def test_add_output(self, data_mock):
data_mock.configure_mock(
output={
'fastq': {
'file': 'reads.fq'
},
'fasta': {
'file': 'genome.fa'
},
},
process_output_schema=[
{
'type': 'basic:file:',
'name': 'fastq',
'label': 'FASTQ'
},
{
'type': 'basic:file:',
'name': 'fasta',
'label': 'FASTA'
},
],
)
files_list = Data._files_dirs(data_mock,
'file',
field_name="output.fastq")
self.assertEqual(files_list, ['reads.fq'])
files_list = Data._files_dirs(data_mock, 'file', field_name="fastq")
self.assertEqual(files_list, ['reads.fq'])
def test_add_output(self, data_mock):
data_mock.configure_mock(
annotation={'output.fastq': {'type': 'basic:file:', 'value': {'file': 'reads.fq'}},
'output.fasta': {'type': 'basic:file:', 'value': {'file': 'genome.fa'}}}
)
files_list = Data._files_dirs(data_mock, 'file', field_name="output.fastq")
self.assertEqual(files_list, ['reads.fq'])
files_list = Data._files_dirs(data_mock, 'file', field_name="fastq")
self.assertEqual(files_list, ['reads.fq'])
def test_add_output(self, data_mock):
data_mock.configure_mock(
output={
'fastq': {'file': 'reads.fq'},
'fasta': {'file': 'genome.fa'},
},
process_output_schema=[
{'type': 'basic:file:', 'name': 'fastq', 'label': 'FASTQ'},
{'type': 'basic:file:', 'name': 'fasta', 'label': 'FASTA'},
],
)
files_list = Data._files_dirs(data_mock, 'file', field_name="output.fastq")
self.assertEqual(files_list, ['reads.fq'])
files_list = Data._files_dirs(data_mock, 'file', field_name="fastq")
self.assertEqual(files_list, ['reads.fq'])
def test_add_output(self, data_mock):
data_mock.configure_mock(
annotation={
'output.fastq': {
'type': 'basic:file:',
'value': {
'file': 'reads.fq'
}
},
'output.fasta': {
'type': 'basic:file:',
'value': {
'file': 'genome.fa'
}
}
})
files_list = Data._files_dirs(data_mock,
'file',
field_name="output.fastq")
self.assertEqual(files_list, ['reads.fq'])
files_list = Data._files_dirs(data_mock, 'file', field_name="fastq")
self.assertEqual(files_list, ['reads.fq'])
