def method2():
try:
cmdArgs = argparse.Namespace(help=False,
input_prefix='data',
log='INFO',
method=2,
nsize=300,
output='reference',
output_prefix='reference.300',
seq_desc_file=None,
simphy_path='testwsimphy/')
prog = refselector.ReferenceSelection(cmdArgs)
prog.run()
except refselector.NRSException as ex:
if ex.expression:
APPLOGGER.info("REFSELECTOR finished properly.")
APPLOGGER.info("Elapsed time (ETA):\t{0}".format(ex.time))
APPLOGGER.info("Ending at:\t{0}".format(
datetime.datetime.now().strftime("%a, %b %d %Y. %I:%M:%S %p")))
sys.exit()
else:
APPLOGGER.error(ex.message)
APPLOGGER.error("Elapsed time (ETA):\t{0}".format(ex.time))
APPLOGGER.error("Ending at:\t{0}".format(
datetime.datetime.now().strftime("%a, %b %d %Y. %I:%M:%S %p")))
sys.exit(-1)
except KeyboardInterrupt:
APPLOGGER.error(
"{0}{1}\nProgram has been interrupted.{2}\nPlease run again for the expected outcome.\n{3}\n"
.format("\033[91m", "\033[1m", "\033[0m", LINE))
sys.exit(-1)
def main():
try:
cmdArgs = handlingParameters()
print(cmdArgs)
APPLOGGER.setLevel(cmdArgs.log.upper())
APPLOGGER.debug("Args. introduced: {}".format(cmdArgs))
prog = refselector.ReferenceSelection(cmdArgs)
prog.run()
except refselector.NRSException as ex:
if ex.expression:
APPLOGGER.info("REFSELECTOR finished properly.")
APPLOGGER.info("Elapsed time (ETA):\t{0}".format(ex.time))
APPLOGGER.info("Ending at:\t{0}".format(
datetime.datetime.now().strftime("%a, %b %d %Y. %I:%M:%S %p")))
sys.exit()
else:
APPLOGGER.error(ex.message)
APPLOGGER.error("Elapsed time (ETA):\t{0}".format(ex.time))
APPLOGGER.error("Ending at:\t{0}".format(
datetime.datetime.now().strftime("%a, %b %d %Y. %I:%M:%S %p")))
sys.exit(-1)
except KeyboardInterrupt:
APPLOGGER.error(
"{0}{1}\nProgram has been interrupted.{2}\nPlease run again for the expected outcome.\n{3}\n"
.format("\033[91m", "\033[1m", "\033[0m", LINE))
sys.exit(-1)
