def __init__(self, parent=None):
super(ImportPage, self).__init__(parent=None)
main_v_box = QVBoxLayout()
label_font = QFont()
sys_font_point_size = label_font.pointSize()
label_font.setPointSize(sys_font_point_size + 2)
step_label = QLabel(str("Import"))
step_label.setFont(label_font)
self.simple_lin = QLineEdit(self)
self.simple_lin.textChanged.connect(self.update_command)
self.x_spn_bx = QSpinBox()
self.x_spn_bx.setMaximum(99999)
self.x_spn_bx.setSpecialValueText(" ")
self.y_spn_bx = QSpinBox()
self.y_spn_bx.setMaximum(99999)
self.y_spn_bx.setSpecialValueText(" ")
self.x_spn_bx.valueChanged.connect(self.x_beam_changed)
self.y_spn_bx.valueChanged.connect(self.y_beam_changed)
self.chk_invert = QCheckBox("Invert rotation axis")
self.chk_invert.stateChanged.connect(self.inv_rota_changed)
self.opn_fil_btn = QPushButton(" \n Select file(s) \n ")
main_path = get_main_path()
self.opn_fil_btn.setIcon(QIcon(main_path + "/resources/import.png"))
self.opn_fil_btn.setIconSize(QSize(80, 48))
main_v_box.addWidget(step_label)
main_v_box.addWidget(self.opn_fil_btn)
main_v_box.addWidget(self.simple_lin)
self.b_cetre_label = QLabel("\n\n Beam centre")
main_v_box.addWidget(self.b_cetre_label)
cent_hbox = QHBoxLayout()
self.x_label = QLabel(" X: ")
cent_hbox.addWidget(self.x_label)
cent_hbox.addWidget(self.x_spn_bx)
self.y_label = QLabel(" Y: ")
cent_hbox.addWidget(self.y_label)
cent_hbox.addWidget(self.y_spn_bx)
# cent_hbox.addWidget(QLabel(" \n "))
cent_hbox.addStretch()
main_v_box.addLayout(cent_hbox)
main_v_box.addWidget(self.chk_invert)
main_v_box.addStretch()
self.opn_fil_btn.clicked.connect(self.open_files)
self.defa_dir = str(os.getcwd())
self.setLayout(main_v_box)
# self.show()
self.reset_par()
def __init__(self, parent=None):
super(IntegrateSimplerParamTab, self).__init__()
# self.param_widget_parent = parent.param_widget_parent
localLayout = QVBoxLayout()
PrFit_lay_out = QHBoxLayout()
label_PrFit = QLabel("Use profile fitting")
PrFit_lay_out.addWidget(label_PrFit)
PrFit_comb_bx = DefaultComboBox("integration.profile.fitting",
["True", "False", "Auto"])
PrFit_comb_bx.currentIndexChanged.connect(self.combobox_changed)
PrFit_lay_out.addWidget(PrFit_comb_bx)
localLayout.addLayout(PrFit_lay_out)
hbox_lay_algorithm_53 = QHBoxLayout()
label_algorithm_53 = QLabel("Background algorithm")
hbox_lay_algorithm_53.addWidget(label_algorithm_53)
box_algorithm_53 = DefaultComboBox(
"integration.background.algorithm",
["simple", "null", "median", "gmodel", "glm"],
default_index=4)
box_algorithm_53.currentIndexChanged.connect(self.combobox_changed)
hbox_lay_algorithm_53.addWidget(box_algorithm_53)
localLayout.addLayout(hbox_lay_algorithm_53)
hbox_d_min = QHBoxLayout()
label_d_min = QLabel("High resolution limit")
hbox_d_min.addWidget(label_d_min)
d_min_spn_bx = QDoubleSpinBox()
d_min_spn_bx.local_path = "prediction.d_min"
d_min_spn_bx.setSpecialValueText("None")
d_min_spn_bx.setValue(0.0)
hbox_d_min.addWidget(d_min_spn_bx)
d_min_spn_bx.editingFinished.connect(self.spnbox_finished)
localLayout.addLayout(hbox_d_min)
hbox_lay_nproc = QHBoxLayout()
label_nproc = QLabel("Number of jobs")
