def main():
option_parser, opts, args = parse_command_line_parameters(**script_info)
centroid_seqs = [MinimalFastaParser(open(e, "U")) for e in opts.centroid_fps.split(",")]
singleton_seqs = [MinimalFastaParser(open(e, "U")) for e in opts.singleton_fps.split(",")]
fasta_seqs = [MinimalFastaParser(open(e, "U")) for e in opts.fasta_fps.split(",")]
denoiser_map_fs = [open(e, "U") for e in opts.denoiser_map_fps.split(",")]
output_fasta_fp = opts.output_fasta_fp
output_f = open(opts.output_fasta_fp, "w")
for s in inflate_denoiser_output(
chain.from_iterable(centroid_seqs),
chain.from_iterable(singleton_seqs),
chain.from_iterable(denoiser_map_fs),
chain.from_iterable(fasta_seqs),
):
output_f.write(">%s\n%s\n" % s)
output_f.close()
def main():
option_parser, opts, args =\
parse_command_line_parameters(**script_info)
centroid_seqs = \
[parse_fasta(open(e, 'U')) for e in opts.centroid_fps]
singleton_seqs = \
[parse_fasta(open(e, 'U')) for e in opts.singleton_fps]
fasta_seqs = \
[parse_fasta(open(e, 'U')) for e in opts.fasta_fps]
denoiser_map_fs = \
[open(e, 'U') for e in opts.denoiser_map_fps]
output_fasta_fp = opts.output_fasta_fp
output_f = open(opts.output_fasta_fp, 'w')
for s in inflate_denoiser_output(chain.from_iterable(centroid_seqs),
chain.from_iterable(singleton_seqs),
chain.from_iterable(denoiser_map_fs),
chain.from_iterable(fasta_seqs)):
output_f.write('>%s\n%s\n' % s)
output_f.close()
def main():
option_parser, opts, args =\
parse_command_line_parameters(**script_info)
centroid_seqs = \
[parse_fasta(open(e, 'U')) for e in opts.centroid_fps]
singleton_seqs = \
[parse_fasta(open(e, 'U')) for e in opts.singleton_fps]
fasta_seqs = \
[parse_fasta(open(e, 'U')) for e in opts.fasta_fps]
denoiser_map_fs = \
[open(e, 'U') for e in opts.denoiser_map_fps]
output_fasta_fp = opts.output_fasta_fp
output_f = open(opts.output_fasta_fp, 'w')
for s in inflate_denoiser_output(
chain.from_iterable(centroid_seqs),
chain.from_iterable(singleton_seqs),
chain.from_iterable(denoiser_map_fs),
chain.from_iterable(fasta_seqs)):
output_f.write('>%s\n%s\n' % s)
output_f.close()