def setUp(self):
self.referral_a = Referral(name="A", clicks=0)
self.referral_a.save()
self.referral_b = Referral(name="B", clicks=0)
self.referral_b.save()
self.referral_c = Referral(name="C", clicks=0, active=False)
self.referral_c.save()
self.detail_view = ReferralDetail.as_view()
self.list_view = ReferralList.as_view()
def signup(request):
if request.method == "POST":
username = request.POST.get("username")
email = request.POST.get("email")
user_n = User.objects.filter(username=username)
user_e = User.objects.filter(email=email)
password1 = request.POST.get("password1")
code = request.POST.get("slug")
if user_n.count() == 1 or user_e.count() == 1:
messages.warning(
request,
"Username/email already taken or log in to complete signup")
return redirect("register:signin")
if code is "":
'''If referral code is empty'''
user = User.objects.create_user(username=username, email=email)
Referral(user=user).save()
user.set_password(password1)
user.save()
login(request, user)
Pay(user=user, email=email).save()
#Customer(user=user).save()
return redirect("register:welcome")
try:
ref_user = Referral.objects.get(slug=code)
except:
messages.warning(request, "Wrong referral code")
return redirect("register:signin")
'''If referral code is not empty'''
user = User.objects.create_user(username=username, email=email)
referral = Referral(user=user,
referred_by=ref_user.user,
referred=True)
ref_user.referred_users.add(user)
user.set_password(password1)
user.save()
referral.save()
ref_user.save()
login(request, user)
Pay(user=user, email=email).save()
#Customer(user=user).save()
message_to_customer(email)
return redirect("register:welcome")
else:
return render(request, "register/signin.html")
class APITestCase(TestCase):
def setUp(self):
self.referral_a = Referral(name="A", clicks=0)
self.referral_a.save()
self.referral_b = Referral(name="B", clicks=0)
self.referral_b.save()
self.referral_c = Referral(name="C", clicks=0, active=False)
self.referral_c.save()
self.detail_view = ReferralDetail.as_view()
self.list_view = ReferralList.as_view()
def test_can_see_active_referrals(self):
factory = APIRequestFactory()
request = factory.get('/api/referrals/')
request.user = 1
response = self.list_view(request)
self.assertEqual(2, response.data['count'])
def patient_detail(request, pk):
pt = get_object_or_404(mymodels.Patient, pk=pk)
# Special zipped list of action item types so they can be looped over.
# List 1: Labels for the panel objects of the action items
# List 2: Action Item lists based on type (active, pending, completed)
# List 3: Title labels for the action items
# List 4: True and False determines if the link should be for
# done_action_item or update_action_item
active_ais = []
inactive_ais = []
done_ais = []
# Add action items for apps that are turned on in Osler's base settings
# OSLER_TODO_LIST_MANAGERS contains app names like referral which contain
# tasks for clinical teams to carry out (e.g., followup with patient)
for app, model in settings.OSLER_TODO_LIST_MANAGERS:
ai = apps.get_model(app, model)
active_ais.extend(ai.objects.get_active(patient=pt))
inactive_ais.extend(ai.objects.get_inactive(patient=pt))
done_ais.extend(ai.objects.get_completed(patient=pt))
# Calculate the total number of action items for this patient,
# This total includes all apps that that have associated
# tasks requiring clinical followup (e.g., referral followup request)
total_ais = len(active_ais) + len(inactive_ais) + len(done_ais)
zipped_ai_list = zip(['collapse5', 'collapse6', 'collapse7'],
[active_ais, inactive_ais, done_ais],
['Active Action Items', 'Pending Action Items',
'Completed Action Items'],
[True, True, False])
# Provide referral list for patient page (includes specialty referrals)
referrals = Referral.objects.filter(
patient=pt,
followuprequest__in=FollowupRequest.objects.all()
)
# Add FQHC referral status
# Note it is possible for a patient to have been referred multiple times
# This creates some strage cases (e.g., first referral was lost to followup
# but the second one was successful). In these cases, the last referral
# status becomes the current status
fqhc_referrals = Referral.objects.filter(patient=pt, kind__is_fqhc=True)
referral_status_output = Referral.aggregate_referral_status(fqhc_referrals)
# Pass referral follow up set to page
referral_followups = PatientContact.objects.filter(patient=pt)
total_followups = referral_followups.count() + len(pt.followup_set())
appointments = Appointment.objects \
.filter(patient=pt) \
.order_by('clindate', 'clintime')
# d = collections.OrderedDict()
# for a in appointments:
# if a.clindate in d:
# d[a.clindate].append(a)
# else:
# d[a.clindate] = [a]
future_date_appointments = appointments.filter(
clindate__gte=datetime.date.today()).order_by('clindate', 'clintime')
previous_date_appointments = appointments.filter(
clindate__lt=datetime.date.today()).order_by('-clindate', 'clintime')
future_apt = collections.OrderedDict()
for a in future_date_appointments:
if a.clindate in future_apt:
future_apt[a.clindate].append(a)
else:
future_apt[a.clindate] = [a]
previous_apt = collections.OrderedDict()
for a in previous_date_appointments:
if a.clindate in previous_apt:
previous_apt[a.clindate].append(a)
else:
previous_apt[a.clindate] = [a]
zipped_apt_list = zip(
['collapse8', 'collapse9'],
[future_date_appointments, previous_date_appointments],
['Future Appointments', 'Past Appointments'],
[future_apt, previous_apt])
return render(request,
'pttrack/patient_detail.html',
{'zipped_ai_list': zipped_ai_list,
'total_ais': total_ais,
'referral_status': referral_status_output,
'referrals': referrals,
'referral_followups': referral_followups,
'total_followups': total_followups,
'patient': pt,
'appointments_by_date': future_apt,
'zipped_apt_list': zipped_apt_list})
def harvest(self,
create_tasks=True,
create_locations=True,
create_records=True,
assignee=False):
"""Undertake the harvest process for this emailed referral.
