta=0x1a)
self.assertImageHasColor('0x00ffff', img, delta=0x1a)
def __init__(self, name="cartoon", mono=None, _self=cmd):
Wizard.__init__(self,_self)
self.message = []
self.last = None
cmd.full_screen("off")
if not mono:
cmd.stereo("on")
if 'last' in saved:
self.last = saved['last']
self.launch(name)
def __init__(self, *arg, **kw):
_self = kw.get('_self', cmd)
Wizard.__init__(self, _self)
self.message = []
self.last = None
cmd.full_screen("off")
if not ("mono" in list(kw.keys())):
cmd.stereo("on")
cmd.set("sphere_mode", "5")
if 'last' in saved:
self.last = saved['last']
if len(arg):
self.launch(arg[0])
else:
self.launch("cartoon")
def __init__(self,*arg,**kw):
_self=kw.get('_self',cmd)
Wizard.__init__(self,_self)
self.message = []
self.last = None
cmd.full_screen("off")
if not ("mono" in list(kw.keys())):
cmd.stereo("on")
cmd.set("sphere_mode","5")
if 'last' in saved:
self.last = saved['last']
if len(arg):
self.launch(arg[0])
else:
self.launch("cartoon")
def testStereo(self):
for (k, v) in cmd.stereo_dict.items():
if v < 1:
continue
cmd.stereo(k)
self.assertTrue(cmd.get_setting_int('stereo'))
self.assertEqual(cmd.get_setting_int('stereo_mode'), v)
cmd.stereo('off')
self.assertFalse(cmd.get_setting_int('stereo'))
cmd.stereo('on')
self.assertTrue(cmd.get_setting_int('stereo'))
shift = cmd.get_setting_float('stereo_shift')
cmd.stereo('swap')
self.assertAlmostEqual(cmd.get_setting_float('stereo_shift'), -shift)
def testStereo(self):
for (k,v) in cmd.stereo_dict.items():
if v < 1:
continue
cmd.stereo(k)
self.assertTrue(cmd.get_setting_int('stereo'))
self.assertEqual(cmd.get_setting_int('stereo_mode'), v)
cmd.stereo('off')
self.assertFalse(cmd.get_setting_int('stereo'))
cmd.stereo('on')
self.assertTrue(cmd.get_setting_int('stereo'))
shift = cmd.get_setting_float('stereo_shift')
cmd.stereo('swap')
self.assertAlmostEqual(cmd.get_setting_float('stereo_shift'), -shift)
def initPymol(self):
# set stereo mode
cmd.set('stereo_mode', 3)
cmd.stereo()
# get rid of gui
cmd.set('internal_gui', 0)
# set resolution to HD for rift
cmd.viewport(1920, 1080)
# full screen?
if self.fullscreen:
cmd.full_screen('on')
# load pdb
if len(self.pdb) == 4 and self.pdb == re.match('[a-zA-Z0-9]*',
self.pdb).group(0):
cmd.fetch(self.pdb, async=0)
if self.editMolecule == True:
cmd.hide('everything', 'all')
cmd.show('cartoon', 'all')
# color each chain differently
if self.editMolecule:
util.cbc()
# set origin at camera
if self.naturalRotation:
self.setOriginAtCamera()
# move slab away to give a comfortable viewing area
cmd.clip('move', 10)
# jiggle the camera to deal with blank screen error
cmd.move('z', .0001)
try:
# Importing the PyMOL module will create the window.
import pymol #@UnresolvedImport
from pymol import cmd #@UnresolvedImport
except:
print "Failed to import pymol; python will stack dump next:"
