def delete():
key = request.form['key']
my_bucket = get_bucket()
my_bucket.Object(key).delete()
flash('Fichier supprimé avec succès')
return redirect(url_for('files'))
def upload():
file = request.files['file']
my_bucket = get_bucket()
my_bucket.Object(file.filename).put(Body=file)
flash('Fichier téléchargé avec succès')
return redirect(url_for('files'))
def upload():
file = request.files['file']
if (file.filename == ''):
flash('No file selected')
if (file):
my_bucket = get_bucket()
my_bucket.Object(file.filename).put(Body=file)
flash('File uploaded successfully')
return redirect(url_for('files'))
def download():
key = request.form['key']
my_bucket = get_bucket()
file_obj = my_bucket.Object(key).get()
return Response(
file_obj['Body'].read(),
mimetype='text/plain',
headers={"Content-Disposition": "attachment;filename={}".format(key)})
def index():
if request.method == 'POST':
file = request.files['user_file']
my_bucket = get_bucket()
my_bucket.Object(file.filename).put(Body=file)
flash('File uploaded successfully')
return redirect(url_for('files'))
return render_template('index.html')
def delete_file():
try:
key = request.json['key']
my_bucket = get_bucket()
my_bucket.Object(key).delete()
return json.dumps(
Response_Message(True, "File deleted sucessfully.").__dict__)
except Exception as ex:
return json.dumps(
Response_Message(False, "Filed to delete the file.").__dict__)
def files():
addToRecipe = request.args.get('addToRecipe')
my_bucket = get_bucket()
summaries = my_bucket.objects.all()
components = normal_db_functions.all_components_names(database_address)
return render_template('files.html',
my_bucket=my_bucket,
files=summaries,
components=components,
atR=addToRecipe)
def delete_image():
"""Deletes an image off of S3"""
key = request.form['key']
my_bucket = get_bucket()
my_bucket.Object(key).delete()
flash(f'Photo deleted successfully!')
return redirect(url_for('files'))
def deleteComponentBucket():
ver = request.form['ver']
fileName = request.form['Fname']
if normal_db_functions.check_duplicate(database_address, fileName, ver):
url = normal_db_functions.get_URL(database_address, fileName, ver)
key = url[0][0].split("/")[-1]
my_bucket = get_bucket()
my_bucket.Object(key).delete()
normal_db_functions.delete_component(database_address, fileName, ver)
flash('File deleted successfully')
return redirect(url_for('files'))
def version():
component = request.form['component']
addToRecipe = request.form['atR']
my_bucket = get_bucket()
versions = normal_db_functions.lookup(database_address, component)
return render_template('versions.html',
my_bucket=my_bucket,
componentName=component,
versions=versions,
atR=addToRecipe)
def victor():
global msg
global key
my_bucket = get_bucket()
msg = get_queue_elem()
img_name = "Queue_empty.png" if msg is None else msg.body
key = img_name
img_file = my_bucket.Object(img_name)
img_file.url = get_url(img_file)
return render_template('victor.html', img_file=img_file)
def files():
my_bucket = get_bucket()
summaries = my_bucket.objects.all()
image_urls = list()
s3 = _get_s3_client()
for summary in summaries:
image_urls.append(get_presigned_url(s3, summary.key))
return render_template('files.html',
my_bucket=my_bucket,
files=zip(summaries, image_urls))
def upload_image():
"""Upload an image to S3"""
#the dict will contain a key 'file' which is same on input form -- this is a FileStorage object from Werkzeug
file = request.files['file']
my_bucket = get_bucket()
my_bucket.Object(file.filename).put(Body=file)
# get_presigned_url('file')
flash(f'Photo uploaded successfully!')
return redirect(url_for('files'))
def upload():
file = request.files['file']
my_bucket = get_bucket()
prefix = session['username'] + '/'
path = prefix + file.filename
my_bucket.Object(path).put(Body=file)
flash(
'File uploaded successfully. You should receive a summary in your inbox shortly.'