"""
from .utils import query_slip_esri
if self.processed:
return
User = get_user_model()
dbca = Agency.objects.get(slug='dbca')
wapc = Organisation.objects.get(slug='wapc')
assess_task = TaskType.objects.get(name='Assess a referral')
if not assignee:
assignee_default = User.objects.get(
username=settings.REFERRAL_ASSIGNEE_FALLBACK)
else:
assignee_default = assignee
actions = []
attachments = self.emailattachment_set.all()
self.log = ''
# Emails without attachments are usually reminder notices.
if not attachments.exists():
s = 'Skipping harvested referral {} (no attachments)'.format(self)
LOGGER.info(s)
self.log = s
self.processed = True
self.save()
actions.append('{} {}'.format(datetime.now().isoformat(), s))
return actions
# Must be an attachment named 'Application.xml' present to import.
if not attachments.filter(name__istartswith='application.xml'):
s = 'Skipping harvested referral {} (no XML attachment)'.format(
self.pk)
LOGGER.info(s)
self.log = s
self.processed = True
self.save()
actions.append('{} {}'.format(datetime.now().isoformat(), s))
return actions
else:
xml_file = attachments.get(name__istartswith='application.xml')
# Parse the attached XML file.
try:
d = xmltodict.parse(xml_file.attachment.read())
except Exception as e:
s = 'Harvested referral {} parsing of application.xml failed'.format(
self.pk)
LOGGER.error(s)
LOGGER.exception(e)
self.log = self.log + '{}\n{}\n'.format(s, e)
self.processed = True
self.save()
actions.append('{} {}'.format(datetime.now().isoformat(), s))
app = d['APPLICATION']
reference = app['WAPC_APPLICATION_NO']
# New/existing referral object.
if Referral.objects.current().filter(reference__iexact=reference):
# Note if the the reference no. exists in PRS already.
s = 'Referral ref. {} is already in database; using existing referral'.format(
reference)
LOGGER.info(s)
self.log = self.log + '{}\n'.format(s)
actions.append('{} {}'.format(datetime.now().isoformat(), s))
new_ref = Referral.objects.current().filter(
reference__iexact=reference).order_by('-pk').first()
referral_preexists = True
else:
# No match with existing references.
s = 'Importing harvested referral ref. {} as new entity'.format(
reference)
LOGGER.info(s)
self.log = '{}\n'.format(s)
actions.append('{} {}'.format(datetime.now().isoformat(), s))
new_ref = Referral(reference=reference)
referral_preexists = False
# Referral type
try:
ref_type = ReferralType.objects.filter(
name__istartswith=app['APP_TYPE'])[0]
except Exception:
s = 'Referral type {} is not recognised type; skipping'.format(
app['APP_TYPE'])
LOGGER.warning(s)
self.log = self.log + '{}\n'.format(s)
self.processed = True
self.save()
actions.append('{} {}'.format(datetime.now().isoformat(), s))
return actions
# Determine the intersecting region(s).
regions = []
assigned = None
# ADDRESS_DETAIL may or may not be a list :/
if not isinstance(app['ADDRESS_DETAIL']['DOP_ADDRESS_TYPE'], list):
addresses = [app['ADDRESS_DETAIL']['DOP_ADDRESS_TYPE']]
else:
addresses = app['ADDRESS_DETAIL']['DOP_ADDRESS_TYPE']
# Address geometry:
locations = []
if create_locations:
for a in addresses:
