def readbt7(self,myfile):
#get first line
myFlag=True
#self.metadata={}
self.header=[]
returnline=['']
while myFlag:
tokenized=get_tokenized_line(myfile,returnline=returnline)
#print tokenized
if tokenized==[]:
tokenized=['']
if tokenized[0].lower()=="#Date".lower():
pass
if tokenized[0].lower()=="#Date".lower():
date_tokens=tokenized[1].split('-')
self.metadata['timestamp']={}
month=int(date_tokens[1].strip("\'"))
day=int(date_tokens[2].strip("\'"))
year=int(date_tokens[0].strip("\'"))
stime=tokenized[2].strip("\'")
stimetok=stime.split(':')
hour=int(stimetok[0])
minute=int(stimetok[1])
second=int(stimetok[2])
self.metadata['timestamp']['month']=int(date_tokens[1].strip("\'"))
self.metadata['timestamp']['day']=int(date_tokens[2].strip("\'"))
self.metadata['timestamp']['year']=int(date_tokens[0].strip("\'"))
self.metadata['timestamp']['time']=tokenized[2].strip("\'")
elif tokenized[0].lower()=="#Epoch".lower():
#timeobj=date.datatetime(year,month,day,hour,minute,second)
Epoch=float(tokenized[1])
#timeobj=mx.DateTime.DateTimeFromTicks(ticks=Epoch) #what I originally used
timeobj=datetime.datetime.fromtimestamp(Epoch)
#print 'timeobj ',timeobj
#print 'Epoch ', Epoch
self.metadata['timestamp']['epoch']=Epoch#timeobj
#print self.metadata['timestamp']
elif tokenized[0].lower()=="#InstrName".lower():
self.metadata['file_info']['instrument']=tokenized[1].lower()
elif tokenized[0].lower()=="#ExptID".lower():
self.metadata['file_info']['experiment_id']=tokenized[1].lower()
elif tokenized[0].lower()=="#Fixed".lower():
self.metadata['file_info']['fixed_devices']=tokenized[1:]
elif tokenized[0].lower()=="#Filename".lower():
self.metadata['file_info']['filename']=tokenized[1]
#print 'filename ', tokenized[1]
pattern = re.compile('^(?P<base>[^.]*?)(?P<seq>[0-9]*)(?P<ext>[.].*)?$')
match = pattern.match(tokenized[1]+'.bt7')
dict((a,match.group(a)+"") for a in ['base','seq','ext'])
#print 'filebase ',match.group('base')
self.metadata['file_info']['filebase']=match.group('base')
self.metadata['file_info']['fileseq_number']=match.group('seq')
elif tokenized[0].lower()=="#Comment".lower():
mycomment=''
for i in range(1,len(tokenized)):
mycomment=mycomment+' '+tokenized[i]
self.metadata['file_info']['comment']=mycomment
elif tokenized[0].lower()=="#MonoSpacing".lower():
self.metadata['dspacing']['monochromator_dspacing']=float(tokenized[1])
elif tokenized[0].lower()=="#AnaSpacing".lower():
self.metadata['dspacing']['analyzer_dspacing']=float(tokenized[1])
elif tokenized[0].lower()=="#TemperatureUnits".lower():
self.metadata['temperature_info']['units']=tokenized[1]
elif tokenized[0].lower()=="#Orient".lower():
self.metadata['orient1']['h']=float(tokenized[1])
self.metadata['orient1']['k']=float(tokenized[2])
self.metadata['orient1']['l']=float(tokenized[3])
self.metadata['orient2']['h']=float(tokenized[4])
self.metadata['orient2']['k']=float(tokenized[5])
self.metadata['orient2']['l']=float(tokenized[6])
elif tokenized[0].lower()=="#Lattice".lower():
self.metadata['lattice']['a']=float(tokenized[1])
self.metadata['lattice']['b']=float(tokenized[2])
self.metadata['lattice']['c']=float(tokenized[3])
self.metadata['lattice']['alpha']=float(tokenized[4])
self.metadata['lattice']['beta']=float(tokenized[5])
self.metadata['lattice']['gamma']=float(tokenized[6])
elif tokenized[0].lower()=="#AnalyzerDetectorMode".lower():