# label_nproc.setFont( QFont("Monospace", 10))
hbox_lay_nproc.addWidget(label_nproc)
self.box_nproc = QSpinBox()
self.box_nproc.local_path = "integration.mp.nproc"
self.box_nproc.editingFinished.connect(self.spnbox_finished)
hbox_lay_nproc.addWidget(self.box_nproc)
localLayout.addLayout(hbox_lay_nproc)
self.inner_reset_btn = ResetButton()
localLayout.addWidget(self.inner_reset_btn)
localLayout.addStretch()
self.setLayout(localLayout)
self.box_nproc.tmp_lst = None
self.lst_var_widg = _get_all_direct_layout_widget_children(localLayout)
def setupUiForPlayer(self, pGrid, idx):
"""setup UI elements for a player"""
self.spValues[idx] = QSpinBox()
self.nameLabels[idx] = QLabel()
self.nameLabels[idx].setBuddy(self.spValues[idx])
self.windLabels[idx] = WindLabel()
pGrid.addWidget(self.nameLabels[idx], idx + 2, 0)
pGrid.addWidget(self.windLabels[idx], idx + 2, 1)
pGrid.addWidget(self.spValues[idx], idx + 2, 2)
self.wonBoxes[idx] = QCheckBox("")
pGrid.addWidget(self.wonBoxes[idx], idx + 2, 3)
self.wonBoxes[idx].clicked.connect(self.wonChanged)
self.spValues[idx].valueChanged.connect(self.slotInputChanged)
detailTab = QWidget()
self.detailTabs.addTab(detailTab, '')
self.details[idx] = QWidget()
detailTabLayout = QVBoxLayout(detailTab)
detailTabLayout.addWidget(self.details[idx])
detailTabLayout.addStretch()
self.detailsLayout[idx] = QVBoxLayout(self.details[idx])
def setupPlotSettingsFrame(self):
self.plotSettingsFrame = ctk.ctkCollapsibleButton()
self.plotSettingsFrame.text = "Plotting Settings"
self.plotSettingsFrame.collapsed = 1
plotSettingsFrameLayout = QFormLayout(self.plotSettingsFrame)
self.layout.addWidget(self.plotSettingsFrame)
# label map for probing
self.labelMapSelector = slicer.qMRMLNodeComboBox()
self.labelMapSelector.nodeTypes = ['vtkMRMLLabelMapVolumeNode']
self.labelMapSelector.toolTip = 'Label map to be probed'
self.labelMapSelector.setMRMLScene(slicer.mrmlScene)
self.labelMapSelector.addEnabled = 0
self.chartButton = QPushButton('Chart')
self.chartButton.setEnabled(False)
hbox = QHBoxLayout()
hbox.addWidget(QLabel('Probed label volume'))
hbox.addWidget(self.labelMapSelector)
hbox.addWidget(self.chartButton)
plotSettingsFrameLayout.addRow(hbox)
self.iCharting = QCheckBox('Interactive charting')
self.iCharting.setChecked(True)
plotSettingsFrameLayout.addRow(self.iCharting)
self.iChartingMode = QButtonGroup()
self.iChartingIntensity = QRadioButton('Signal intensity')
self.iChartingIntensityFixedAxes = QRadioButton(
'Fixed range intensity')
self.iChartingPercent = QRadioButton('Percentage change')
self.iChartingIntensity.setChecked(1)
self.iChartingMode.addButton(self.iChartingIntensity)
self.iChartingMode.addButton(self.iChartingIntensityFixedAxes)
self.iChartingMode.addButton(self.iChartingPercent)
hbox = QHBoxLayout()
self.plottingModeGroupBox = QGroupBox('Plotting mode:')
plottingModeLayout = QVBoxLayout()
self.plottingModeGroupBox.setLayout(plottingModeLayout)
plottingModeLayout.addWidget(self.iChartingIntensity)
plottingModeLayout.addWidget(self.iChartingIntensityFixedAxes)
plottingModeLayout.addWidget(self.iChartingPercent)