# Use the long/lat info to intersect DBCA regions.
try:
p = Point(x=float(a['LONGITUDE']), y=float(a['LATITUDE']))
for r in Region.objects.all():
if r.region_mpoly and r.region_mpoly.intersects(
p) and r not in regions:
regions.append(r)
intersected_region = True
except Exception:
s = 'Address long/lat could not be parsed ({}, {})'.format(
a['LONGITUDE'], a['LATITUDE'])
LOGGER.warning(s)
self.log = self.log + '{}\n'.format(s)
actions.append('{} {}'.format(datetime.now().isoformat(),
s))
intersected_region = False
# Use the PIN field to try returning geometry from SLIP.
if 'PIN' in a and a['PIN']:
try:
resp = query_slip_esri(a['PIN'])
features = resp.json()[
'features'] # List of spatial features.
if len(features) > 0:
a['FEATURES'] = features
locations.append(
a) # A dict for each address location.
# If we haven't yet, use the feature geom to intersect DBCA regions.
if not intersected_region:
for f in features:
att = f['attributes']
if 'centroid_longitude' in att and 'centroid_latitude' in att:
p = Point(x=att['centroid_longitude'],
y=att['centroid_latitude'])
for r in Region.objects.all():
if r.region_mpoly and r.region_mpoly.intersects(
p) and r not in regions:
regions.append(r)
s = 'Address PIN {} returned geometry from SLIP'.format(
a['PIN'])
self.log = self.log + '{}\n'.format(s)
LOGGER.info(s)
except Exception as e:
s = 'Error querying Landgate SLIP for spatial data (referral ref. {})'.format(
reference)
LOGGER.error(s)
LOGGER.error(resp.content)
LOGGER.exception(e)
self.log = self.log + '{}\n{}\n{}\n'.format(
s, resp.content, e)
else:
s = 'Address PIN could not be parsed ({})'.format(a['PIN'])
LOGGER.warning(s)
self.log = self.log + '{}\n'.format(s)
regions = set(regions)
# Business rules:
# Didn't intersect a region? Might be bad geometry in the XML.
# Likewise if >1 region was intersected, default to Swan Region
# and the designated fallback user.
if len(regions) == 0:
region = Region.objects.get(name='Swan')
assigned = assignee_default
s = 'No regions were intersected, defaulting to {} ({})'.format(
region, assigned)
LOGGER.info(s)
self.log = self.log + '{}\n'.format(s)
elif len(regions) > 1:
region = Region.objects.get(name='Swan')
assigned = assignee_default
s = '>1 regions were intersected ({}), defaulting to {} ({})'.format(
regions, region, assigned)
LOGGER.info(s)
self.log = self.log + '{}\n'.format(s)
else:
region = regions.pop()
try:
assigned = RegionAssignee.objects.get(region=region).user
except Exception:
s = 'No default assignee set for {}, defaulting to {}'.format(
region, assignee_default)
LOGGER.info(s)
self.log = self.log + '{}\n'.format(s)
actions.append('{} {}'.format(datetime.now().isoformat(), s))
assigned = assignee_default
# Create/update the referral in PRS.
new_ref.type = ref_type
new_ref.agency = dbca
new_ref.referring_org = wapc
new_ref.reference = reference
new_ref.description = app[
'DEVELOPMENT_DESCRIPTION'] if 'DEVELOPMENT_DESCRIPTION' in app else ''
new_ref.referral_date = self.received.date()
new_ref.address = app['LOCATION'] if 'LOCATION' in app else ''
with create_revision():
new_ref.save()
set_comment('Initial version.')
if referral_preexists:
s = 'PRS referral updated: {}'.format(new_ref)
LOGGER.info(s)
self.log = self.log + '{}\n'.format(s)
actions.append('{} {}'.format(datetime.now().isoformat(), s))
else:
s = 'New PRS referral generated: {}'.format(new_ref)
LOGGER.info(s)
self.log = self.log + '{}\n'.format(s)
actions.append('{} {}'.format(datetime.now().isoformat(), s))
# Assign to a region.
new_ref.regions.add(region)
# Assign an LGA.
try:
new_ref.lga = LocalGovernment.objects.get(
name=app['LOCAL_GOVERNMENT'])
new_ref.save()
except Exception:
s = 'LGA {} was not recognised'.format(app['LOCAL_GOVERNMENT'])
LOGGER.warning(s)
self.log = self.log + '{}\n'.format(s)
actions.append('{} {}'.format(datetime.now().isoformat(), s))
