def convert_file(filename, arguments):
"""Parse in a Bio-PEPA file, translate to SBML and create an
SBML file which should be the translated Bio-PEPA model.
"""
model_file = open(filename, "r")
parse_result = biopepa_parser.parse_model_file_exit_on_error(model_file)
model_file.close()
document = translate_biopepa_model(parse_result)
sbml_ast.output_to_sbml_file(filename, arguments, document)
def translate_file(filename, arguments):
"""Translate a facile file into sbml"""
model_file = open(filename, "r")
try:
facile_model = facile_parser.parse_model_file(model_file)
except parcon.ParseException as parse_except:
print parse_except
sys.exit(1)
model_file.close()
document = translate_facile_model(facile_model, arguments)
if not arguments.no_static_analysis:
static_analyser_sbml.analyse_document(document, arguments)
sbml_ast.output_to_sbml_file(filename, arguments, document)