def _run(self, protocol, request):
if not protocol.useSplitVolume:
emptyInput = protocol.inputVolume.pointsNone()
else:
emptyInput = (protocol.volumeHalf1.pointsNone()
or protocol.volumeHalf2.pointsNone())
if emptyInput:
return HttpResponse("Error: select the input volume(s) first.")
else:
plotUrl, min_ang = getPlotResMap(request, protocol)
ang = protocol.prewhitenAng.get()
if ang < min_ang:
ang = min_ang
context = {
# Params
'ang': round(ang, 2),
'ramp': protocol.prewhitenRamp.get(),
# Extra Params
'pValue': protocol.pVal.get(),
'minRes': protocol.minRes.get(),
'maxRes': protocol.maxRes.get(),
'stepRes': protocol.stepRes.get(),
# Others
'plot': plotUrl,
'min_ang': round(min_ang, 2),
'messi_js': getResourceJs('messi'),
'messi_css': getResourceCss('messi'),
}
if protocol.useSplitVolume:
context.update({
'useSplit': 1,
'inputId': protocol.volumeHalf1.getUniqueId(),
'splitId': protocol.volumeHalf2.getUniqueId()
})
else:
context.update({'inputId': protocol.inputVolume.getUniqueId()})
if protocol.applyMask:
if protocol.maskVolume.pointsNone():
return HttpResponse("Error: select the input mask first.")
context.update({
'useMask': 1,
'maskId': protocol.maskVolume.getUniqueId()
})
context = base_wiz(request, context)
return render_to_response('wizards/wiz_resmap.html', context)
def service_movies(request):
if 'projectName' in request.session: request.session['projectName'] = ""
if 'projectPath' in request.session: request.session['projectPath'] = ""
movies_utils = join(django_settings.STATIC_URL, "js/", "movies_utils.js")
context = {'projects_css': getResourceCss('projects'),
'project_utils_js': getResourceJs('project_utils'),
'scipion_mail': getResourceIcon('scipion_mail'),
'movies_utils': movies_utils,
}
context = base_grid(request, context)
return render_to_response('movies_projects.html', context)
def service_movies(request):
if 'projectName' in request.session: request.session['projectName'] = ""
if 'projectPath' in request.session: request.session['projectPath'] = ""
movies_utils = join(django_settings.STATIC_URL, "js/", "movies_utils.js")
context = {
'projects_css': getResourceCss('projects'),
'project_utils_js': getResourceJs('project_utils'),
'scipion_mail': getResourceIcon('scipion_mail'),
'movies_utils': movies_utils,
}
context = base_grid(request, context)
return render_to_response('movies_projects.html', context)
def resmap_projects(request):
if 'projectName' in request.session: request.session['projectName'] = ""
if 'projectPath' in request.session: request.session['projectPath'] = ""
myresmap_utils = join(django_settings.STATIC_URL, "js/", "myresmap_utils.js")
context = {'projects_css': getResourceCss('projects'),
'project_utils_js': getResourceJs('project_utils'),
'scipion_mail': getResourceIcon('scipion_mail'),
'myresmap_utils': myresmap_utils,
'hiddenTreeProt': True,
}
context = base_grid(request, context)
return render_to_response('resmap_projects.html', context)
def resmap_projects(request):
if 'projectName' in request.session: request.session['projectName'] = ""
if 'projectPath' in request.session: request.session['projectPath'] = ""
myresmap_utils = join(django_settings.STATIC_URL, "js/", "myresmap_utils.js")
context = {'projects_css': getResourceCss('projects'),
'project_utils_js': getResourceJs('project_utils'),
'scipion_mail': getResourceIcon('scipion_mail'),
'myresmap_utils': myresmap_utils,
'hiddenTreeProt': True,
}
context = base_grid(request, context)
return render_to_response('resmap_projects.html', context)
def create_context_chimera(volPath, threshold=None):
# Control the threshold value
if threshold == None:
threshold = 0.1
else:
threshold = round(threshold, 3)
chimeraHtml = chimera_headless(volPath, threshold)
context = {"chimeraHtml": chimeraHtml,
"volPath": volPath,
"threshold": threshold,
"jquery_ui_css": getResourceCss("jquery_ui"),
"philogl": getResourceJs("philogl"),
}
return context
def create_context_chimera(volPath, threshold=None):
# Control the threshold value
if threshold == None:
threshold = 0.1
else:
threshold = round(threshold, 3)
chimeraHtml = chimera_headless(volPath, threshold)
context = {"chimeraHtml": chimeraHtml,
"volPath": volPath,
"threshold": threshold,
"jquery_ui_css": getResourceCss("jquery_ui"),
"philogl": getResourceJs("philogl"),
}
return context
def service_movies(request):
if CTX_PROJECT_NAME in request.session:
