def cat(f):
'''Main driver to solve this problem.'''
return num_perfect_matching(ro.read_fafsa(f))
def motz(f):
'''Main driver to solve this problem.'''
return num_noncrossing_matching(ro.read_fafsa(f))
def mmch_dp(f):
'''Main driver to solve this problem.'''
return num_max_matching_dp(ro.read_fafsa(f))
import rosalind.rosutil as ro
def failure_array(s):
n = len(s)
k, i, p = 2, 0, [0] * (n + 1)
p[0] = -1
print 'n', n
while k <= n:
print 'k', k, 'i', i, 's[k-1]', s[k - 1]
if s[k - 1] == s[i]:
print 'Extend match to', s[k - i - 1:k], s[:i + 1]
i += 1
p[k] = i
k += 1
else:
if i > 0:
print 'Back-track i from', i, 'to', p[i], 'match', s[:p[i]]
i = p[i] # Back-track to previous possible match
else:
print 'At beginning'
k += 1 # Beginning of string, p[k] already initialized to 0 above
return p[1:]
kmp = lambda f: ' '.join(repr(x) for x in failure_array(ro.read_fafsa(f)))
if __name__ == "__main__":
# print kmp('rosalind_kmp.dat')
print kmp('rosalind_kmp_sample.dat')
# open('rosalind_kmp.out', 'wb').write(kmp('rosalind_kmp.dat') + '\n')