def test_get_overlapping_no_overlap(self):
t1 = Table(np.array([[0, 1, 3], [1, 1, 2]]),
['O1', 'O2'], ['S1', 'S2', 'S3'])
t2 = Table(np.array([[0, 2, 6], [2, 2, 4]]),
['O3', 'O4'], ['S4', 'S5', 'S6'])
# samples
obs = _get_overlapping([t1, t2], 'sample')
self.assertEqual(set(), obs)
# features
obs = _get_overlapping([t1, t2], 'observation')
self.assertEqual(set(), obs)
def test_get_overlapping_no_overlap(self):
t1 = Table(np.array([[0, 1, 3], [1, 1, 2]]), ['O1', 'O2'],
['S1', 'S2', 'S3'])
t2 = Table(np.array([[0, 2, 6], [2, 2, 4]]), ['O3', 'O4'],
['S4', 'S5', 'S6'])
# samples
obs = _get_overlapping([t1, t2], 'sample')
self.assertEqual(set(), obs)
# features
obs = _get_overlapping([t1, t2], 'observation')
self.assertEqual(set(), obs)
def test_get_overlapping_multiple(self):
t1 = Table(np.array([[0, 1, 3], [1, 1, 2]]),
['O1', 'O2'], ['S1', 'S2', 'S3'])
t2 = Table(np.array([[0, 2, 6], [2, 2, 4]]),
['O1', 'O3'], ['S1', 'S5', 'S6'])
t3 = Table(np.array([[3, 3, 1], [0, 2, 1]]),
['O1', 'O2'], ['S1', 'S3', 'S6'])
# samples
obs = _get_overlapping([t1, t2, t3], 'sample')
self.assertEqual({'S1', 'S3', 'S6'}, obs)
# features
obs = _get_overlapping([t1, t2, t3], 'observation')
self.assertEqual({'O1', 'O2'}, obs)
def test_get_overlapping_multiple(self):
t1 = Table(np.array([[0, 1, 3], [1, 1, 2]]), ['O1', 'O2'],
['S1', 'S2', 'S3'])
t2 = Table(np.array([[0, 2, 6], [2, 2, 4]]), ['O1', 'O3'],
['S1', 'S5', 'S6'])
t3 = Table(np.array([[3, 3, 1], [0, 2, 1]]), ['O1', 'O2'],
['S1', 'S3', 'S6'])
# samples
obs = _get_overlapping([t1, t2, t3], 'sample')
self.assertEqual({'S1', 'S3', 'S6'}, obs)
# features
obs = _get_overlapping([t1, t2, t3], 'observation')
self.assertEqual({'O1', 'O2'}, obs)