def test_time_string_fidelity(self): it1 = IonTime() ntp_str = it1.to_string() it2 = IonTime.from_string(ntp_str) self.assertEquals(it1.seconds,it2.seconds) self.assertTrue(np.abs(it1.useconds - it2.useconds) <= 1)
def test_time_string_fidelity(self): it1 = IonTime() ntp_str = it1.to_string() it2 = IonTime.from_string(ntp_str) self.assertEquals(it1.seconds, it2.seconds) self.assertTrue(np.abs(it1.useconds - it2.useconds) <= 1)
def create_basic_deployment(self, name='', description=''): start = IonTime(datetime.datetime(2013,1,1)) end = IonTime(datetime.datetime(2014,1,1)) temporal_bounds = IonObject(OT.TemporalBounds, name='planned', start_datetime=start.to_string(), end_datetime=end.to_string()) deployment_obj = IonObject(RT.Deployment, name=name, description=description, context=IonObject(OT.CabledNodeDeploymentContext), constraint_list=[temporal_bounds]) return self.OMS.create_deployment(deployment_obj)
def test_ntp_compatability(self): unix_day = IonTime(datetime.datetime(1970,1,1)) self.assertEquals(unix_day.era , 0) self.assertEquals(unix_day.seconds , 2208988800) utc_day = IonTime(datetime.datetime(1972,1,1)) self.assertEquals(utc_day.era , 0) self.assertEquals(utc_day.seconds , 2272060800) millen_day = IonTime(datetime.datetime(2000,1,1)) self.assertEquals(millen_day.era , 0) self.assertEquals(millen_day.seconds , 3155673600) ntp_era1 = IonTime(datetime.datetime(2036,2,8)) self.assertEquals(ntp_era1.era , 1) self.assertEquals(ntp_era1.seconds , 63104) self.assertEquals(ntp_era1.to_unix() , 2086041600.)
def test_create_deployment(self): #create a deployment with metadata and an initial site and device platform_site__obj = IonObject(RT.PlatformSite, name='PlatformSite1', description='test platform site') site_id = self.omsclient.create_platform_site(platform_site__obj) platform_device__obj = IonObject(RT.PlatformDevice, name='PlatformDevice1', description='test platform device') device_id = self.imsclient.create_platform_device(platform_device__obj) start = IonTime(datetime.datetime(2013,1,1)) end = IonTime(datetime.datetime(2014,1,1)) temporal_bounds = IonObject(OT.TemporalBounds, name='planned', start_datetime=start.to_string(), end_datetime=end.to_string()) deployment_obj = IonObject(RT.Deployment, name='TestDeployment', description='some new deployment', constraint_list=[temporal_bounds]) deployment_id = self.omsclient.create_deployment(deployment_obj) self.omsclient.deploy_platform_site(site_id, deployment_id) self.imsclient.deploy_platform_device(device_id, deployment_id) log.debug("test_create_deployment: created deployment id: %s ", str(deployment_id) ) #retrieve the deployment objects and check that the assoc site and device are attached read_deployment_obj = self.omsclient.read_deployment(deployment_id) log.debug("test_create_deployment: created deployment obj: %s ", str(read_deployment_obj) ) site_ids, _ = self.rrclient.find_subjects(RT.PlatformSite, PRED.hasDeployment, deployment_id, True) self.assertEqual(len(site_ids), 1) device_ids, _ = self.rrclient.find_subjects(RT.PlatformDevice, PRED.hasDeployment, deployment_id, True) self.assertEqual(len(device_ids), 1) #delete the deployment self.RR2.pluck(deployment_id) self.omsclient.force_delete_deployment(deployment_id) # now try to get the deleted dp object try: self.omsclient.read_deployment(deployment_id) except NotFound: pass else: self.fail("deleted deployment was found during read")