# Add triggers to the new referral.
if 'MRSZONE_TEXT' in app:
triggers = [i.strip() for i in app['MRSZONE_TEXT'].split(',')]
else:
triggers = []
added_trigger = False
for i in triggers:
# A couple of exceptions for DoP triggers follow (specific -> general trigger).
if i.startswith('BUSH FOREVER SITE'):
added_trigger = True
new_ref.dop_triggers.add(
DopTrigger.objects.get(name='Bush Forever site'))
elif i.startswith('DPW ESTATE'):
added_trigger = True
new_ref.dop_triggers.add(
DopTrigger.objects.get(name='Parks and Wildlife estate'))
elif i.find('REGIONAL PARK') > -1:
added_trigger = True
new_ref.dop_triggers.add(
DopTrigger.objects.get(name='Regional Park'))
# All other triggers (don't use exists() in case of duplicates).
elif DopTrigger.objects.current().filter(
name__istartswith=i).count() == 1:
added_trigger = True
new_ref.dop_triggers.add(
DopTrigger.objects.current().get(name__istartswith=i))
# If we didn't link any DoP triggers, link the "No Parks and Wildlife trigger" tag.
if not added_trigger:
new_ref.dop_triggers.add(
DopTrigger.objects.get(name='No Parks and Wildlife trigger'))
# Add locations to the new referral (one per polygon in each MP geometry).
if create_locations:
new_locations = []
for l in locations:
for f in l['FEATURES']:
poly = Polygon(f['geometry']['rings'][0])
geom = GEOSGeometry(poly.wkt)
new_loc = Location(address_suffix=l['NUMBER_FROM_SUFFIX'],
road_name=l['STREET_NAME'],
road_suffix=l['STREET_SUFFIX'],
locality=l['SUBURB'],
postcode=l['POSTCODE'],
referral=new_ref,
poly=geom)
try: # NUMBER_FROM XML fields started to contain non-integer values :(
new_loc.address_no = int(
l['NUMBER_FROM']) if l['NUMBER_FROM'] else None
except:
pass # Just ignore the value if it can't be parsed as an integer.
with create_revision():
new_loc.save()
set_comment('Initial version.')
new_locations.append(new_loc)
s = 'New PRS location generated: {}'.format(new_loc)
LOGGER.info(s)
self.log = self.log + '{}\n'.format(s)
actions.append('{} {}'.format(datetime.now().isoformat(),
s))
# Check to see if new locations intersect with any existing locations.
intersecting = []
for l in new_locations:
other_l = Location.objects.current().exclude(pk=l.pk).filter(
poly__isnull=False, poly__intersects=l.poly)
if other_l.exists():
intersecting += list(other_l)
# For any intersecting locations, relate the new and existing referrals.
for l in intersecting:
if l.referral.pk != new_ref.pk:
new_ref.add_relationship(l.referral)
s = 'New referral {} related to existing referral {}'.format(
new_ref.pk, l.referral.pk)
LOGGER.info(s)
self.log = self.log + '{}\n'.format(s)
actions.append('{} {}'.format(datetime.now().isoformat(),
s))
# Create an "Assess a referral" task and assign it to a user.
if create_tasks:
new_task = Task(type=assess_task,
referral=new_ref,
start_date=new_ref.referral_date,
description=new_ref.description,
assigned_user=assigned)
new_task.state = assess_task.initial_state
if 'DUE_DATE' in app and app['DUE_DATE']:
try:
due = datetime.strptime(app['DUE_DATE'], '%d-%b-%y')
except Exception:
due = datetime.today() + timedelta(assess_task.target_days)
else:
due = datetime.today() + timedelta(assess_task.target_days)
new_task.due_date = due
with create_revision():
new_task.save()
set_comment('Initial version.')
s = 'New PRS task generated: {} assigned to {}'.format(
new_task, assigned.get_full_name())
LOGGER.info(s)
self.log = self.log + '{}\n'.format(s)
actions.append('{} {}'.format(datetime.now().isoformat(), s))
# Email the assigned user about the new task.
new_task.email_user()
s = 'Task assignment email sent to {}'.format(assigned.email)
LOGGER.info(s)
self.log = self.log + '{}\n'.format(s)
actions.append('{} {}'.format(datetime.now().isoformat(), s))
# Save the EmailedReferral as a record on the referral.
if create_records:
new_record = Record.objects.create(name=self.subject,
referral=new_ref,
order_date=datetime.today())
file_name = 'emailed_referral_{}.html'.format(reference)
new_file = ContentFile(self.body)
new_record.uploaded_file.save(file_name, new_file)
with create_revision():
new_record.save()
set_comment('Initial version.')