# Tell PyMOL we don't want any GUI features.
__main__.pymol_argv = [ 'pymol', '-Gi' ]
# Call the function below before using any PyMOL modules.
pymol.finish_launching()
cmd.stereo('walleye')
cmd.set('stereo_shift', 0.23)
cmd.set('stereo_angle', 1.0)
cmd.spectrum()
try:
pdbCode = '1brv'
pdbFile = urllib2.urlopen('file:///Users/jd/workspace35/cing/data/Tests/pdb/'+
pdbCode + '/pdb' +
pdbCode + '.ent')
cmd.read_pdbstr(pdbFile.read(), pdbCode)
except:
print "Unexpected error:", sys.exc_info()[0]
time.sleep(5)
# cmd.show("sticks","sculpt")
cmd.show("spheres", "sculpt")
# cmd.set("sphere_transparency","0.75","sculpt")
# cmd.set("sphere_color","grey","sculpt")
cmd.frame(1)
cmd.set("auto_sculpt", 1)
cmd.set("sculpting", 1)
cmd.sculpt_activate("sculpt")
cmd.set("sculpting_cycles", "100")
cmd.do("edit_mode")
cmd.set("valence", "0.05")
cmd.set("suspend_updates", 0, quiet=0)
cmd.sculpt_iterate("sculpt")
cmd.alter_state(1, "sculpt", "x=x*1.5;y=y*0.1;z=z*1.5")
cmd.zoom()
cmd.unpick()
else:
cmd.set("valence", "0")
cmd.set("sculpting", 0)
cmd.set("auto_sculpt", 0)
cmd.delete("sculpt")
cmd.mouse()
if __name__ == 'pymol':
pymol.wizard.stereodemo = Stereodemo()
cmd.set_wizard(pymol.wizard.stereodemo)
cmd.stereo("on")
cmd.set("max_threads", 4)
def stereo_switch(tag):
if tag == 'Off':
cmd.stereo('off')
elif tag == 'Quad':
cmd.stereo('off')
cmd.stereo('cross')
cmd.stereo('quadbuffer')
cmd.stereo('on')
elif tag == 'Cross-Eye':
cmd.stereo('off')
cmd.stereo('cross')
cmd.stereo('on')
else:
cmd.stereo('off')
cmd.stereo('walleye')
cmd.stereo('on')
# cmd.show("sticks","sculpt")
cmd.show("spheres","sculpt")
# cmd.set("sphere_transparency","0.75","sculpt")
# cmd.set("sphere_color","grey","sculpt")
cmd.frame(1)
cmd.set("auto_sculpt",1)
cmd.set("sculpting",1)
cmd.sculpt_activate("sculpt")
cmd.set("sculpting_cycles","100")
cmd.do("edit_mode")
cmd.set("valence","0.05")
cmd.set("suspend_updates",0,quiet=0)
cmd.sculpt_iterate("sculpt")
cmd.alter_state(1,"sculpt","x=x*1.5;y=y*0.1;z=z*1.5")
cmd.zoom()
cmd.unpick()
else:
cmd.set("valence","0")
cmd.set("sculpting",0)
cmd.set("auto_sculpt",0)
cmd.delete("sculpt")
cmd.mouse()
if __name__=='pymol':
pymol.wizard.stereodemo = Stereodemo()
cmd.set_wizard(pymol.wizard.stereodemo)
cmd.stereo("on")
cmd.set("max_threads",4)
def test(self):
cmd.set('bg_rgb', 'red')
cmd.stereo('anaglyph')
self.assertImageHasColor('red')
try:
# Importing the PyMOL module will create the window.
import pymol #@UnresolvedImport
from pymol import cmd #@UnresolvedImport
except:
print "Failed to import pymol; python will stack dump next:"
# Tell PyMOL we don't want any GUI features.
__main__.pymol_argv = ['pymol', '-Gi']
# Call the function below before using any PyMOL modules.
pymol.finish_launching()
cmd.stereo('walleye')
cmd.set('stereo_shift', 0.23)
cmd.set('stereo_angle', 1.0)
cmd.spectrum()
try:
pdbCode = '1brv'
pdbFile = urllib2.urlopen(
'file:///Users/jd/workspace35/cing/Tests/data/pdb/' + pdbCode +
'/pdb' + pdbCode + '.ent')
cmd.read_pdbstr(pdbFile.read(), pdbCode)
except:
print "Unexpected error:", sys.exc_info()[0]
time.sleep(5)
def stereo_switch(tag):
if tag == 'Off':
cmd.stereo('off')
elif tag == 'Quad':
cmd.stereo('off')
cmd.stereo('cross')
cmd.stereo('quadbuffer')
cmd.stereo('on')
elif tag == 'Cross-Eye':
cmd.stereo('off')
cmd.stereo('cross')
cmd.stereo('on')
else:
cmd.stereo('off')
cmd.stereo('walleye')
cmd.stereo('on')