def test_create_deployment(self): #create a deployment with metadata and an initial site and device platform_site__obj = IonObject(RT.PlatformSite, name='PlatformSite1', description='test platform site') site_id = self.omsclient.create_platform_site(platform_site__obj) platform_device__obj = IonObject(RT.PlatformDevice, name='PlatformDevice1', description='test platform device') device_id = self.imsclient.create_platform_device(platform_device__obj) start = IonTime(datetime.datetime(2013,1,1)) end = IonTime(datetime.datetime(2014,1,1)) temporal_bounds = IonObject(OT.TemporalBounds, name='planned', start_datetime=start.to_string(), end_datetime=end.to_string()) deployment_obj = IonObject(RT.Deployment, name='TestDeployment', description='some new deployment', constraint_list=[temporal_bounds]) deployment_id = self.omsclient.create_deployment(deployment_obj) self.omsclient.deploy_platform_site(site_id, deployment_id) self.imsclient.deploy_platform_device(device_id, deployment_id) log.debug("test_create_deployment: created deployment id: %s ", str(deployment_id) ) #retrieve the deployment objects and check that the assoc site and device are attached read_deployment_obj = self.omsclient.read_deployment(deployment_id) log.debug("test_create_deployment: created deployment obj: %s ", str(read_deployment_obj) ) site_ids, _ = self.rrclient.find_subjects(RT.PlatformSite, PRED.hasDeployment, deployment_id, True) self.assertEqual(len(site_ids), 1) device_ids, _ = self.rrclient.find_subjects(RT.PlatformDevice, PRED.hasDeployment, deployment_id, True) self.assertEqual(len(device_ids), 1) #delete the deployment self.resource_impl.pluck(deployment_id) self.omsclient.force_delete_deployment(deployment_id) # now try to get the deleted dp object try: deployment_obj = self.omsclient.read_deployment(deployment_id) except NotFound: pass else: self.fail("deleted deployment was found during read")
def test_time_ntp_fidelity(self): it1 = IonTime() ntp_ts = it1.to_ntp() it2 = IonTime() it2.from_ntp(ntp_ts) self.assertEquals(it1.seconds, it2.seconds) self.assertTrue(np.abs(it1.useconds - it2.useconds) <= 1)
def persist_file(self, file_data='', digest='', metadata=None): ds = self.container.datastore_manager.get_datastore( self.datastore_name, DS.DS_PROFILE.FILESYSTEM) validate_is_instance(file_data, basestring, "File or binary data must be a string.") validate_is_instance(metadata, File) if self.list_files(metadata.name + metadata.extension): raise BadRequest('%s already exists.' % metadata.name + metadata.extension) digest_ = sha224(file_data).hexdigest() if digest: validate_equal( digest, digest_, "The provided digest does not match the file's digest. Ensure you are using sha224." ) else: digest = digest_ extension = metadata.extension if '.' in metadata.name: t = metadata.name.split('.') metadata.name, metadata.extension = ('.'.join(t[:-1]), '.' + t[-1]) url = FileSystem.get_hierarchical_url(FS.CACHE, digest, extension) try: with open(url, 'w+b') as f: f.write(file_data) f.close() except Exception: log.exception('Failed to write %s', url) raise BadRequest('Could not successfully write file data') if metadata.name[0] != '/': metadata.name = '/' + metadata.name metadata.url = url metadata.digest = digest metadata.created_date = IonTime().to_string() metadata.modified_date = IonTime().to_string() metadata.size = len(file_data) doc_id, rev_id = ds.create(metadata) return doc_id
def create_basic_deployment(self, name='', description=''): start = IonTime(datetime.datetime(2013, 1, 1)) end = IonTime(datetime.datetime(2014, 1, 1)) temporal_bounds = IonObject(OT.TemporalBounds, name='planned', start_datetime=start.to_string(), end_datetime=end.to_string()) deployment_obj = IonObject(RT.Deployment, name=name, description=description, context=IonObject( OT.CabledNodeDeploymentContext), constraint_list=[temporal_bounds]) return self.OMS.create_deployment(deployment_obj)
def test_ntp_compatability(self): unix_day = IonTime(datetime.datetime(1970, 1, 1)) self.assertEquals(unix_day.era, 0) self.assertEquals(unix_day.seconds, 2208988800) utc_day = IonTime(datetime.datetime(1972, 1, 1)) self.assertEquals(utc_day.era, 0) self.assertEquals(utc_day.seconds, 2272060800) millen_day = IonTime(datetime.datetime(2000, 1, 1)) self.assertEquals(millen_day.era, 0) self.assertEquals(millen_day.seconds, 3155673600) ntp_era1 = IonTime(datetime.datetime(2036, 2, 8)) self.assertEquals(ntp_era1.era, 1) self.assertEquals(ntp_era1.seconds, 63104) self.assertEquals(ntp_era1.to_unix(), 2086041600.)
