def test_load_cwlschema(self):
doc = cg_metaschema.load_document(
file_uri(get_data("tests/test_schema/CommonWorkflowLanguage.yml")),
"", cg_metaschema.LoadingOptions())
with open(get_data("tests/cwl-pre.yml")) as f:
pre = json.load(f)
saved = [d.save() for d in doc]
self.assertEqual(saved, JsonDiffMatcher(pre))
def test_load_metaschema(self):
doc = cg_metaschema.load_document(
file_uri(get_data("metaschema/metaschema.yml")), "",
cg_metaschema.LoadingOptions())
with open(get_data("tests/metaschema-pre.yml")) as f:
pre = json.load(f)
saved = [d.save(relative_uris=False) for d in doc]
self.assertEqual(saved, JsonDiffMatcher(pre))
def test_load_metaschema(metaschema_pre: Any) -> None:
path = get_data("metaschema/metaschema.yml")
assert path
doc = cg_metaschema.load_document(
file_uri(path),
"",
None,
)
saved = [d.save(relative_uris=False) for d in doc]
assert saved == JsonDiffMatcher(metaschema_pre)
def test_load_cwlschema():
doc = cg_metaschema.load_document(
file_uri(get_data("tests/test_schema/CommonWorkflowLanguage.yml")),
"",
cg_metaschema.LoadingOptions(),
)
with open(get_data("tests/cwl-pre.yml")) as f:
pre = json.load(f)
saved = [d.save(relative_uris=False) for d in doc]
assert saved == JsonDiffMatcher(pre)
def test_load_pt(self):
doc = cg_metaschema.load_document(file_uri(get_data("tests/pt.yml")),
"", cg_metaschema.LoadingOptions())
self.assertEqual([
'https://w3id.org/cwl/salad#null',
'http://www.w3.org/2001/XMLSchema#boolean',
'http://www.w3.org/2001/XMLSchema#int',
'http://www.w3.org/2001/XMLSchema#long',
'http://www.w3.org/2001/XMLSchema#float',
'http://www.w3.org/2001/XMLSchema#double',
'http://www.w3.org/2001/XMLSchema#string'
], doc.symbols)
def test_load_pt():
doc = cg_metaschema.load_document(file_uri(get_data("tests/pt.yml")), "",
cg_metaschema.LoadingOptions())
assert [
"https://w3id.org/cwl/salad#null",
"http://www.w3.org/2001/XMLSchema#boolean",
"http://www.w3.org/2001/XMLSchema#int",
"http://www.w3.org/2001/XMLSchema#long",
"http://www.w3.org/2001/XMLSchema#float",
"http://www.w3.org/2001/XMLSchema#double",
"http://www.w3.org/2001/XMLSchema#string",
] == doc.symbols
def test_load_metaschema() -> None:
path = get_data("metaschema/metaschema.yml")
assert path
doc = cg_metaschema.load_document(
file_uri(path),
"",
cg_metaschema.LoadingOptions(),
)
path2 = get_data("tests/metaschema-pre.yml")
assert path2
with open(path2) as f:
pre = json.load(f)
saved = [d.save(relative_uris=False) for d in doc]
assert saved == JsonDiffMatcher(pre)
def test_import2(self):
rs = cg_metaschema.load_document(
file_uri(get_data("tests/docimp/d1.yml")), "",
cg_metaschema.LoadingOptions())
self.assertEqual([{
'doc': [
u'*Hello*', 'hello 2', u'*dee dee dee five*', 'hello 3',
'hello 4', u'*dee dee dee five*', 'hello 5'
],
'type':
'documentation',
'name':
file_uri(get_data("tests/docimp/d1.yml")) +
"#Semantic_Annotations_for_Linked_Avro_Data"
}], [r.save() for r in rs])
def test_import2():
rs = cg_metaschema.load_document(file_uri(get_data("tests/docimp/d1.yml")),
"", cg_metaschema.LoadingOptions())
assert [{
"doc": [
"*Hello*",
"hello 2",
"*dee dee dee five*",
"hello 3",
"hello 4",
"*dee dee dee five*",
"hello 5",
],
"type":
"documentation",
"name":
file_uri(get_data("tests/docimp/d1.yml")) +
"#Semantic_Annotations_for_Linked_Avro_Data",
}] == [r.save() for r in rs]