hbox.addWidget(self.plottingModeGroupBox)
self.showLegendCheckBox = QCheckBox('Display legend')
self.showLegendCheckBox.setChecked(0)
self.xLogScaleCheckBox = QCheckBox('Use log scale for X axis')
self.xLogScaleCheckBox.setChecked(0)
self.yLogScaleCheckBox = QCheckBox('Use log scale for Y axis')
self.yLogScaleCheckBox.setChecked(0)
self.plotGeneralSettingsGroupBox = QGroupBox('General Plot options:')
plotGeneralSettingsLayout = QVBoxLayout()
self.plotGeneralSettingsGroupBox.setLayout(plotGeneralSettingsLayout)
plotGeneralSettingsLayout.addWidget(self.showLegendCheckBox)
plotGeneralSettingsLayout.addWidget(self.xLogScaleCheckBox)
plotGeneralSettingsLayout.addWidget(self.yLogScaleCheckBox)
hbox.addWidget(self.plotGeneralSettingsGroupBox)
plotSettingsFrameLayout.addRow(hbox)
self.nFramesBaselineCalculation = QSpinBox()
self.nFramesBaselineCalculation.minimum = 1
hbox = QHBoxLayout()
hbox.addWidget(QLabel('Frame count(baseline calculation):'))
hbox.addWidget(self.nFramesBaselineCalculation)
plotSettingsFrameLayout.addRow(hbox)
def __init__(self, parent=None):
super(IntegrateSimplerParamTab, self).__init__()
# self.param_widget_parent = parent.param_widget_parent
localLayout = QVBoxLayout()
PrFit_lay_out = QHBoxLayout()
label_PrFit = QLabel("Use Profile Fitting")
PrFit_lay_out.addWidget(label_PrFit)
PrFit_comb_bx = QComboBox()
PrFit_comb_bx.local_path = "integration.profile.fitting"
PrFit_comb_bx.tmp_lst = []
PrFit_comb_bx.tmp_lst.append("True")
PrFit_comb_bx.tmp_lst.append("False")
PrFit_comb_bx.tmp_lst.append("Auto")
for lst_itm in PrFit_comb_bx.tmp_lst:
PrFit_comb_bx.addItem(lst_itm)
PrFit_comb_bx.currentIndexChanged.connect(self.combobox_changed)
PrFit_lay_out.addWidget(PrFit_comb_bx)
localLayout.addLayout(PrFit_lay_out)
hbox_lay_algorithm_53 = QHBoxLayout()
label_algorithm_53 = QLabel("Background Algorithm")
hbox_lay_algorithm_53.addWidget(label_algorithm_53)
box_algorithm_53 = QComboBox()
box_algorithm_53.local_path = "integration.background.algorithm"
box_algorithm_53.tmp_lst = []
box_algorithm_53.tmp_lst.append("simple")
box_algorithm_53.tmp_lst.append("null")
box_algorithm_53.tmp_lst.append("median")
box_algorithm_53.tmp_lst.append("gmodel")
box_algorithm_53.tmp_lst.append("glm")
for lst_itm in box_algorithm_53.tmp_lst:
box_algorithm_53.addItem(lst_itm)
box_algorithm_53.setCurrentIndex(4)
box_algorithm_53.currentIndexChanged.connect(self.combobox_changed)
hbox_lay_algorithm_53.addWidget(box_algorithm_53)
localLayout.addLayout(hbox_lay_algorithm_53)
hbox_d_min = QHBoxLayout()
label_d_min = QLabel("d_min")
hbox_d_min.addWidget(label_d_min)
d_min_spn_bx = QDoubleSpinBox()
d_min_spn_bx.local_path = "prediction.d_min"
d_min_spn_bx.setSpecialValueText("None")
d_min_spn_bx.setValue(0.0)
hbox_d_min.addWidget(d_min_spn_bx)
d_min_spn_bx.valueChanged.connect(self.spnbox_changed)
localLayout.addLayout(hbox_d_min)
hbox_lay_nproc = QHBoxLayout()
label_nproc = QLabel("Number of Jobs")
# label_nproc.setFont( QFont("Monospace", 10))
hbox_lay_nproc.addWidget(label_nproc)
self.box_nproc = QSpinBox()
self.box_nproc.local_path = "integration.mp.nproc"