)
return redirect(url_for('files'))
def post(self):
key = request.form['key']
my_bucket = get_bucket()
my_bucket.Object(key).delete()
flash('File deleted successfully')
event_log = LogModel('delete_event', key)
try:
event_log.save_to_db()
except:
return {"message": "An error occurred while logging."}, 500
return redirect(url_for('files'))
def create():
if request.method == 'POST':
title = request.form['title']
description = request.form['description']
file = request.files['file']
filename = secure_filename(file.filename)
species = request.form['species']
condition = request.form['condition']
timept = request.form['timept']
error = None
if not title:
error = 'Title is required.'
if error is not None:
flash(error)
if file: # if there's a file save it
# save info in SQL database
db = get_db()
db.execute(
'INSERT INTO post (title, author_id, description, file_name, species, condition, timept)'
' VALUES (?, ?, ?, ?, ?, ?, ?)',
(title, g.user['id'], description, filename, species,
condition, timept))
db.commit()
postid = str(
db.execute(
'SELECT seq from sqlite_sequence WHERE name = "post"').
fetchone()['seq'])
# save file on Amazon S3
my_bucket = get_bucket()
my_bucket.Object(file.filename).put(Body=file)
flash("File uploaded successfully! Entries added to index!")
# make Whoosh index for file
bucket = "proteomics-db-test"
file_df = format_file(get_df(bucket, filename))
file_dict = make_dict(file_df)
num_proteins = len(file_df)
# not a great way to pass condition like this, because any
# modification to post will not be accepted by Whoosh
create_index(postid, condition, file_dict, create_schema(),
num_proteins)
return redirect(url_for('posts.index'))
return render_template('posts/create.html')
def index():
"""
Render index page
"""
# get bucket summary from bucket
my_bucket = get_bucket()
summaries = my_bucket.objects.all()
# get image labels from lambda function
res = requests.get("https://0f3kzkdn93.execute-api.us-east-2.amazonaws.com/prod")
labels = res.json()['body']
# render files.html
return render_template('index.html', my_bucket=my_bucket, files=summaries, labels=labels)
def delete():
"""
Delete image
"""
# get key from hidden value
key = request.form['key']
# delete file in bucket using key
my_bucket = get_bucket()
my_bucket.Object(key).delete()
# flash message
flash('File deleted successfully')
return redirect(url_for('index'))
def download():
key = request.form['key']
if('.enc' in key):
source = os.path.join(app_root,'uploads')
loc0 = os.path.join(source,key[:-4])
return send_file(loc0, as_attachment=True)
elif('.enc' not in key):
my_bucket = get_bucket()
file_obj = my_bucket.Object(key).get()
return Response(
file_obj['Body'].read(),
mimetype='text/plain',
headers={"Content-Disposition": "attachment;filename={}".format(key)}
)
def download():
from app import current_user
user = User.query.get_or_404(current_user.id)
key = request.form['key']
if('.enc' == key[-4:]):
user.download = key
db.session.commit()
return redirect(url_for('auth.download1'))
elif('.enc' != key[-4:]):
my_bucket = get_bucket()
file_obj = my_bucket.Object(key).get()
return Response(
file_obj['Body'].read(),
mimetype='text/plain',
headers={"Content-Disposition": "attachment;filename={}".format(key)}
)
def upload():
file = request.files['file']
max_size = 640, 480
in_mem_file = BytesIO()
img = Image.open(file)
img.thumbnail(max_size, Image.ANTIALIAS)
img.save(in_mem_file, format=img.format)
my_bucket = get_bucket()
my_bucket.Object("folder/" +
file.filename).put(Body=in_mem_file.getvalue())
flash('File uploaded successfully')
return redirect(url_for('files'))
def download():
"""
Download image
"""
# get key from hidden value
key = request.form['key']
# get file in bucket using key
my_bucket = get_bucket()
file_obj = my_bucket.Object(key).get()
# download file
return Response(
file_obj['Body'].read(),
mimetype='text/plain',
headers={'content-Disposition': f'attachment;filename={key}'}
)
def all_files():
my_bucket = get_bucket()
summaries = my_bucket.objects.all()
payload = []
data = {}
# json.dumps(summaries.__dict__)
for summary in summaries:
file = summary.key
lastmodified = datetimeformat(summary.last_modified)
filetype = file_type(summary.key)
data['file'] = file
data['lastmodified'] = lastmodified
data['filetype'] = filetype
payload.append(data)
return jsonify(payload)
def delete(id):
# remove from SQL database
get_post(id)
db = get_db()
db.execute('DELETE FROM post WHERE id = ?', (id, ))
db.commit()
key = request.form['key']
my_bucket = get_bucket()
my_bucket.Object(key).delete()
# remove file contents from Whoosh index
remove_doc(str(id))
flash('File deleted successfully! Contents removed from index!')
