"par":
input_formats.MysqlMapping("hgnc_names", "u", "gsy", "mapping", None)
}
#,
#{
#"one": "uniprot",
#"two": "hgnc",
#"typ": "protein",
#"src": "mysql",
#"par": input_formats.UniprotMapping("hgnc_names","u","gsy","mapping",None)
#}
]
mapListUniprot = {
('embl', 'uniprot'):
input_formats.UniprotMapping('embl'),
('genesymbol', 'uniprot'):
input_formats.UniprotMapping('genesymbol', bi=True),
('genesymbol-syn', 'uniprot'):
input_formats.UniprotMapping('genesymbol-syn'),
('entrez', 'uniprot'):
input_formats.UniprotMapping('entrez'),
('hgnc', 'uniprot'):
input_formats.UniprotMapping('hgnc'),
('enst', 'uniprot'):
input_formats.UniprotMapping('enst'),
('refseqp', 'uniprot'):
input_formats.UniprotMapping('refseqp'),
('uniprot-entry', 'uniprot'):
input_formats.UniprotMapping('uniprot-entry'),
('protein-name', 'uniprot'):
id_type_a = 'entrez',
id_type_b = 'uniprot',
entity_type = 'protein',
input_ = os.path.join(common.ROOT, 'data', 'entrez_uniprot.csv'),
col_a = 1,
col_b = 0,
separator = ';',
header = 0,
),
}
uniprot = {
('embl', 'uniprot'):
input_formats.UniprotMapping(
id_type_a = 'embl',
),
('genesymbol', 'uniprot'):
input_formats.UniprotMapping(
id_type_a = 'genesymbol',
),
('genesymbol-syn', 'uniprot'):
input_formats.UniprotMapping(
id_type_a = 'genesymbol-syn'
),
('entrez', 'uniprot'):
input_formats.UniprotMapping(
id_type_a = 'entrez',
),
('hgnc', 'uniprot'):
input_formats.UniprotMapping(