self.metadata['count_info']['analyzerdetectormode']=tokenized[2].lower()
elif tokenized[0].lower()=="#Reference".lower():
self.metadata['count_info']['count_type']=tokenized[2].lower()
elif tokenized[0].lower()=="#Signal".lower():
self.metadata['count_info']['signal']=tokenized[2].lower()
elif tokenized[0].lower()=="#AnalyzerDetectorDevicesOfInterest".lower():
self.metadata['count_info']['AnalyzerDetectorDevicesOfInterest'.lower()]=tokenized[1:]
elif tokenized[0].lower()=="#AnalyzerDDGroup".lower():
self.metadata['count_info']['AnalyzerDDGroup'.lower()]=tokenized[1:]
elif tokenized[0].lower()=="#AnalyzerDoorDetectorGroup".lower():
self.metadata['count_info']['AnalyzerDoorDetectorGroup'.lower()]=tokenized[1:]
elif tokenized[0].lower()=="#AnalyzerSDGroup".lower():
self.metadata['count_info']['AnalyzerSDGroup'.lower()]=tokenized[1:]
elif tokenized[0].lower()=="#AnalyzerPSDGroup".lower():
self.metadata['count_info']['AnalyzerPSDGroup'.lower()]=tokenized[1:]
elif tokenized[0].lower()=="#AnalyzerFocusMode".lower():
self.metadata['count_info']['analyzerfocusmode'.lower()]=tokenized[1]
elif tokenized[0].lower()=="#MonoVertiFocus".lower():
self.metadata['count_info']['monovertifocus'.lower()]=tokenized[1]
elif tokenized[0].lower()=="#MonoHorizFocus".lower():
self.metadata['count_info']['monohorizfocus'.lower()]=tokenized[1]
elif tokenized[0].lower()=="#FixedE".lower():
try:
self.metadata['energy_info']['efixed'.lower()]=tokenized[1]
except IndexError:
pass
try:
self.metadata['energy_info']['ef'.lower()]=float(tokenized[2])
except IndexError:
pass
elif tokenized[0].lower()=="#ScanDescr".lower():
scanstr=''
for i in range(1,len(tokenized)):
scanstr=scanstr+tokenized[i]+' '
self.metadata['file_info']['scan_description']=scanstr
#print 'scanstr',scanstr
myparser=scanparser.scanparser(scanstr)
self.metadata['count_info']['varying']=myparser.get_varying()
self.metadata['count_info']['ranges']=myparser.ranges
#print 'parsed'
#if self.metadata['file_info']['filebase']!='fpx':
# self.additional_metadata['parsed_scandescription']=self.parse_scan(scanstr)
#CAN'T SEEM TO PARSE fpx files, but if the filename is broken as in the last cycle, then how do I know?
#Better soln is to fix parser
#print self.metadata['scan_description']['range']
else:
currfield=tokenized[0].lower().lower().strip('#')
self.additional_metadata[currfield]=(tokenized[1:])
if tokenized[0]!='#Columns'.lower():
self.header.append(returnline[0])
if tokenized[0]=='#Columns'.lower():
self.get_columnmetadatas_bt7(tokenized)
count = 0
try:
lines=int(self.lines)
except:
lines=N.Inf
while 1:
lineStr = myfile.readline()
if not(lineStr):
break
if lineStr[0] != "#":
if count>=lines:
break
strippedLine=lineStr.rstrip()
tokenized=strippedLine.split()
for i in range(len(tokenized)):
field=self.columnlist[i]
try:
if field.lower()=='time' and self.timestamp_flag==False:
#timedelta=mx.DateTime.DateTimeDelta(0,0,0,float(tokenized[i])) #orig
#self.columndict['timestamp'].append((timeobj+timedelta).ticks()) #orig
#timestamp_flag is True if the timestamp is already given in the file
timedelta=datetime.timedelta(seconds=float(tokenized[i]))
self.columndict['timestamp'].append(mktime((timeobj+timedelta).timetuple()))
timeobj=timeobj+timedelta
self.columndict[field].append(float(tokenized[i]))
except ValueError:
self.columndict[field].append((tokenized[i]))
count=count+1
myFlag=False
if len(self.columndict[self.columnlist[0]])==0:
self.columndict={}
self.columnlist=[]
#This is a drastic step, but if the file is empty, then no point in even recording the placeholders
#print self.columndict['Qx']
#print self.columnlist
return
def readbt7(self,myfile):
#get first line
myFlag=True
#self.metadata={}
self.header=[]
returnline=['']
while myFlag:
tokenized=get_tokenized_line(myfile,returnline=returnline)
#print tokenized
if tokenized==[]:
tokenized=['']
if tokenized[0].lower()=="#Date".lower():
pass
elif tokenized[0].lower()=="#Date".lower():
#time.strptime("2007-11-03 22:33:22 EDT", "%Y-%m-%d %H:%M:%S %Z")
date_tokens=tokenized[1].split('-')
self.metadata['timestamp']={}
month=int(date_tokens[1].strip("\'"))
day=int(date_tokens[2].strip("\'"))
year=int(date_tokens[0].strip("\'"))
stime=tokenized[2].strip("\'")
stimetok=stime.split(':')
hour=int(stimetok[0])
minute=int(stimetok[1])
second=int(stimetok[2])
self.metadata['timestamp']['month']=int(date_tokens[1].strip("\'"))
self.metadata['timestamp']['day']=int(date_tokens[2].strip("\'"))
self.metadata['timestamp']['year']=int(date_tokens[0].strip("\'"))
self.metadata['timestamp']['time']=tokenized[2].strip("\'")
elif tokenized[0].lower()=="#Epoch".lower():
#timeobj=date.datatetime(year,month,day,hour,minute,second)
Epoch=float(tokenized[1])
#timeobj=mx.DateTime.DateTimeFromTicks(ticks=Epoch) #what I originally used
timeobj=datetime.datetime.fromtimestamp(Epoch)
#print 'timeobj ',timeobj
#print 'Epoch ', Epoch
self.metadata.epoch=Epoch#timeobj
#print self.metadata['timestamp']
elif tokenized[0].lower()=="#InstrName".lower():
self.metadata.instrument=tokenized[1].lower()
elif tokenized[0].lower()=="#ExptID".lower():
self.metadata.experiment_id=tokenized[1].lower()
elif tokenized[0].lower()=="#Fixed".lower():
self.metadata.fixed_devices=tokenized[1:]
elif tokenized[0].lower()=="#Filename".lower():
self.metadata.filename=tokenized[1]
#print 'filename ', tokenized[1]
pattern = re.compile('^(?P<base>[^.]*?)(?P<seq>[0-9]*)(?P<ext>[.].*)?$')
match = pattern.match(tokenized[1]+'.bt7')
dict((a,match.group(a)+"") for a in ['base','seq','ext'])
#print 'filebase ',match.group('base')
self.metadata.filebase=match.group('base')
self.metadata.fileseq_number=match.group('seq')
elif tokenized[0].lower()=="#Comment".lower():
mycomment=''
for i in range(1,len(tokenized)):
mycomment=mycomment+' '+tokenized[i]
self.metadata.comment=mycomment
elif tokenized[0].lower()=="#MonoSpacing".lower():
self.metadata.monochromator_dspacing=float(tokenized[1])
elif tokenized[0].lower()=="#AnaSpacing".lower():
self.metadata.analyzer_dspacing=float(tokenized[1])
elif tokenized[0].lower()=="#TemperatureUnits".lower():
self.metadata.temperature_units=tokenized[1]
elif tokenized[0].lower()=="#Orient".lower():
h1=float(tokenized[1])
k1=float(tokenized[2])
l1=float(tokenized[3])
h2=float(tokenized[4])
k2=float(tokenized[5])
l2=float(tokenized[6])
self.metadata.orientation=Orientation([h1,k1,l1],[h2,k2,l2])
elif tokenized[0].lower()=="#Lattice".lower():
a=float(tokenized[1])
b=float(tokenized[2])
c=float(tokenized[3])
alpha=float(tokenized[4])
beta=float(tokenized[5])
gamma=float(tokenized[6])
self.metadata.lattice=Lattice(a,b,c,alpha,beta,gamma)
elif tokenized[0].lower()=="#AnalyzerDetectorMode".lower():
