args = sys.argv[1:]
def cmd_in(cmds):
return any(c in args for c in cmds)
if abspath(dirname(__file__)) != abspath(os.getcwd()):
logger.error('Please change to ' + dirname(__file__) +
' before running setup.py')
sys.exit()
if cmd_in(['clean', 'sdist']):
logger.info('Cleaning up binary files...')
compile_aligner(logger, only_clean=True)
compile_glimmer(only_clean=True)
compile_gage(only_clean=True)
compile_bwa(only_clean=True)
compile_bedtools(only_clean=True)
for fpath in [fn for fn in glob(join(quast_package, '*.pyc'))]:
os.remove(fpath)
for fpath in [
fn for fn in glob(join(quast_package, 'html_saver', '*.pyc'))
]:
os.remove(fpath)
for fpath in [
fn
for fn in glob(join(quast_package, 'site_packages', '*', '*.pyc'))
]:
os.remove(fpath)
if 'bdist_wheel' in sys.argv:
raise RuntimeError(
"This setup.py does not support wheels. setup.py install will be run automatically..."
)
if abspath(dirname(__file__)) != abspath(os.getcwd()):
logger.error('Please change to ' + dirname(__file__) +
' before running setup.py')
sys.exit()
if cmd_in(['clean', 'sdist']):
logger.info('Cleaning up binary files...')
compile_aligner(logger, only_clean=True)
compile_gnuplot(logger, only_clean=True)
compile_glimmer(logger, only_clean=True)
compile_gage(only_clean=True)
compile_bwa(logger, only_clean=True)
compile_bedtools(logger, only_clean=True)
for fpath in [fn for fn in glob(join(quast_package, '*.pyc'))]:
os.remove(fpath)
for fpath in [
fn for fn in glob(join(quast_package, 'html_saver', '*.pyc'))
]:
os.remove(fpath)
for fpath in [
fn
for fn in glob(join(quast_package, 'site_packages', '*', '*.pyc'))
]:
os.remove(fpath)
args = sys.argv[1:]
def cmd_in(cmds):
return any(c in args for c in cmds)
if abspath(dirname(__file__)) != abspath(os.getcwd()):
logger.error('Please change to ' + dirname(__file__) + ' before running setup.py')
sys.exit()
if cmd_in(['clean', 'sdist']):
logger.info('Cleaning up binary files...')
compile_aligner(logger, only_clean=True)
compile_glimmer(logger, only_clean=True)
compile_gage(only_clean=True)
compile_bwa(logger, only_clean=True)
compile_bedtools(logger, only_clean=True)
for fpath in [fn for fn in glob(join(quast_package, '*.pyc'))]: os.remove(fpath)
for fpath in [fn for fn in glob(join(quast_package, 'html_saver', '*.pyc'))]: os.remove(fpath)
for fpath in [fn for fn in glob(join(quast_package, 'site_packages', '*', '*.pyc'))]: os.remove(fpath)
if cmd_in(['clean']):
if isdir('build'):
shutil.rmtree('build')
if isdir('dist'):
shutil.rmtree('dist')
if isdir(name + '.egg-info'):
shutil.rmtree(name + '.egg-info')
download_manta(logger, only_clean=False)