def base_activate_deployment(self): #------------------------------------------------------------------------------------- # Create platform site, platform device, platform model #------------------------------------------------------------------------------------- platform_site__obj = IonObject(RT.PlatformSite, name='PlatformSite1', description='test platform site') platform_site_id = self.omsclient.create_platform_site(platform_site__obj) platform_device_obj = IonObject(RT.PlatformDevice, name='PlatformDevice1', description='test platform device') platform_device_id = self.imsclient.create_platform_device(platform_device_obj) platform_model__obj = IonObject(RT.PlatformModel, name='PlatformModel1', description='test platform model') platform_model_id = self.imsclient.create_platform_model(platform_model__obj) #------------------------------------------------------------------------------------- # Create instrument site #------------------------------------------------------------------------------------- instrument_site_obj = IonObject(RT.InstrumentSite, name='InstrumentSite1', description='test instrument site') instrument_site_id = self.omsclient.create_instrument_site(instrument_site_obj, platform_site_id) pdict_id = self.dataset_management.read_parameter_dictionary_by_name('ctd_parsed_param_dict', id_only=True) ctd_stream_def_id = self.psmsclient.create_stream_definition(name='SBE37_CDM', parameter_dictionary_id=pdict_id) #---------------------------------------------------------------------------------------------------- # Create an instrument device #---------------------------------------------------------------------------------------------------- instrument_device_obj = IonObject(RT.InstrumentDevice, name='InstrumentDevice1', description='test instrument device') instrument_device_id = self.imsclient.create_instrument_device(instrument_device_obj) self.rrclient.create_association(platform_device_id, PRED.hasDevice, instrument_device_id) #---------------------------------------------------------------------------------------------------- # Create an instrument model #---------------------------------------------------------------------------------------------------- instrument_model_obj = IonObject(RT.InstrumentModel, name='InstrumentModel1', description='test instrument model') instrument_model_id = self.imsclient.create_instrument_model(instrument_model_obj) #---------------------------------------------------------------------------------------------------- # Create a deployment object #---------------------------------------------------------------------------------------------------- start = IonTime(datetime.datetime(2013,1,1)) end = IonTime(datetime.datetime(2014,1,1)) temporal_bounds = IonObject(OT.TemporalBounds, name='planned', start_datetime=start.to_string(), end_datetime=end.to_string()) deployment_obj = IonObject(RT.Deployment, name='TestDeployment', description='some new deployment', context=IonObject(OT.CabledNodeDeploymentContext), constraint_list=[temporal_bounds]) deployment_id = self.omsclient.create_deployment(deployment_obj) log.debug("test_create_deployment: created deployment id: %s ", str(deployment_id) ) ret = DotDict(instrument_site_id=instrument_site_id, instrument_device_id=instrument_device_id, instrument_model_id=instrument_model_id, platform_site_id=platform_site_id, platform_device_id=platform_device_id, platform_model_id=platform_model_id, deployment_id=deployment_id) return ret
def test_prepare_deployment_support(self): deploy_sup = self.omsclient.prepare_deployment_support() self.assertTrue(deploy_sup) self.assertEquals(deploy_sup.associations['DeploymentHasInstrumentDevice'].type_, "AssocDeploymentInstDevice") self.assertEquals(deploy_sup.associations['DeploymentHasInstrumentDevice'].resources, []) self.assertEquals(deploy_sup.associations['DeploymentHasInstrumentDevice'].associated_resources, []) self.assertEquals(deploy_sup.associations['DeploymentHasPlatformDevice'].type_, "AssocDeploymentPlatDevice") self.assertEquals(deploy_sup.associations['DeploymentHasPlatformDevice'].resources, []) self.assertEquals(deploy_sup.associations['DeploymentHasPlatformDevice'].associated_resources, []) self.assertEquals(deploy_sup.associations['DeploymentHasInstrumentSite'].type_, "AssocDeploymentInstSite") self.assertEquals(deploy_sup.associations['DeploymentHasInstrumentSite'].resources, []) self.assertEquals(deploy_sup.associations['DeploymentHasInstrumentSite'].associated_resources, []) self.assertEquals(deploy_sup.associations['DeploymentHasPlatformSite'].type_, "AssocDeploymentPlatSite") self.assertEquals(deploy_sup.associations['DeploymentHasPlatformSite'].resources, []) self.assertEquals(deploy_sup.associations['DeploymentHasPlatformSite'].associated_resources, []) #create