def test_convert_multi_hsps(self):
blast_outputs = []
with open(os.path.join(fwd, 'test_data', 'web_multi_hit.xml'),
'r') as f:
for r in NCBIXML.parse(f):
blast_outputs.append(r)
encoded = [convert_classes.blasttodict(i) for i in blast_outputs]
encoded_json = json.dumps(encoded)
encoded = json.loads(encoded_json)
decoded = [convert_classes.blastfromdict(i) for i in encoded]
for orig_r, rec_r in zip(blast_outputs, decoded):
tc.recrusive_compare(orig_r, rec_r)
def test_convert_simple(self):
blast_outputs = []
with open(
os.path.join(fwd, 'test_data',
'blast_parse_hits_txt_standalone.txt'), 'r') as f:
for r in blast_parse_txt(f):
blast_outputs.append(r)
encoded_original = [
convert_classes.blasttodict(i) for i in blast_outputs
]
encoded_json = json.dumps(encoded_original)
encoded = json.loads(encoded_json)
decoded = [convert_classes.blastfromdict(i) for i in encoded]
for orig_r, rec_r in zip(blast_outputs, decoded):
tc.recrusive_compare(orig_r, rec_r)