return redirect(url_for('posts.index'))
def post(self):
key = request.form['key']
my_bucket = get_bucket()
file_obj = my_bucket.Object(key).get()
event_log = LogModel('download_event', key)
try:
event_log.save_to_db()
except:
return {"message": "An error occurred while logging."}, 500
return Response(file_obj['Body'].read(),
mimetype='text/plain',
headers={
"Content-Disposition":
"attachment;filename={}".format(key)
})
def post(self):
file = request.files['file']
files_list = get_all_objects_from_bucket()
if file.filename in files_list:
flash('File upload cannot happen due to duplicate file name')
return redirect(url_for('files'))
my_bucket = get_bucket()
my_bucket.Object(file.filename).put(Body=file)
flash('File uploaded successfully')
event_log = LogModel('upload_event', file.filename)
try:
event_log.save_to_db()
except:
return {"message": "An error occurred while logging."}, 500
return redirect(url_for('files'))
def getDogBreedFromUrl(id):
print(id)
url = 'https://s3.amazonaws.com/' + S3_BUCKET + '/' + id
params = {'imagePath': url}
print(params)
#apiUrl = 'http://0.0.0.0:8080/getDogBreed'
apiUrl = 'http://172.104.212.211:8000/getDogBreed'
r = requests.post(url=apiUrl, params=params)
data = r.json()
print(data)
my_bucket = get_bucket()
add_tags_to_object(id, url, data['type'], data['breed'])
objects = get_detail_bucket_list()
return render_template('files.html', my_bucket=my_bucket, files=objects)
def retrieve():
ver = request.args.get('ver')
fileName = request.args.get('Fname')
connection = normal_db_functions.create_connection(database_address)
if normal_db_functions.check_duplicate(database_address, fileName, ver):
url = normal_db_functions.get_URL(database_address, fileName, ver)
key = url[0][0].split("/")[-1]
print(key)
my_bucket = get_bucket()
file_obj = my_bucket.Object(key).get()
return Response(file_obj['Body'].read(),
mimetype='text/plain',
headers={
"Content-Disposition":
"attachment;filename={}".format(key)
})
else:
return jsonify("DOESN'T EXIST"), 404
def enc_upload():
from app import current_user
user = User.query.get_or_404(current_user.id)
source = os.path.join(app_root, 'uploads')
if (not os.path.exists(source)):
os.makedirs(source)
target = os.path.join(app_root, 'encrypted')
if (not os.path.exists(target)):
os.makedirs(target)
file = request.files['file']
if (file.filename == ''):
flash('No file selected')
if (file):
loc0 = os.path.join(source, file.filename)
file.save(loc0)
loc = os.path.join(target, file.filename + ".enc")
with open(loc0, 'rb') as fo:
plaintext = fo.read()
res = ''.join(
random.choices(string.ascii_uppercase + string.digits, k=20))
res1 = bytes(res, 'utf-8')
key = hashlib.sha256(res1).digest()
enc = encrypt(plaintext, key)
with open(loc, 'wb') as fo:
fo.write(enc)
my_bucket = get_bucket()
my_bucket.Object(file.filename + ".enc").put(Body=open(loc, 'rb'))
source1 = os.path.join(app_root, 'keys')
if (not os.path.exists(source1)):
os.makedirs(source1)
source2 = os.path.join(source1, file.filename + ".enc key.txt")
keydir = eval(user.keydir)
keydir[file.filename + ".enc"] = key
user.keydir = str(keydir)
db.session.commit()
with open(source2, "w") as file1:
file1.write(res)
file1.close()
flash('File uploaded successfully')
return send_file(source2, as_attachment=True)
return redirect(url_for('files'))
def upload():
"""
Upload image
"""
try:
file = request.files['file']
except:
pass
else:
# check file extension
if validate_extension(file.filename):
# upload user file to bucket
my_bucket = get_bucket()
my_bucket.Object(file.filename).put(Body=file)
# flash message
flash('File uploaded successfully')
else:
flash('Only .jpg, .jpeg and .png are allowed')
finally:
return redirect(url_for('index'))