Пример #1
0
    def test_make_slices_default_with_params_set(self):
        """Test slicing function with window_size set"""

        for count, i in enumerate(VCF.get_slice_indicies(self.bgzip_path, regions=None, window_size=1008)):
            if count > 10:
                break

        self.assertEqual(i, ('Chr01', 11089, 12096))
Пример #2
0
    def test_make_slices_default_settings(self):
        """Test slicing function with default settings: 500 bp slices"""

        for count, i in enumerate(VCF.get_slice_indicies(self.bgzip_path, regions=None, window_size=500)):
            if count > 10:
                break

        self.assertEqual(i, ('Chr01', 5501, 6000))