self.metadata.analyzerdetectormode=tokenized[2].lower()
elif tokenized[0].lower()=="#Reference".lower():
self.metadata.count_type=tokenized[2].lower()
elif tokenized[0].lower()=="#Signal".lower():
self.metadata.signal=tokenized[2].lower()
elif tokenized[0].lower()=="#AnalyzerDetectorDevicesOfInterest".lower():
self.metadata.analyzerdetectordevicesofinterest=tokenized[1:]
elif tokenized[0].lower()=="#AnalyzerDDGroup".lower():
self.metadata.analyzerddgroup=tokenized[1:]
elif tokenized[0].lower()=="#AnalyzerDoorDetectorGroup".lower():
self.metadata.analyzerdoordetectorgroup=tokenized[1:]
elif tokenized[0].lower()=="#AnalyzerSDGroup".lower():
self.metadata.analyzersdgroup=tokenized[1:]
elif tokenized[0].lower()=="#AnalyzerPSDGroup".lower():
self.metadata.analyzerpsdgroup=tokenized[1:]
elif tokenized[0].lower()=="#AnalyzerFocusMode".lower():
self.metadata.analyzerfocusmode=tokenized[1]
elif tokenized[0].lower()=="#MonoVertiFocus".lower():
self.metadata.monovertifocus=tokenized[1]
elif tokenized[0].lower()=="#MonoHorizFocus".lower():
self.metadata.monohorizfocus=tokenized[1]
elif tokenized[0].lower()=="#FixedE".lower():
try:
self.metadata.efixed=tokenized[1]
except IndexError:
pass
try:
self.metadata.ef=float(tokenized[2])
except IndexError:
pass
elif tokenized[0].lower()=="#ScanDescr".lower():
scanstr=''
for i in range(1,len(tokenized)):
scanstr=scanstr+tokenized[i]+' '
self.metadata.scan_description=scanstr
#print 'scanstr',scanstr
myparser=scanparser.scanparser(scanstr)
self.metadata.varying=myparser.get_varying()
self.metadata.ranges=myparser.ranges
#print 'parsed'
#if self.metadata['file_info']['filebase']!='fpx':
# self.additional_metadata['parsed_scandescription']=self.parse_scan(scanstr)
#CAN'T SEEM TO PARSE fpx files, but if the filename is broken as in the last cycle, then how do I know?
#Better soln is to fix parser
#print self.metadata['scan_description']['range']
else:
currfield=tokenized[0].lower().lower().strip('#')
setattr(self.metadata,currfield,tokenized[1:])
if tokenized[0]!='#Columns'.lower():
self.header.append(returnline[0])
if tokenized[0]=='#Columns'.lower():
self.get_columnmetadatas_bt7(tokenized)
count = 0
try:
lines=int(self.lines)
except:
lines=N.Inf
while 1:
lineStr = myfile.readline()
if not(lineStr):
break
if lineStr[0] != "#":
if count>=lines:
break
strippedLine=lineStr.rstrip()
tokenized=strippedLine.split()
#for field in self.data.__dict__.keys():
for i in range(len(tokenized)):
field=self.columnlist[i]
try:
if field.lower()=='time' and self.timestamp_flag==False:
#timedelta=mx.DateTime.DateTimeDelta(0,0,0,float(tokenized[i])) #orig
#self.columndict['timestamp'].append((timeobj+timedelta).ticks()) #orig
#timestamp_flag is True if the timestamp is already given in the file
timedelta=datetime.timedelta(seconds=float(tokenized[i]))
self.data.timestamp.append(mktime((timeobj+timedelta).timetuple()))
timeobj=timeobj+timedelta
self.data[field].append(float(tokenized[i]))
except ValueError:
self.data[field].append((tokenized[i]))
count=count+1
myFlag=False
return
def readbt7(self, myfile):
#get first line
myFlag = True
#self.metadata={}
self.header = []
returnline = ['']
while myFlag:
tokenized = get_tokenized_line(myfile, returnline=returnline)
#print tokenized
if tokenized == []:
tokenized = ['']
if tokenized[0].lower() == "#Date".lower():
