def init_assembly_releases(request):
# default is ensembl
all_assembly_releases = json.dumps(
ReleaseUtils.get_all_assembly_releases())
all_assembly_releases_refseq = json.dumps(
ReleaseUtils.get_all_assembly_releases("RefSeq"))
all_assembly_releases_ensembl = json.dumps(
ReleaseUtils.get_all_assembly_releases("Ensembl"))
current_release = ReleaseUtils.get_latest_release()
current_assembly = ReleaseUtils.get_latest_assembly()
source_name = ReleaseUtils.get_default_source()
init_hash = {
"all_assembly_releases": all_assembly_releases,
"all_assembly_releases_ensembl": all_assembly_releases_ensembl,
"all_assembly_releases_refseq": all_assembly_releases_refseq,
"current_release": current_release,
"current_assembly": current_assembly,
"release_name": current_release,
"assembly_name": current_assembly,
'release_name_compare': int(current_release) - 1,
'assembly_name_compare': current_assembly,
'source_name': source_name
}
return init_hash
def init_assembly_releases(request):
# default is ensembl
all_assembly_releases = json.dumps(
ReleaseUtils.get_all_assembly_releases())
all_assembly_releases_refseq = json.dumps(
ReleaseUtils.get_all_assembly_releases("RefSeq"))
all_assembly_releases_ensembl = json.dumps(
ReleaseUtils.get_all_assembly_releases("Ensembl"))
current_release = ReleaseUtils.get_latest_release()
current_assembly = ReleaseUtils.get_latest_assembly()
source_name = ReleaseUtils.get_default_source()
software_release_tag = "1.0.0" if settings.SOFTWARE_RELEASE_TAG is None else settings.SOFTWARE_RELEASE_TAG
init_hash = {
"all_assembly_releases": all_assembly_releases,
"all_assembly_releases_ensembl": all_assembly_releases_ensembl,
"all_assembly_releases_refseq": all_assembly_releases_refseq,
"current_release": current_release,
"current_assembly": current_assembly,
"release_name": current_release,
"assembly_name": current_assembly,
'release_name_compare': int(current_release) - 1,
'assembly_name_compare': current_assembly,
'source_name': source_name,
'software_release_tag': software_release_tag
}
return init_hash
def test_get_all_assembly_releases(self):
all_assembly_releases = ReleaseUtils.get_all_assembly_releases()
expected_result = {'GRCh37': ['92'], 'GRCh38': ['92', '91']}
self.assertDictEqual(all_assembly_releases, expected_result,
"Got the right assembly_releases")
all_assembly_releases_refseq = ReleaseUtils.get_all_assembly_releases(
source_name="RefSeq")
expected_result_refseq = {'GRCh38': ['92']}
self.assertDictEqual(all_assembly_releases_refseq,
expected_result_refseq,
"Got the expected result for RefSeq")