a deployment with metadata and an initial site and device platform_site__obj = IonObject(RT.PlatformSite, name='PlatformSite1', description='test platform site') site_id = self.omsclient.create_platform_site(platform_site__obj) platform_device__obj = IonObject(RT.PlatformDevice, name='PlatformDevice1', description='test platform device') device_id = self.imsclient.create_platform_device(platform_device__obj) start = IonTime(datetime.datetime(2013,1,1)) end = IonTime(datetime.datetime(2014,1,1)) temporal_bounds = IonObject(OT.TemporalBounds, name='planned', start_datetime=start.to_string(), end_datetime=end.to_string()) deployment_obj = IonObject(RT.Deployment, name='TestDeployment', description='some new deployment', constraint_list=[temporal_bounds]) deployment_id = self.omsclient.create_deployment(deployment_obj) deploy_sup = self.omsclient.prepare_deployment_support(deployment_id) self.assertEquals(deploy_sup.associations['DeploymentHasInstrumentDevice'].resources, []) self.assertEquals(deploy_sup.associations['DeploymentHasInstrumentDevice'].associated_resources, []) self.assertEquals(len(deploy_sup.associations['DeploymentHasPlatformDevice'].resources), 1) self.assertEquals(deploy_sup.associations['DeploymentHasPlatformDevice'].associated_resources, []) self.assertEquals(deploy_sup.associations['DeploymentHasInstrumentSite'].resources, []) self.assertEquals(deploy_sup.associations['DeploymentHasInstrumentSite'].associated_resources, []) self.assertEquals(len(deploy_sup.associations['DeploymentHasPlatformSite'].resources), 1) self.assertEquals(deploy_sup.associations['DeploymentHasPlatformSite'].associated_resources, []) self.omsclient.assign_site_to_deployment(site_id, deployment_id) self.omsclient.assign_device_to_deployment(device_id, deployment_id) deploy_sup = self.omsclient.prepare_deployment_support(deployment_id) self.assertEquals(deploy_sup.associations['DeploymentHasInstrumentDevice'].resources, []) self.assertEquals(deploy_sup.associations['DeploymentHasInstrumentDevice'].associated_resources, []) self.assertEquals(len(deploy_sup.associations['DeploymentHasPlatformDevice'].resources), 1) self.assertEquals(len(deploy_sup.associations['DeploymentHasPlatformDevice'].associated_resources), 1) self.assertEquals(deploy_sup.associations['DeploymentHasInstrumentSite'].resources, []) self.assertEquals(deploy_sup.associations['DeploymentHasInstrumentSite'].associated_resources, []) self.assertEquals(len(deploy_sup.associations['DeploymentHasPlatformSite'].resources), 1) self.assertEquals(len(deploy_sup.associations['DeploymentHasPlatformSite'].associated_resources), 1) #delete the deployment self.RR2.pluck(deployment_id) self.omsclient.force_delete_deployment(deployment_id) # now try to get the deleted dp object try: self.omsclient.read_deployment(deployment_id) except NotFound: pass else: self.fail("deleted deployment was found during read")
def test_unix_time_fidelity(self): ts = time.time() it1 = IonTime(ts) ts_2 = it1.to_unix() self.assertTrue(np.abs(ts - ts_2) <= 1e-3)
def convert_timestamp_to_human_readable(timestamp=''): it = IonTime(int(timestamp) / 1000.) return str(it)
def test_time_ntp_fidelity(self): it1 = IonTime() ntp_ts = it1.to_ntp64() it2 = IonTime.from_ntp64(ntp_ts) self.assertEquals(it1.seconds,it2.seconds) self.assertTrue(np.abs(it1.useconds - it2.useconds) <= 1)
def _convert_to_human_readable(t=''): it = IonTime(int(t) / 1000.) return str(it)
def test_activate_deployment(self): #------------------------------------------------------------------------------------- # Create platform site, platform device, platform model #------------------------------------------------------------------------------------- platform_site__obj = IonObject(RT.PlatformSite, name='PlatformSite1', description='test platform site') site_id = self.omsclient.create_platform_site(platform_site__obj) platform_device_obj = IonObject(RT.PlatformDevice, name='PlatformDevice1', description='test platform device') platform_device_id = self.imsclient.create_platform_device(platform_device_obj) platform_model__obj = IonObject(RT.PlatformModel, name='PlatformModel1', description='test platform model') model_id = self.imsclient.create_platform_model(platform_model__obj) #------------------------------------------------------------------------------------- # Assign platform model to platform device and site #------------------------------------------------------------------------------------- self.imsclient.assign_platform_model_to_platform_device(model_id, platform_device_id) self.omsclient.assign_platform_model_to_platform_site(model_id, site_id) #------------------------------------------------------------------------------------- # Create instrument site #------------------------------------------------------------------------------------- instrument_site_obj = IonObject(RT.InstrumentSite, name='InstrumentSite1', description='test instrument site') instrument_site_id = self.omsclient.create_instrument_site(instrument_site_obj, site_id) pdict_id = self.dataset_management.read_parameter_dictionary_by_name('ctd_parsed_param_dict', id_only=True) ctd_stream_def_id = self.psmsclient.create_stream_definition(name='SBE37_CDM', parameter_dictionary_id=pdict_id) # Construct temporal and spatial Coordinate Reference System objects tdom, sdom = time_series_domain() sdom = sdom.dump() tdom = tdom.dump() dp_obj = IonObject(RT.DataProduct, name='Log Data Product', description='some new dp', temporal_domain = tdom, spatial_domain = sdom) out_log_data_product_id = self.dmpsclient.create_data_product(dp_obj, ctd_stream_def_id) #---------------------------------------------------------------------------------------------------- # Start the transform (a logical transform) that acts as an instrument site #---------------------------------------------------------------------------------------------------- self.omsclient.create_site_data_product( site_id= instrument_site_id, data_product_id = out_log_data_product_id) #---------------------------------------------------------------------------------------------------- # Create an instrument device #---------------------------------------------------------------------------------------------------- instrument_device_obj = IonObject(RT.InstrumentDevice, name='InstrumentDevice1', description='test instrument device') instrument_device_id = self.imsclient.create_instrument_device(instrument_device_obj) self.rrclient.create_association(platform_device_id, PRED.hasDevice, instrument_device_id) dp_obj = IonObject(RT.DataProduct, name='Instrument Data Product', description='some new dp', temporal_domain = tdom, spatial_domain = sdom) inst_data_product_id = self.dmpsclient.create_data_product(dp_obj, ctd_stream_def_id) #assign data products appropriately self.damsclient.assign_data_product(input_resource_id=instrument_device_id, data_product_id=inst_data_product_id) #---------------------------------------------------------------------------------------------------- # Create an instrument model #---------------------------------------------------------------------------------------------------- instrument_model_obj = IonObject(RT.InstrumentModel, name='InstrumentModel1', description='test instrument model') instrument_model_id = self.imsclient.create_instrument_model(instrument_model_obj) self.imsclient.assign_instrument_model_to_instrument_device(instrument_model_id, instrument_device_id) self.omsclient.assign_instrument_model_to_instrument_site(instrument_model_id, instrument_site_id) #---------------------------------------------------------------------------------------------------- # Create a deployment object #---------------------------------------------------------------------------------------------------- start = IonTime(datetime.datetime(2013,1,1)) end = IonTime(datetime.datetime(2014,1,1)) temporal_bounds = IonObject(OT.TemporalBounds, name='planned', start_datetime=start.to_string(), end_datetime=end.to_string()) deployment_obj = IonObject(RT.Deployment, name='TestDeployment', description='some new deployment', constraint_list=[temporal_bounds]) deployment_id = self.omsclient.create_deployment(deployment_obj) self.omsclient.deploy_instrument_site(instrument_site_id, deployment_id) self.imsclient.deploy_instrument_device(instrument_device_id, deployment_id) log.debug("test_create_deployment: created deployment id: %s ", str(deployment_id) ) self.omsclient.activate_deployment(deployment_id)
