def test_gather_sources_and_dependencies():
from tests.dependency_example import some_func
main, sources, deps = gather_sources_and_dependencies(
some_func.__globals__)
assert isinstance(main, Source)
assert isinstance(sources, set)
assert isinstance(deps, set)
assert main == Source.create(
os.path.join(TEST_DIRECTORY, "dependency_example.py"))
expected_sources = {
Source.create(os.path.join(TEST_DIRECTORY, "__init__.py")),
Source.create(os.path.join(TEST_DIRECTORY, "dependency_example.py")),
Source.create(os.path.join(TEST_DIRECTORY, "foo", "__init__.py")),
Source.create(os.path.join(TEST_DIRECTORY, "foo", "bar.py")),
}
assert sources == expected_sources
assert PackageDependency.create(pytest) in deps
assert PackageDependency.create(mock) in deps
# If numpy is installed on the test system it will automatically be added
# as an additional dependency, so test for that:
if opt.has_numpy:
assert PackageDependency.create(opt.np) in deps
assert len(deps) == 3
else:
assert len(deps) == 2
def test_gather_sources_and_dependencies(discover_sources, expected_sources):
from tests.dependency_example import some_func
from sacred import SETTINGS
SETTINGS.DISCOVER_SOURCES = discover_sources
main, sources, deps = gather_sources_and_dependencies(
some_func.__globals__, save_git_info=False)
assert isinstance(main, Source)
assert isinstance(sources, set)
assert isinstance(deps, set)
assert main == Source.create(
os.path.join(TEST_DIRECTORY, "dependency_example.py"))
assert sources == expected_sources
assert PackageDependency.create(pytest) in deps
assert PackageDependency.create(mock) in deps
# If numpy is installed on the test system it will automatically be added
# as an additional dependency, so test for that:
if opt.has_numpy:
assert PackageDependency.create(opt.np) in deps
assert len(deps) == 3
else:
assert len(deps) == 2
# Reset to default to prevent side-effects
SETTINGS.DISCOVER_SOURCES = "imported"
def add_package_dependency(self, package_name, version):
"""
Add a package to the list of dependencies.
:param package_name: The name of the package dependency
:type package_name: str
:param version: The (minimum) version of the package
:type version: str
"""
if not PEP440_VERSION_PATTERN.match(version):
raise ValueError('Invalid Version: "{}"'.format(version))
self.dependencies.add(PackageDependency(package_name, version))
def test_gather_sources_and_dependencies():
from tests.dependency_example import some_func
sources, deps = gather_sources_and_dependencies(some_func.__globals__)
assert isinstance(sources, set)
assert isinstance(deps, set)
expected_sources = {
Source.create('tests/__init__.py'),
Source.create('tests/dependency_example.py'),
Source.create('tests/foo/__init__.py'),
Source.create('tests/foo/bar.py')
}
assert sources == expected_sources
assert PackageDependency.create(pytest) in deps
assert PackageDependency.create(mock) in deps
# If numpy is installed on the test system it will automatically be added
# as an additional dependency, so test for that:
if opt.has_numpy:
assert PackageDependency.create(opt.np) in deps
assert len(deps) == 3
else:
assert len(deps) == 2
def test_package_dependency_fill_non_missing_version():
pd = PackageDependency("mymod", "1.2.3rc4")
pd.fill_missing_version()
assert pd.version == "1.2.3rc4"
def test_package_dependency_create_no_version():
mod = mock.Mock(spec=[], __name__="testmod")
pd = PackageDependency.create(mod)
assert pd.name == "testmod"
assert pd.version is None
def test_package_dependency_get_version_heuristic_VERSION(version, expected):
mod = mock.Mock(spec=[], VERSION=version)
assert PackageDependency.get_version_heuristic(mod) == expected
import datetime
import os
import numba
from numba.core.errors import NumbaWarning
import warnings
warnings.simplefilter('ignore', category=NumbaWarning)
import SpringBox
from SpringBox.integrator import integrate_one_timestep
from SpringBox.activation import *
from SpringBox.post_run_hooks import post_run_hooks
from SpringBox.measurements import do_measurements, do_one_timestep_correlation_measurement
ex = Experiment('SpringBox')
#ex.observers.append(MongoObserver.create())
ex.observers.append(FileStorageObserver.create(f'data/'))
ex.dependencies.add(PackageDependency("SpringBox", SpringBox.__version__))
@ex.config
def cfg():
## Simulation parameters
sweep_experiment = False
run_id = 0
savefreq_fig = 3
savefreq_data_dump = 500
# Speeds up the computation somewhat, but incurs an error due to oversmoothing of fluids (which could however be somewhat physical)
use_interpolated_fluid_velocities = False
dt = .05
T = 10
particle_density = 310
MAKE_VIDEO = True
def test_package_dependency_repr():
pd = PackageDependency("pytest", "12.4")
assert repr(pd) == "<PackageDependency: pytest=12.4>"
def test_package_dependency_get_version_heuristic_VERSION(version, expected):
mod = mock.Mock(spec=[], VERSION=version)
assert PackageDependency.get_version_heuristic(mod) == expected
def test_package_dependency_fill_missing_version():
pd = PackageDependency('pytest', None)
pd.fill_missing_version()
assert pd.version == pytest.__version__
def test_package_dependency_fill_missing_version_unknown():
pd = PackageDependency('mymod', None)
pd.fill_missing_version()
assert pd.version == '<unknown>'
def test_package_dependency_fill_non_missing_version():
pd = PackageDependency('mymod', '1.2.3rc4')
pd.fill_missing_version()
assert pd.version == '1.2.3rc4'
def test_package_dependency_to_tuple():
mod = mock.Mock(spec=[], __version__='3.2.1', __name__='testmod')
pd = PackageDependency.create(mod)
assert pd.to_tuple() == ('testmod', '3.2.1')
def test_package_dependency_repr():
pd = PackageDependency('pytest', '12.4')
assert repr(pd) == '<PackageDependency: pytest=12.4>'
def test_package_dependency_fill_missing_version_unknown():
pd = PackageDependency("mymod", None)
pd.fill_missing_version()
assert pd.version == None
def test_package_dependency_fill_missing_version():
pd = PackageDependency("pytest", None)
pd.fill_missing_version()
assert pd.version == pytest.__version__
def test_package_dependency_create():
mod = mock.Mock(spec=[], __version__='0.1.2', __name__='testmod')
pd = PackageDependency.create(mod)
assert pd.name == 'testmod'
assert pd.version == '0.1.2'
def test_add_package_dependency(ing):
ing.add_package_dependency('django', '1.8.2')
assert PackageDependency('django', '1.8.2') in ing.dependencies
def test_add_package_dependency(ing):
ing.add_package_dependency("django", "1.8.2")
assert PackageDependency("django", "1.8.2") in ing.dependencies