def test_print_oneline_for_errors_in_the_same_line() -> None:
# Issue #136
path = get_data("tests/test_schema/CommonWorkflowLanguage.yml")
assert path
document_loader, avsc_names, schema_metadata, metaschema_loader = load_schema(path)
assert isinstance(avsc_names, Names)
src = "test17.cwl"
path = get_data("tests/test_schema/" + src)
assert path
with pytest.raises(ValidationException):
try:
load_and_validate(
document_loader,
avsc_names,
path,
True,
)
except ValidationException as e:
msgs = to_one_line_messages(e).splitlines()
assert len(msgs) == 2, msgs
assert msgs[0].endswith(src + ":14:5: missing required field `id`")
assert msgs[1].endswith(
src + ":14:5: invalid field `aa`, expected one of: 'label', "
"'secondaryFiles', 'format', 'streamable', 'doc', 'id', "
"'outputBinding', 'type'"
)
print("\n", e)
raise
def test_print_oneline():
# Issue #135
document_loader, avsc_names, schema_metadata, metaschema_loader = load_schema(
get_data("tests/test_schema/CommonWorkflowLanguage.yml"))
src = "test15.cwl"
with pytest.raises(ValidationException):
try:
load_and_validate(
document_loader,
avsc_names,
str(get_data("tests/test_schema/" + src)),
True,
)
except ValidationException as e:
msgs = to_one_line_messages(e).splitlines()
assert len(msgs) == 2
assert msgs[0].endswith(
src + ":11:7: invalid field `invalid_field`, expected one of: "
"'loadContents', 'position', 'prefix', 'separate', "
"'itemSeparator', 'valueFrom', 'shellQuote'")
assert msgs[1].endswith(
src +
":12:7: invalid field `another_invalid_field`, expected one of: "
"'loadContents', 'position', 'prefix', 'separate', 'itemSeparator', "
"'valueFrom', 'shellQuote'")
print("\n", e)
raise
def test_print_oneline_for_errors_in_resolve_ref() -> None:
# Issue #141
path = get_data("tests/test_schema/CommonWorkflowLanguage.yml")
assert path
document_loader, avsc_names, schema_metadata, metaschema_loader = load_schema(path)
assert isinstance(avsc_names, Names)
src = "test18.cwl"
path = get_data("tests/test_schema/" + src)
assert path
fullpath = normpath(path)
with pytest.raises(ValidationException):
try:
load_and_validate(document_loader, avsc_names, str(fullpath), True)
except ValidationException as e:
msg = to_one_line_messages(e)
# convert Windows path to Posix path
if "\\" in fullpath:
fullpath = "/" + fullpath.lower().replace("\\", "/")
print("\n", e)
assert msg.endswith(
src + ":14:5: Field `type` references unknown identifier "
"`Filea`, tried file://%s#Filea" % (fullpath)
)
raise
def test_print_oneline_for_invalid_yaml():
# Issue #137
document_loader, avsc_names, schema_metadata, metaschema_loader = load_schema(
get_data("tests/test_schema/CommonWorkflowLanguage.yml"))
src = "test16.cwl"
with pytest.raises(ValidationException):
try:
load_and_validate(
document_loader,
avsc_names,
str(get_data("tests/test_schema/" + src)),
True,
)
except ValidationException as e:
msg = to_one_line_messages(e)
assert msg.endswith(src + ":11:1: could not find expected ':'")
print("\n", e)
raise