def setup_index_generation_helpers(self, neurons: List[ASTNeuron]):
"""
Returns a namespace for Jinja2 neuron model index page template.
:param neurons: a list of neuron instances
:type neurons: List[ASTNeuron]
:return: a map from name to functionality.
:rtype: dict
"""
converter = LatexReferenceConverter()
latex_expression_printer = LatexExpressionPrinter(converter)
namespace = dict()
namespace['now'] = datetime.datetime.utcnow()
namespace['neurons'] = neurons
namespace['neuronNames'] = [
str(neuron.get_name()) for neuron in neurons
]
namespace['printer'] = NestPrinter(latex_expression_printer)
namespace['assignments'] = NestAssignmentsHelper()
namespace['names'] = NestNamesConverter()
namespace['declarations'] = NestDeclarationsHelper()
namespace['utils'] = ASTUtils()
namespace['odeTransformer'] = OdeTransformer()
return namespace
def setup_model_generation_helpers(self, neuron: ASTNeuron):
"""
Returns a namespace for Jinja2 neuron model documentation template.
:param neuron: a single neuron instance
:type neuron: ASTNeuron
:return: a map from name to functionality.
:rtype: dict
"""
converter = LatexReferenceConverter()
latex_expression_printer = LatexExpressionPrinter(converter)
namespace = dict()
namespace['now'] = datetime.datetime.utcnow()
namespace['neuron'] = neuron
namespace['neuronName'] = str(neuron.get_name())
namespace['printer'] = NestPrinter(latex_expression_printer)
namespace['assignments'] = NestAssignmentsHelper()
namespace['names'] = NestNamesConverter()
namespace['declarations'] = NestDeclarationsHelper()
namespace['utils'] = ASTUtils()
namespace['odeTransformer'] = OdeTransformer()
import textwrap
pre_comments_bak = neuron.pre_comments
neuron.pre_comments = []
namespace['neuron_source_code'] = textwrap.indent(
neuron.__str__(), " ")
neuron.pre_comments = pre_comments_bak
return namespace
def __init__(self):
# setup the template environment
env = Environment(loader=FileSystemLoader(os.path.join(os.path.dirname(__file__), 'resources_autodoc')))
self._template_nestml_models_index = env.get_template('nestml_models_index.jinja2')
# setup the module class template
self._template_neuron_nestml_model = env.get_template('nestml_neuron_model.jinja2')
self._template_synapse_nestml_model = env.get_template('nestml_synapse_model.jinja2')
self._printer = LatexExpressionPrinter()