def test_preprocessSeq_5(self):
'''Test preprocess_seq() on RNA alphabet'''
seqrec = SeqRecord(Seq('GAUUACA', SingleLetterAlphabet()))
target = ms.preprocess_seq(seqrec, IUPAC.IUPACUnambiguousRNA())
expected = 'GAUUACA'
self.assertEqual(str(target), expected)
def test_preprocessSeq_6(self):
'''Test preprocess_seq() on RNA alphabet'''
seqrec = SeqRecord(Seq('KHIL', ContextualSecondaryStructure()))
target = ms.preprocess_seq(seqrec, IUPAC.IUPACUnambiguousRNA())
expected = 'KHIL'
self.assertEqual(str(target), expected)
def test_preprocessSeq_4(self):
'''Test preprocess_seq() on DNA alphabet'''
seqrec = SeqRecord(Seq('GATTACA', IUPAC.IUPACUnambiguousDNA()))
target = ms.preprocess_seq(seqrec, IUPAC.IUPACUnambiguousDNA())
expected = 'GATTACA'
self.assertEqual(str(target), expected)