self.box_nproc.valueChanged.connect(self.spnbox_changed)
hbox_lay_nproc.addWidget(self.box_nproc)
localLayout.addLayout(hbox_lay_nproc)
self.inner_reset_btn = ResetButton()
localLayout.addWidget(self.inner_reset_btn)
localLayout.addStretch()
self.setLayout(localLayout)
self.box_nproc.tmp_lst = None
self.lst_var_widg = _get_all_direct_layout_widget_children(localLayout)
def __init__(self, parent=None):
super(FindspotsSimplerParameterTab, self).__init__()
# self.param_widget_parent = parent.param_widget_parent
#TODO thinks about making "None equivalent to 1"
xds_gain_label = QLabel("Gain")
xds_gain_spn_bx = QDoubleSpinBox()
xds_gain_spn_bx.local_path = "spotfinder.threshold.dispersion.gain"
xds_gain_spn_bx.setSpecialValueText("None")
xds_gain_spn_bx.setValue(1.0)
xds_gain_spn_bx.valueChanged.connect(self.spnbox_changed)
xds_sigma_background_label = QLabel("Sigma Background")
xds_sigma_background_spn_bx = QDoubleSpinBox()
xds_sigma_background_spn_bx.setValue(6.0)
xds_sigma_background_spn_bx.local_path = (
"spotfinder.threshold.dispersion.sigma_background")
xds_sigma_background_spn_bx.valueChanged.connect(self.spnbox_changed)
xds_sigma_strong_label = QLabel("Sigma Strong")
xds_sigma_strong_spn_bx = QDoubleSpinBox()
xds_sigma_strong_spn_bx.setValue(3.0)
xds_sigma_strong_spn_bx.local_path = (
"spotfinder.threshold.dispersion.sigma_strong")
xds_sigma_strong_spn_bx.valueChanged.connect(self.spnbox_changed)
xds_global_threshold_label = QLabel("Global Threshold")
xds_global_threshold_spn_bx = QDoubleSpinBox()
xds_global_threshold_spn_bx.local_path = (
"spotfinder.threshold.dispersion.global_threshold")
xds_global_threshold_spn_bx.valueChanged.connect(self.spnbox_changed)
localLayout = QVBoxLayout()
xds_gain_hb = QHBoxLayout()
xds_gain_hb.addWidget(xds_gain_label)
xds_gain_hb.addWidget(xds_gain_spn_bx)
localLayout.addLayout(xds_gain_hb)
xds_sigma_background_hb = QHBoxLayout()
xds_sigma_background_hb.addWidget(xds_sigma_background_label)
xds_sigma_background_hb.addWidget(xds_sigma_background_spn_bx)
localLayout.addLayout(xds_sigma_background_hb)
xds_sigma_strong_hb = QHBoxLayout()
xds_sigma_strong_hb.addWidget(xds_sigma_strong_label)
xds_sigma_strong_hb.addWidget(xds_sigma_strong_spn_bx)
localLayout.addLayout(xds_sigma_strong_hb)
xds_global_threshold_hb = QHBoxLayout()
xds_global_threshold_hb.addWidget(xds_global_threshold_label)
xds_global_threshold_hb.addWidget(xds_global_threshold_spn_bx)
localLayout.addLayout(xds_global_threshold_hb)
hbox_lay_nproc = QHBoxLayout()
label_nproc = QLabel("Number of Jobs")
# label_nproc.setPalette(palette_object)
# label_nproc.setFont( QFont("Monospace", 10))
hbox_lay_nproc.addWidget(label_nproc)
self.box_nproc = QSpinBox()
self.box_nproc.local_path = "spotfinder.mp.nproc"
self.box_nproc.valueChanged.connect(self.spnbox_changed)
hbox_lay_nproc.addWidget(self.box_nproc)
localLayout.addLayout(hbox_lay_nproc)
self.inner_reset_btn = ResetButton()
localLayout.addWidget(self.inner_reset_btn)
localLayout.addStretch()
self.setLayout(localLayout)
self.lst_var_widg = _get_all_direct_layout_widget_children(localLayout)