request.session[CTX_PROJECT_NAME] = ""
if CTX_PROJECT_PATH in request.session:
request.session[CTX_PROJECT_PATH] = ""
movies_utils = getResource("js/movies_utils.js")
context = {
'projects_css': getResourceCss('projects'),
'project_utils_js': getResourceJs('project_utils'),
'scipion_mail': getResourceIcon('scipion_mail'),
'movies_utils': movies_utils,
}
context = base_grid(request, context)
return render_to_response('movies_projects.html', context)
def service_projects(request):
if CTX_PROJECT_NAME in request.session: request.session[CTX_PROJECT_NAME] = ""
if CTX_PROJECT_PATH in request.session: request.session[CTX_PROJECT_PATH] = ""
myfirstmap_utils = getResource("js/myfirstmap_utils.js")
context = {'projects_css': getResourceCss('projects'),
'project_utils_js': getResourceJs('project_utils'),
'scipion_mail': getResourceIcon('scipion_mail'),
'myfirstmap_utils': myfirstmap_utils,
'hiddenTreeProt': True,
SERVICE_NAME: MYFIRSTMAP_SERVICE
}
context = base_grid(request, context)
return render_to_response('service_projects.html', context)
def particleValidation_projects(request):
if CTX_PROJECT_NAME in request.session:
request.session[CTX_PROJECT_NAME] = ""
if CTX_PROJECT_PATH in request.session:
request.session[CTX_PROJECT_PATH] = ""
mypval_utils = getResource("js/mypval_utils.js")
context = {
'projects_css': getResourceCss('projects'),
'project_utils_js': getResourceJs('project_utils'),
'scipion_mail': getResourceIcon('scipion_mail'),
'mypval_utils': mypval_utils,
'hiddenTreeProt': True,
}
context = base_grid(request, context)
return render_to_response('pval_projects.html', context)
def create_context_volume(request, inputParams, volPath, param_stats):
import os
context = None
if inputParams[sj.MODE] == sj.MODE_VOL_NGL:
# We need to convert the map to a valid NGL density format (mrc)
volPath = volumeToNGL(volPath)
context = {"ngl": getResourceJs('ngl'),
"volPath": volPath,
"threshold": 1.5,
'minSigma': 0,
'maxSigma': 4,
"jquery_ui_css": getResourceCss("jquery_ui")
}
return context
def _run(self, protocol, request):
if not protocol.inputVolume.get().hasValue():
return HttpResponse("errorInput")
elif protocol.useSplitVolume == True:
if not protocol.splitVolume.get().hasValue():
return HttpResponse("errorInput")
else:
plotUrl, min_ang = getPlotResMap(request, protocol)
ang = protocol.prewhitenAng.get()
if ang < min_ang:
ang = min_ang
context = {
# Params
'inputId': protocol.inputVolume.get().getObjId(),
'ang': round(ang, 2),
'ramp': protocol.prewhitenRamp.get(),
# Extra Params
'pValue': protocol.pVal.get(),
'minRes': protocol.minRes.get(),
'maxRes': protocol.maxRes.get(),
'stepRes': protocol.stepRes.get(),
# Others
'plot': plotUrl,
'min_ang': round(min_ang, 2),
'messi_js': getResourceJs('messi'),
'messi_css': getResourceCss('messi'),
}
if protocol.useSplitVolume == True and protocol.splitVolume.get().hasValue():
context.update({'useSplit' : 1,
'splitId' : protocol.splitVolume.getObjId(),
})
if protocol.applyMask == True and protocol.maskVolume.get().hasValue():
context.update({'useMask' : 1,
'maskId' : protocol.maskVolume.getObjId(),
})
context = base_wiz(request, context)
return render_to_response('wizards/wiz_resmap.html', context)
def _run(self, protocol, request):
if not protocol.inputVolume.get().hasValue():
return HttpResponse("errorInput")
elif protocol.useSplitVolume == True:
if not protocol.splitVolume.get().hasValue():
return HttpResponse("errorInput")
else:
plotUrl, min_ang = getPlotResMap(request, protocol)
ang = protocol.prewhitenAng.get()
if ang < min_ang:
ang = min_ang
context = {
# Params
'inputId': protocol.inputVolume.get().getObjId(),
'ang': round(ang, 2),
'ramp': protocol.prewhitenRamp.get(),
# Extra Params
'pValue': protocol.pVal.get(),
'minRes': protocol.minRes.get(),
'maxRes': protocol.maxRes.get(),
'stepRes': protocol.stepRes.get(),
# Others
'plot': plotUrl,
'min_ang': round(min_ang, 2),
'messi_js': getResourceJs('messi'),
'messi_css': getResourceCss('messi'),
}
if protocol.useSplitVolume == True and protocol.splitVolume.get().hasValue():
context.update({'useSplit' : 1,
'splitId' : protocol.splitVolume.getObjId(),
})
if protocol.applyMask == True and protocol.maskVolume.get().hasValue():
context.update({'useMask' : 1,
'maskId' : protocol.maskVolume.getObjId(),
})
context = base_wiz(request, context)
return render_to_response('wizards/wiz_resmap.html', context)