pass
if tokenized[0].lower() == "#Date".lower():
date_tokens = tokenized[1].split('-')
self.metadata['timestamp'] = {}
month = int(date_tokens[1].strip("\'"))
day = int(date_tokens[2].strip("\'"))
year = int(date_tokens[0].strip("\'"))
stime = tokenized[2].strip("\'")
stimetok = stime.split(':')
hour = int(stimetok[0])
minute = int(stimetok[1])
second = int(stimetok[2])
self.metadata['timestamp']['month'] = int(
date_tokens[1].strip("\'"))
self.metadata['timestamp']['day'] = int(
date_tokens[2].strip("\'"))
self.metadata['timestamp']['year'] = int(
date_tokens[0].strip("\'"))
self.metadata['timestamp']['time'] = tokenized[2].strip("\'")
elif tokenized[0].lower() == "#Epoch".lower():
#timeobj=date.datatetime(year,month,day,hour,minute,second)
Epoch = float(tokenized[1])
#timeobj=mx.DateTime.DateTimeFromTicks(ticks=Epoch) #what I originally used
timeobj = datetime.datetime.fromtimestamp(Epoch)
#print 'timeobj ',timeobj
#print 'Epoch ', Epoch
self.metadata['timestamp']['epoch'] = Epoch #timeobj
#print self.metadata['timestamp']
elif tokenized[0].lower() == "#InstrName".lower():
self.metadata['file_info']['instrument'] = tokenized[1].lower()
elif tokenized[0].lower() == "#ExptID".lower():
self.metadata['file_info']['experiment_id'] = tokenized[
1].lower()
elif tokenized[0].lower() == "#Fixed".lower():
self.metadata['file_info']['fixed_devices'] = tokenized[1:]
elif tokenized[0].lower() == "#Filename".lower():
self.metadata['file_info']['filename'] = tokenized[1]
#print 'filename ', tokenized[1]
pattern = re.compile(
'^(?P<base>[^.]*?)(?P<seq>[0-9]*)(?P<ext>[.].*)?$')
match = pattern.match(tokenized[1] + '.bt7')
dict((a, match.group(a) + "") for a in ['base', 'seq', 'ext'])
#print 'filebase ',match.group('base')
self.metadata['file_info']['filebase'] = match.group('base')
self.metadata['file_info']['fileseq_number'] = match.group(
'seq')
elif tokenized[0].lower() == "#Comment".lower():
mycomment = ''
for i in range(1, len(tokenized)):
mycomment = mycomment + ' ' + tokenized[i]
self.metadata['file_info']['comment'] = mycomment
elif tokenized[0].lower() == "#MonoSpacing".lower():
self.metadata['dspacing']['monochromator_dspacing'] = float(
tokenized[1])
elif tokenized[0].lower() == "#AnaSpacing".lower():
self.metadata['dspacing']['analyzer_dspacing'] = float(
tokenized[1])
elif tokenized[0].lower() == "#TemperatureUnits".lower():
self.metadata['temperature_info']['units'] = tokenized[1]
elif tokenized[0].lower() == "#Orient".lower():
self.metadata['orient1']['h'] = float(tokenized[1])
self.metadata['orient1']['k'] = float(tokenized[2])
self.metadata['orient1']['l'] = float(tokenized[3])
self.metadata['orient2']['h'] = float(tokenized[4])
self.metadata['orient2']['k'] = float(tokenized[5])
self.metadata['orient2']['l'] = float(tokenized[6])
elif tokenized[0].lower() == "#Lattice".lower():
self.metadata['lattice']['a'] = float(tokenized[1])
self.metadata['lattice']['b'] = float(tokenized[2])
self.metadata['lattice']['c'] = float(tokenized[3])
self.metadata['lattice']['alpha'] = float(tokenized[4])
self.metadata['lattice']['beta'] = float(tokenized[5])
self.metadata['lattice']['gamma'] = float(tokenized[6])
elif tokenized[0].lower() == "#AnalyzerDetectorMode".lower():
self.metadata['count_info'][
'analyzerdetectormode'] = tokenized[2].lower()
