def test_register_task_handler(self):
obj = MergeSamFiles()
obj._handlers = {}
target_handler = RatatoskHandler(label="target_generator_handler", mod="test.test_handler.local_target_generator")
self.assertEqual(obj._handlers, {})
register_task_handler(obj, target_handler)
self.assertEqual(fullclassname(obj._handlers['target_generator_handler']), "test.test_handler.local_target_generator")
def requires(self):
if self.target_generator_handler:
cls = self.parent()[0]
sources = []
if "target_generator_handler" not in self._handlers.keys():
tgf = RatatoskHandler(label="target_generator_handler", mod=self.target_generator_handler)
register_task_handler(self, tgf)
sources = self._handlers["target_generator_handler"](self)
return [cls(target=src) for src in sources]
else:
return [cls(target=source) for cls, source in izip(self.parent(), self.source())]
def test_register_task_handler(self):
obj = MergeSamFiles()
obj._handlers = {}
target_handler = RatatoskHandler(
label="target_generator_handler",
mod="test.test_handler.local_target_generator")
self.assertEqual(obj._handlers, {})
register_task_handler(obj, target_handler)
self.assertEqual(
fullclassname(obj._handlers['target_generator_handler']),
"test.test_handler.local_target_generator")
def requires(self):
cls = self.parent()[0]
sources = []
if self.target_generator_handler and "target_generator_handler" not in self._handlers.keys():
tgf = RatatoskHandler(label="target_generator_handler", mod=self.target_generator_handler)
register_task_handler(self, tgf)
if not "target_generator_handler" in self._handlers.keys():
logging.warn("vcf merge requires a target generator handler; no defaults are as of yet implemented")
return []
sources = self._handlers["target_generator_handler"](self)
return [cls(target=src) for src in sources]
def requires(self):
cls = self.parent()[0]
sources = []
cnf = get_config()
if self.target_generator_handler and "target_generator_handler" not in self._handlers.keys():
tgf = RatatoskHandler(label="target_generator_handler", mod=self.target_generator_handler)
register_task_handler(self, tgf)
if not "target_generator_handler" in self._handlers.keys():
logging.warn("MergeSamFiles requires a target generator handler; no defaults are as of yet implemented")
return []
sources = list(set(self._handlers["target_generator_handler"](self)))
return [cls(target=src) for src in sources]
def requires(self):
if self.target_generator_handler:
cls = self.parent()[0]
sources = []
if "target_generator_handler" not in self._handlers.keys():
tgf = RatatoskHandler(label="target_generator_handler",
mod=self.target_generator_handler)
register_task_handler(self, tgf)
sources = self._handlers["target_generator_handler"](self)
return [cls(target=src) for src in sources]
else:
return [
cls(target=source)
for cls, source in izip(self.parent(), self.source())
]
