def test_get_job1(self):
"""
Test that a job can be retrieved from qstat_stdout
"""
x = Job(id='2495634', debug=True)
expected = self.got_job_out
got_job = x.get_job(id=x.id, qstat_stdout=self.qstat_stdout_r_Eqw_str)
self.assertTrue(got_job == expected)
def test_job_Eqw(self):
"""
Make sure an Eqw job can be identified
"""
x = Job(id='2493898', debug=True)
x._debug_update(qstat_stdout=self.qstat_stdout_r_Eqw_str)
status = x.status
expected = 'Eqw'
self.assertTrue(status == expected)
def test_job_Eqw_not_running(self):
"""
Make sure an Eqw job is labeled as not running
"""
x = Job(id='2493898', debug=True)
x._debug_update(qstat_stdout=self.qstat_stdout_r_Eqw_str)
status = x.status
expected = 'Eqw'
self.assertFalse(x.is_running)
def test_validate_qacct_normal_wrongusername(self):
"""
Test that a job can be validated from qacct stdout
"""
job = Job(id='3956736', debug=True)
with open(self.qacct_normal_file) as f:
qacct_stdout = f.read()
job.qacct_stdout = qacct_stdout
validation = job.validate_completion(username='******', days_limit=None)
self.assertFalse(validation)
def test_validate_qacct_killed1(self):
"""
Test that a job that was killed due to errors does not pass validation
"""
job = Job(id='3949361', debug=True)
with open(self.qacct_killed_file) as f:
qacct_stdout = f.read()
job.qacct_stdout = qacct_stdout
validation = job.validate_completion(username='******',
days_limit=None)
self.assertFalse(validation)
def test_running_job1(self):
"""
Find running job
id = '2495634'
self.qstat_stdout_r_Eqw_file
qstat_stdout_r_Eqw_file = "fixtures/qstat_stdout_r_Eqw.txt"
with open(qstat_stdout_r_Eqw_file, "rb") as f: qstat_stdout_r_Eqw_str = f.read()
from qsub import Job
x = Job(id = '2495634', debug = True)
"""
x = Job(id='2495634', debug=True)
x._debug_update(qstat_stdout=self.qstat_stdout_r_Eqw_str)
self.assertTrue(x.is_running)
def setUp(self):
self.scriptdir = os.path.dirname(os.path.realpath(__file__))
self.fixture_dir = os.path.join(self.scriptdir, "fixtures")
self.qstat_stdout_all_Eqw_file = os.path.join(
self.fixture_dir, "qstat_stdout_all_Eqw.txt")
self.qstat_stdout_Eqw_qw_file = os.path.join(
self.fixture_dir, "qstat_stdout_Eqw_qw.txt")
self.qstat_stdout_r_Eqw_file = os.path.join(self.fixture_dir,
"qstat_stdout_r_Eqw.txt")
self.got_job_file = os.path.join(self.fixture_dir, "got_job.txt")
self.sns_qsub_stdout_file = os.path.join(self.fixture_dir,
"sns_qsub_stdout.txt")
self.qacct_normal_file = os.path.join(self.fixture_dir,
"qacct_normal.txt")
# self.qacct_died_file = os.path.join(self.fixture_dir, "qacct_died.txt")
self.qacct_killed_file = os.path.join(self.fixture_dir,
"qacct_killed.txt")
with open(self.qstat_stdout_all_Eqw_file, "rb") as f:
self.qstat_stdout_all_Eqw_str = f.read()
# print(self.qstat_stdout_all_Eqw_str)
with open(self.qstat_stdout_Eqw_qw_file, "rb") as f:
self.qstat_stdout_Eqw_qw_str = f.read()
# print(self.qstat_stdout_Eqw_qw_str)
with open(self.qstat_stdout_r_Eqw_file, "rb") as f:
self.qstat_stdout_r_Eqw_str = f.read()
# print(self.qstat_stdout_r_Eqw_str)
with open(self.got_job_file, "rb") as f:
self.got_job_str = f.read()
self.got_job_out = [self.got_job_str]
# print(self.got_job_out)
self.debug_job = Job(id='', debug=True)