elif tokenized[0].lower() == "#Reference".lower():
self.metadata['count_info']['count_type'] = tokenized[2].lower(
)
elif tokenized[0].lower() == "#Signal".lower():
self.metadata['count_info']['signal'] = tokenized[2].lower()
elif tokenized[0].lower(
) == "#AnalyzerDetectorDevicesOfInterest".lower():
self.metadata['count_info']['AnalyzerDetectorDevicesOfInterest'
.lower()] = tokenized[1:]
elif tokenized[0].lower() == "#AnalyzerDDGroup".lower():
self.metadata['count_info'][
'AnalyzerDDGroup'.lower()] = tokenized[1:]
elif tokenized[0].lower() == "#AnalyzerDoorDetectorGroup".lower():
self.metadata['count_info'][
'AnalyzerDoorDetectorGroup'.lower()] = tokenized[1:]
elif tokenized[0].lower() == "#AnalyzerSDGroup".lower():
self.metadata['count_info'][
'AnalyzerSDGroup'.lower()] = tokenized[1:]
elif tokenized[0].lower() == "#AnalyzerPSDGroup".lower():
self.metadata['count_info'][
'AnalyzerPSDGroup'.lower()] = tokenized[1:]
elif tokenized[0].lower() == "#AnalyzerFocusMode".lower():
self.metadata['count_info'][
'analyzerfocusmode'.lower()] = tokenized[1]
elif tokenized[0].lower() == "#MonoVertiFocus".lower():
self.metadata['count_info'][
'monovertifocus'.lower()] = tokenized[1]
elif tokenized[0].lower() == "#MonoHorizFocus".lower():
self.metadata['count_info'][
'monohorizfocus'.lower()] = tokenized[1]
elif tokenized[0].lower() == "#FixedE".lower():
try:
self.metadata['energy_info'][
'efixed'.lower()] = tokenized[1]
except IndexError:
pass
try:
self.metadata['energy_info']['ef'.lower()] = float(
tokenized[2])
except IndexError:
pass
elif tokenized[0].lower() == "#ScanDescr".lower():
scanstr = ''
for i in range(1, len(tokenized)):
scanstr = scanstr + tokenized[i] + ' '
self.metadata['file_info']['scan_description'] = scanstr
#print 'scanstr',scanstr
myparser = scanparser.scanparser(scanstr)
self.metadata['count_info']['varying'] = myparser.get_varying()
self.metadata['count_info']['ranges'] = myparser.ranges
#print 'parsed'
#if self.metadata['file_info']['filebase']!='fpx':
# self.additional_metadata['parsed_scandescription']=self.parse_scan(scanstr)
#CAN'T SEEM TO PARSE fpx files, but if the filename is broken as in the last cycle, then how do I know?
#Better soln is to fix parser
#print self.metadata['scan_description']['range']
else:
currfield = tokenized[0].lower().lower().strip('#')
self.additional_metadata[currfield] = (tokenized[1:])
if tokenized[0] != '#Columns'.lower():
self.header.append(returnline[0])
if tokenized[0] == '#Columns'.lower():
self.get_columnmetadatas_bt7(tokenized)
count = 0
try:
lines = int(self.lines)
except:
lines = N.Inf
while 1:
lineStr = myfile.readline()
if not (lineStr):
break
if lineStr[0] != "#":
if count >= lines:
break
strippedLine = lineStr.rstrip()
tokenized = strippedLine.split()
for i in range(len(tokenized)):
field = self.columnlist[i]
try:
if field.lower(
) == 'time' and self.timestamp_flag == False:
#timedelta=mx.DateTime.DateTimeDelta(0,0,0,float(tokenized[i])) #orig
#self.columndict['timestamp'].append((timeobj+timedelta).ticks()) #orig
#timestamp_flag is True if the timestamp is already given in the file
timedelta = datetime.timedelta(
seconds=float(tokenized[i]))
self.columndict['timestamp'].append(
mktime(
(timeobj + timedelta).timetuple()))
timeobj = timeobj + timedelta
self.columndict[field].append(
float(tokenized[i]))
except ValueError:
self.columndict[field].append((tokenized[i]))
count = count + 1
myFlag = False
if len(self.columndict[self.columnlist[0]]) == 0:
self.columndict = {}
self.columnlist = []
#This is a drastic step, but if the file is empty, then no point in even recording the placeholders
#print self.columndict['Qx']
#print self.columnlist
return
def readbt7(self, myfile):
#get first line
myFlag = True
#self.metadata={}
self.header = []
returnline = ['']
while myFlag:
tokenized = get_tokenized_line(myfile, returnline=returnline)
#print tokenized
if tokenized == []:
tokenized = ['']
if tokenized[0].lower() == "#Date".lower():
pass
elif tokenized[0].lower() == "#Date".lower():
#time.strptime("2007-11-03 22:33:22 EDT", "%Y-%m-%d %H:%M:%S %Z")
date_tokens = tokenized[1].split('-')
self.metadata['timestamp'] = {}
month = int(date_tokens[1].strip("\'"))
day = int(date_tokens[2].strip("\'"))
year = int(date_tokens[0].strip("\'"))
stime = tokenized[2].strip("\'")
stimetok = stime.split(':')
hour = int(stimetok[0])
minute = int(stimetok[1])
second = int(stimetok[2])
self.metadata['timestamp']['month'] = int(
date_tokens[1].strip("\'"))
self.metadata['timestamp']['day'] = int(
date_tokens[2].strip("\'"))
self.metadata['timestamp']['year'] = int(
date_tokens[0].strip("\'"))
self.metadata['timestamp']['time'] = tokenized[2].strip("\'")
elif tokenized[0].lower() == "#Epoch".lower():
#timeobj=date.datatetime(year,month,day,hour,minute,second)
Epoch = float(tokenized[1])
#timeobj=mx.DateTime.DateTimeFromTicks(ticks=Epoch) #what I originally used
timeobj = datetime.datetime.fromtimestamp(Epoch)
#print 'timeobj ',timeobj
#print 'Epoch ', Epoch
self.metadata.epoch = Epoch #timeobj
#print self.metadata['timestamp']
elif tokenized[0].lower() == "#InstrName".lower():
self.metadata.instrument = tokenized[1].lower()
elif tokenized[0].lower() == "#ExptID".lower():
self.metadata.experiment_id = tokenized[1].lower()
elif tokenized[0].lower() == "#Fixed".lower():
self.metadata.fixed_devices = tokenized[1:]
elif tokenized[0].lower() == "#Filename".lower():
self.metadata.filename = tokenized[1]
#print 'filename ', tokenized[1]
pattern = re.compile(
'^(?P<base>[^.]*?)(?P<seq>[0-9]*)(?P<ext>[.].*)?$')
match = pattern.match(tokenized[1] + '.bt7')
dict((a, match.group(a) + "") for a in ['base', 'seq', 'ext'])
#print 'filebase ',match.group('base')
self.metadata.filebase = match.group('base')
self.metadata.fileseq_number = match.group('seq')
elif tokenized[0].lower() == "#Comment".lower():
mycomment = ''
for i in range(1, len(tokenized)):
mycomment = mycomment + ' ' + tokenized[i]
self.metadata.comment = mycomment
elif tokenized[0].lower() == "#MonoSpacing".lower():
self.metadata.monochromator_dspacing = float(tokenized[1])
elif tokenized[0].lower() == "#AnaSpacing".lower():
self.metadata.analyzer_dspacing = float(tokenized[1])
elif tokenized[0].lower() == "#TemperatureUnits".lower():
self.metadata.temperature_units = tokenized[1]
elif tokenized[0].lower() == "#Orient".lower():
h1 = float(tokenized[1])
k1 = float(tokenized[2])
l1 = float(tokenized[3])
h2 = float(tokenized[4])
k2 = float(tokenized[5])
l2 = float(tokenized[6])
self.metadata.orientation = Orientation([h1, k1, l1],
[h2, k2, l2])
elif tokenized[0].lower() == "#Lattice".lower():
a = float(tokenized[1])
b = float(tokenized[2])
c = float(tokenized[3])
alpha = float(tokenized[4])