s = 'New PRS record generated: {}'.format(new_record)
LOGGER.info(s)
self.log = self.log + '{}\n'.format(s)
actions.append('{} {}'.format(datetime.now().isoformat(), s))
# Add records to the referral (one per attachment).
for i in attachments:
new_record = Record.objects.create(name=i.name,
referral=new_ref,
order_date=datetime.today())
# Duplicate the uploaded file.
new_file = ContentFile(i.attachment.read())
new_record.uploaded_file.save(i.name, new_file)
new_record.save()
s = 'New PRS record generated: {}'.format(new_record)
LOGGER.info(s)
self.log = self.log + '{}\n'.format(s)
actions.append('{} {}'.format(datetime.now().isoformat(), s))
# Link the attachment to the new, generated record.
i.record = new_record
i.save()
# Link the emailed referral to the new or existing referral.
self.referral = new_ref
self.processed = True
self.save()
return actions
def patient_detail(request, pk):
pt = get_object_or_404(mymodels.Patient, pk=pk)
# Special zipped list of action item types so they can be looped over.
# List 1: Labels for the panel objects of the action items
# List 2: Action Item lists based on type (active, pending, completed)
# List 3: Title labels for the action items
# List 4: True and False determines if the link should be for
# done_action_item or update_action_item
active_ais = []
inactive_ais = []
done_ais = []
# Add action items for apps that are turned on in Osler's base settings
# OSLER_TODO_LIST_MANAGERS contains app names like referral which contain
# tasks for clinical teams to carry out (e.g., followup with patient)
for app, model in settings.OSLER_TODO_LIST_MANAGERS:
ai = apps.get_model(app, model)
active_ais.extend(ai.objects.get_active(patient=pt))
inactive_ais.extend(ai.objects.get_inactive(patient=pt))
done_ais.extend(ai.objects.get_completed(patient=pt))
# Calculate the total number of action items for this patient,
# This total includes all apps that that have associated
# tasks requiring clinical followup (e.g., referral followup request)
total_ais = len(active_ais) + len(inactive_ais) + len(done_ais)
zipped_ai_list = zip(['collapse5', 'collapse6', 'collapse7'],
[active_ais, inactive_ais, done_ais], [
'Active Action Items', 'Pending Action Items',
'Completed Action Items'
], [True, True, False])
# Provide referral list for patient page (includes specialty referrals)
referrals = Referral.objects.filter(
patient=pt, followuprequest__in=FollowupRequest.objects.all())
# Add FQHC referral status
# Note it is possible for a patient to have been referred multiple times
# This creates some strage cases (e.g., first referral was lost to followup
# but the second one was successful). In these cases, the last referral
# status becomes the current status
fqhc_referrals = Referral.objects.filter(patient=pt, kind__is_fqhc=True)
referral_status_output = Referral.aggregate_referral_status(fqhc_referrals)
# Pass referral follow up set to page
referral_followups = PatientContact.objects.filter(patient=pt)
total_followups = referral_followups.count() + len(pt.followup_set())
appointments = Appointment.objects \
.filter(patient=pt) \
.order_by('clindate', 'clintime')
# d = collections.OrderedDict()
# for a in appointments:
# if a.clindate in d:
# d[a.clindate].append(a)
# else:
# d[a.clindate] = [a]
future_date_appointments = appointments.filter(
clindate__gte=datetime.date.today()).order_by('clindate', 'clintime')
previous_date_appointments = appointments.filter(
clindate__lt=datetime.date.today()).order_by('-clindate', 'clintime')
future_apt = collections.OrderedDict()
for a in future_date_appointments:
if a.clindate in future_apt:
future_apt[a.clindate].append(a)
else:
future_apt[a.clindate] = [a]
previous_apt = collections.OrderedDict()
for a in previous_date_appointments:
if a.clindate in previous_apt:
previous_apt[a.clindate].append(a)
else:
previous_apt[a.clindate] = [a]
zipped_apt_list = zip(
['collapse8', 'collapse9'],
[future_date_appointments, previous_date_appointments],
['Future Appointments', 'Past Appointments'],
[future_apt, previous_apt])
return render(
request, 'pttrack/patient_detail.html', {
'zipped_ai_list': zipped_ai_list,
'total_ais': total_ais,
'referral_status': referral_status_output,
'referrals': referrals,
'referral_followups': referral_followups,
'total_followups': total_followups,
'patient': pt,
'appointments_by_date': future_apt,
'zipped_apt_list': zipped_apt_list
})