StyleDefinition, ClassMatchDefinition
# Manager objects
logging.debug('Setting up managers...')
styles = StylesManager()
notebook_queue = RunManager()
settings = QSettingsManager()
settings.set_defaults({
'Pathomx/Is_setup': False,
'Pathomx/Current_version': '0.0.1',
'Pathomx/Update/Latest_version': '0.0.1',
'Pathomx/Update/Last_checked': None,
'Pathomx/Offered_registration': False,
'Plugins/Paths': [],
'Plugins/Disabled': [],
'Resources/MATLAB_path': 'matlab',
'Editor/Snap_to_grid': False,
'Editor/Show_grid': True,
})
mono_fontFamilies = {'Windows':'Courier New',
'Darwin': 'Menlo'}
mono_fontFamily = mono_fontFamilies.get(platform.system(), 'Monospace')
# Set Matplotlib defaults for nice looking charts
mpl.rcParams['figure.facecolor'] = 'white'
'active': 'orange',
'error': 'red',
'inactive': 'white',
'complete': 'green'
}
# ReadTheDocs
ON_RTD = os.environ.get('READTHEDOCS', None) == 'True'
if not ON_RTD:
# Application settings
settings = QSettingsManager()
settings.set_defaults({
'core/is_setup': False,
'core/current_version': '0.0.1',
'core/latest_version': '0.0.1',
'core/last_time_version_checked': 0,
'core/offered_registration': False,
})
# GLobal processing settings (e.g. peak annotations, class groups, etc.)
config = ConfigManager()
config.set_defaults({
'annotation/peaks': [], # [(label, peak, tolerance)
'annotation/sample_classes': {}, # {'sample_id': 'class_name' }
'annotation/class_colors': {}, # {'class_name': color }
})
STATUS_QCOLORS = {
'ready': QColor(255, 255, 255),
# Manager objects
logging.debug('Setting up managers...')
styles = StylesManager()
notebook_queue = RunManager()
settings = QSettingsManager()
settings.set_defaults({
'Pathomx/Is_setup': False,
'Pathomx/Current_version': '0.0.1',
'Pathomx/Update/Latest_version': '0.0.1',
'Pathomx/Update/Last_checked': 0,
'Pathomx/Offered_registration': False,
'Plugins/Paths': [os.path.join(os.path.expanduser("~"), 'PathomxPlugins')],
'Plugins/Disabled': [],
'Resources/MATLAB_path': 'matlab',
'Editor/Snap_to_grid': False,
'Editor/Show_grid': True,
'Editor/Auto_position': False,
})
mono_fontFamilies = {'Windows': 'Courier New',
'Darwin': 'Menlo'}
mono_fontFamily = mono_fontFamilies.get(platform.system(), 'Monospace')
# Set Matplotlib defaults for nice looking charts
mpl.rcParams['figure.facecolor'] = 'white'
# Manager objects
logging.debug('Setting up managers...')
styles = StylesManager()
notebook_queue = NotebookRunnerQueue()
# Pathomx global variables
current_tools = []
current_tools_by_id = {}
installed_plugin_names = {}
current_datasets = []
app_launchers = {}
file_handlers = {}
url_handlers = defaultdict(list)
logging.debug('Loading settings...')
settings = QSettingsManager()
settings.set_defaults({
'Pathomx/Is_setup': False,
'Pathomx/Current_version': '0.0.1',
'Pathomx/Update/Latest_version': '0.0.1',
'Pathomx/Update/Last_checked': None,
'Pathomx/Offered_registration': False,
'Plugins/Active': [],
'Plugins/Disabled': [],
'Plugins/Available': [],
'Plugins/Paths': [],
'Resources/MATLAB_path': 'matlab',
'Editor/Snap_to_grid': False,
'Editor/Show_grid': True,
})
# Manager objects
logging.debug('Setting up managers...')
styles = StylesManager()
notebook_queue = RunManager()
settings = QSettingsManager()
settings.set_defaults({
'Pathomx/Is_setup': False,
'Pathomx/Current_version': '0.0.1',
'Pathomx/Update/Latest_version': '0.0.1',
'Pathomx/Update/Last_checked': 0,
'Pathomx/Offered_registration': False,
'Plugins/Paths': [os.path.join(os.path.expanduser("~"), 'PathomxPlugins')],
'Plugins/Disabled': [],
'Resources/MATLAB_path': 'matlab',
'Editor/Snap_to_grid': False,
'Editor/Show_grid': True,
'Editor/Auto_position': False,
})
mono_fontFamilies = {'Windows': 'Courier New',
'Darwin': 'Menlo'}
mono_fontFamily = mono_fontFamilies.get(platform.system(), 'Monospace')
# Set Matplotlib defaults for nice looking charts
mpl.rcParams['figure.facecolor'] = 'white'