beta = float(tokenized[5])
gamma = float(tokenized[6])
self.metadata.lattice = Lattice(a, b, c, alpha, beta, gamma)
elif tokenized[0].lower() == "#AnalyzerDetectorMode".lower():
self.metadata.analyzerdetectormode = tokenized[2].lower()
elif tokenized[0].lower() == "#Reference".lower():
self.metadata.count_type = tokenized[2].lower()
elif tokenized[0].lower() == "#Signal".lower():
self.metadata.signal = tokenized[2].lower()
elif tokenized[0].lower(
) == "#AnalyzerDetectorDevicesOfInterest".lower():
self.metadata.analyzerdetectordevicesofinterest = tokenized[1:]
elif tokenized[0].lower() == "#AnalyzerDDGroup".lower():
self.metadata.analyzerddgroup = tokenized[1:]
elif tokenized[0].lower() == "#AnalyzerDoorDetectorGroup".lower():
self.metadata.analyzerdoordetectorgroup = tokenized[1:]
elif tokenized[0].lower() == "#AnalyzerSDGroup".lower():
self.metadata.analyzersdgroup = tokenized[1:]
elif tokenized[0].lower() == "#AnalyzerPSDGroup".lower():
self.metadata.analyzerpsdgroup = tokenized[1:]
elif tokenized[0].lower() == "#AnalyzerFocusMode".lower():
self.metadata.analyzerfocusmode = tokenized[1]
elif tokenized[0].lower() == "#MonoVertiFocus".lower():
self.metadata.monovertifocus = tokenized[1]
elif tokenized[0].lower() == "#MonoHorizFocus".lower():
self.metadata.monohorizfocus = tokenized[1]
elif tokenized[0].lower() == "#FixedE".lower():
try:
self.metadata.efixed = tokenized[1]
except IndexError:
pass
try:
self.metadata.ef = float(tokenized[2])
except IndexError:
pass
elif tokenized[0].lower() == "#ScanDescr".lower():
scanstr = ''
for i in range(1, len(tokenized)):
scanstr = scanstr + tokenized[i] + ' '
self.metadata.scan_description = scanstr
#print 'scanstr',scanstr
myparser = scanparser.scanparser(scanstr)
self.metadata.varying = myparser.get_varying()
self.metadata.ranges = myparser.ranges
#print 'parsed'
#if self.metadata['file_info']['filebase']!='fpx':
# self.additional_metadata['parsed_scandescription']=self.parse_scan(scanstr)
#CAN'T SEEM TO PARSE fpx files, but if the filename is broken as in the last cycle, then how do I know?
#Better soln is to fix parser
#print self.metadata['scan_description']['range']
else:
currfield = tokenized[0].lower().lower().strip('#')
setattr(self.metadata, currfield, tokenized[1:])
if tokenized[0] != '#Columns'.lower():
self.header.append(returnline[0])
if tokenized[0] == '#Columns'.lower():
self.get_columnmetadatas_bt7(tokenized)
count = 0
try:
lines = int(self.lines)
except:
lines = N.Inf
while 1:
lineStr = myfile.readline()
if not (lineStr):
break
if lineStr[0] != "#":
if count >= lines:
break
strippedLine = lineStr.rstrip()
tokenized = strippedLine.split()
#for field in self.data.__dict__.keys():
for i in range(len(tokenized)):
field = self.columnlist[i]
try:
if field.lower(
) == 'time' and self.timestamp_flag == False:
#timedelta=mx.DateTime.DateTimeDelta(0,0,0,float(tokenized[i])) #orig
#self.columndict['timestamp'].append((timeobj+timedelta).ticks()) #orig
#timestamp_flag is True if the timestamp is already given in the file
timedelta = datetime.timedelta(
seconds=float(tokenized[i]))
self.data.timestamp.append(
mktime(
(timeobj + timedelta).timetuple()))
timeobj = timeobj + timedelta
self.data[field].append(float(tokenized[i]))
except ValueError:
self.data[field].append((tokenized[i]))
count = count + 1
myFlag = False
return