def base_activate_deployment(self): #------------------------------------------------------------------------------------- # Create platform site, platform device, platform model #------------------------------------------------------------------------------------- platform_site__obj = IonObject(RT.PlatformSite, name='PlatformSite1', description='test platform site') platform_site_id = self.omsclient.create_platform_site( platform_site__obj) platform_device_obj = IonObject(RT.PlatformDevice, name='PlatformDevice1', description='test platform device') platform_device_id = self.imsclient.create_platform_device( platform_device_obj) platform_model__obj = IonObject(RT.PlatformModel, name='PlatformModel1', description='test platform model') platform_model_id = self.imsclient.create_platform_model( platform_model__obj) #------------------------------------------------------------------------------------- # Create instrument site #------------------------------------------------------------------------------------- instrument_site_obj = IonObject(RT.InstrumentSite, name='InstrumentSite1', description='test instrument site') instrument_site_id = self.omsclient.create_instrument_site( instrument_site_obj, platform_site_id) pdict_id = self.dataset_management.read_parameter_dictionary_by_name( 'ctd_parsed_param_dict', id_only=True) ctd_stream_def_id = self.psmsclient.create_stream_definition( name='SBE37_CDM', parameter_dictionary_id=pdict_id) # Construct temporal and spatial Coordinate Reference System objects tdom, sdom = time_series_domain() sdom = sdom.dump() tdom = tdom.dump() dp_obj = IonObject(RT.DataProduct, name='Log Data Product', description='some new dp', temporal_domain=tdom, spatial_domain=sdom) out_log_data_product_id = self.dmpsclient.create_data_product( dp_obj, ctd_stream_def_id) #---------------------------------------------------------------------------------------------------- # Start the transform (a logical transform) that acts as an instrument site #---------------------------------------------------------------------------------------------------- self.omsclient.create_site_data_product( site_id=instrument_site_id, data_product_id=out_log_data_product_id) #---------------------------------------------------------------------------------------------------- # Create an instrument device #---------------------------------------------------------------------------------------------------- instrument_device_obj = IonObject(RT.InstrumentDevice, name='InstrumentDevice1', description='test instrument device') instrument_device_id = self.imsclient.create_instrument_device( instrument_device_obj) self.rrclient.create_association(platform_device_id, PRED.hasDevice, instrument_device_id) dp_obj = IonObject(RT.DataProduct, name='Instrument Data Product', description='some new dp', temporal_domain=tdom, spatial_domain=sdom) inst_data_product_id = self.dmpsclient.create_data_product( dp_obj, ctd_stream_def_id) #assign data products appropriately self.damsclient.assign_data_product( input_resource_id=instrument_device_id, data_product_id=inst_data_product_id) #---------------------------------------------------------------------------------------------------- # Create an instrument model #---------------------------------------------------------------------------------------------------- instrument_model_obj = IonObject(RT.InstrumentModel, name='InstrumentModel1', description='test instrument model') instrument_model_id = self.imsclient.create_instrument_model( instrument_model_obj) #---------------------------------------------------------------------------------------------------- # Create a deployment object #---------------------------------------------------------------------------------------------------- start = IonTime(datetime.datetime(2013, 1, 1)) end = IonTime(datetime.datetime(2014, 1, 1)) temporal_bounds = IonObject(OT.TemporalBounds, name='planned', start_datetime=start.to_string(), end_datetime=end.to_string()) deployment_obj = IonObject(RT.Deployment, name='TestDeployment', description='some new deployment', constraint_list=[temporal_bounds]) deployment_id = self.omsclient.create_deployment(deployment_obj) log.debug("test_create_deployment: created deployment id: %s ", str(deployment_id)) ret = DotDict(instrument_site_id=instrument_site_id, instrument_device_id=instrument_device_id, instrument_model_id=instrument_model_id, platform_site_id=platform_site_id, platform_device_id=platform_device_id, platform_model_id=platform_model_id, deployment_id=deployment_id) return ret
def _format_ion_time(self, ion_time=''): ion_time_obj = IonTime.from_string(ion_time) #todo: fix this and return str( ion_time_obj) return str(ion_time_obj)