def test_update():
args = ['-f', 'test/data/notes.txt', '-t', 'Notes'] + base_args
opts = parse_args(args)
manage_pickle.run('update', opts)
args = ['-f', "%s/updated.csv" % tmpdir] + base_args
opts = parse_args(args)
manage_pickle.run('save', opts)
assert filecmp.cmp("%s/updated.csv" % tmpdir, 'test/data/exp_updated.csv')
def test_single_other_query():
args = ['-q', 'linear', '-t', 'Topology', '-o', "%s/query_o.csv" % tmpdir] + base_args
opts = parse_args(args)
manage_pickle.run('query', opts)
assert filecmp.cmp("%s/query_o.csv" % tmpdir, 'test/data/query_o.exp')
cleanup()
def test_file_acc_query():
args = ['-f', 'test/data/q.txt', '-o', "%s/query_f.csv" % tmpdir] + base_args
opts = parse_args(args)
manage_pickle.run('query', opts)
assert filecmp.cmp("%s/query_f.csv" % tmpdir, 'test/data/query_f.exp')
def test_single_acc_query():
args = ['-q', 'CP000356', '-o', "%s/query_s.csv" % tmpdir] + base_args
opts = parse_args(args)
manage_pickle.run('query', opts)
assert filecmp.cmp("%s/query_s.csv" % tmpdir, 'test/data/query_s.exp')
def test_save():
args = ['-f', "%s/test.csv" % tmpdir] + base_args
opts = parse_args(args)
manage_pickle.run('save', opts)
assert filecmp.cmp("%s/test.csv" % tmpdir, 'test/data/exp.csv')
def test_add():
args = ['-f', 'test/data/small_db.txt'] + base_args
opts = parse_args(args)
manage_pickle.run('add', opts)
assert os.path.exists("%s/resistome_testing.db" % tmpdir)
