class Pipe2(Pipe):
requirements = {'a2'}
transform_requires = {
'x': types.List(float),
}
fit_requires = {
'x': types.List(float),
}
fitted_parameters = {'mean': float, 'var': float}
fit_parameters = {'unused': float}
transform_modifies = {
'x': types.List(float),
}
def fit(self, data: dict, parameters: dict = None):
self['mean'] = sum(data['x']) / len(data['x'])
self['var'] = sum([x_i**2 for x_i in data['x']]) / len(
data['x']) - self['mean']**2
def transform(self, data: dict):
data['x'] = [(x_i - self['mean']) / self['var']**0.5
for x_i in data['x']]
return data
class Pipe(pipe.Pipe):
requirements = {'sklearn'}
# variables required by fit (supervised learning)
fit_requires = {
# (arbitrary items, arbitrary features)
'x': types.Array(np.float64, shape=(None, None)),
'y': types.List(float)
}
transform_requires = {'x': types.List(float)}
# parameter passed to fit()
fit_parameters = {'alpha': float}
# parameter assigned in fit()
fitted_parameters = {'model': object}
# type and key of transform
transform_modifies = {'model': object}
def fit(self, data, parameters=None):
import sklearn.linear_model
self['model'] = sklearn.linear_model.Lasso(parameters['alpha'])
self['model'].fit(data['x'], data['y'])
def transform(self, data):
data['model'] = self['model']
return data
class Pipe4(Pipe):
fit_requires = {
'x1': types.List(float),
}
fitted_parameters = {'mean': float}
transform_requires = {
'x': types.List(float),
}
def test_transform_schema(self):
p = Pipe()
self.assertEqual(p.transform_schema({'x': types.List(float)}), {
'x': types.List(float),
'model': object
})
with self.assertRaises(exceptions.WrongSchema) as e:
p.transform_schema({'y': types.List(float)})
self.assertIn('in transform', str(e.exception))
def test_two_fit_schema(self):
# P4 fit-needs 'x1', P2 fit-needs 'x' (float) => fit_requires needs both on its first type-occurrence
p = Pipeline([Pipe1(), Pipe4(), Pipe2()])
self.assertEqual(p.transform_requires, {'x': types.List(str)})
self.assertEqual(p.fit_requires, {
'x': types.List(str),
'x1': types.List(float)
})
self.assertEqual(p.transform_modifies, {'x': types.List(float)})
class Pipe1(Pipe):
requirements = {'a1'}
transform_requires = {
'x': types.List(str),
}
transform_modifies = {
'x': types.List(float),
}
def transform(self, data: dict):
data['x'] = [float(x_i) for x_i in data['x']]
return data
def test_two_transform_data(self):
# P1 needs 'x', P2 needs 'x1'
p = Pipeline([Pipe1(), Pipe3(), Pipe2()])
self.assertEqual(p.transform_requires, {
'x': types.List(str),
'x1': types.List(str)
})
self.assertEqual(p.fit_requires, {
'x': types.List(str),
'x1': types.List(str)
})
self.assertEqual(p.transform_modifies, {'x': types.List(float)})
class PipeWrongTransform(Pipe):
"""
Claims to convert to float, but converts to int
"""
requirements = {'a1'}
transform_requires = {
'x': types.List(str),
}
transform_modifies = {
'x': types.List(float),
}
def transform(self, data: dict):
data['x'] = [int(x_i) for x_i in data['x']]
return data
def test_basic(self):
p = Pipeline([Pipe1(), Pipe2()])
self.assertEqual(p.fitted_parameters, {
'0': {},
'1': {
'mean': float,
'var': float
}
})
self.assertEqual(p.transform_requires, {'x': types.List(str)})
self.assertEqual(p.fit_requires, {'x': types.List(str)})
p.fit({'x': ['1', '2', '3']}, {'1': {'unused': 1.0}})
result = p.transform({'x': ['1', '2', '3']})
# std([1,2,3]) == 0.816496580927726
self.assertEqual(result['x'],
[-1.2247448713915887, 0.0, 1.2247448713915887])
class FillNaN(Pipe):
fit_requires = transform_modifies = transform_requires = {
'x': sf_types.PandasDataFrame(schema={}),
'x_categorical': sf_types.PandasDataFrame(schema={})
}
fitted_parameters = {
'means': sf_types.List(float),
'most_frequent': sf_types.List(str)
}
def fit(self, data: dict, parameters: dict = None):
self['means'] = data['x'].mean(axis=0)
self['most_frequent'] = data['x_categorical'].mode(axis=0)
def transform(self, data: dict):
data['x'] = data['x'].fillna(self['means'])
for column in data['x_categorical'].columns:
data['x_categorical'].loc[
data['x_categorical'][column].isnull(),
column] = self['most_frequent'][column][0]
return data
class SplitNumericCategorical(Pipe):
fit_requires = transform_requires = {
'x': sf_types.PandasDataFrame(schema={})
}
transform_modifies = {
'x_categorical': sf_types.PandasDataFrame(schema={}),
'x': sf_types.PandasDataFrame(schema={})
}
fitted_parameters = {'numeric_columns': sf_types.List(str)}
def fit(self, data: dict, parameters: dict = None):
self['numeric_columns'] = list(
data['x'].select_dtypes(include=[np.number]).columns)
def transform(self, data: dict):
data['x_categorical'] = data['x'].drop(self['numeric_columns'], axis=1)
data['x'] = data['x'].loc[:, self['numeric_columns']]
return data
def test_transform_schema(self):
# P1 needs 'x', P2 needs 'x1'
p = Pipeline([Pipe1(), Pipe3(), Pipe2()])
# 'x1' is passed along without modification
self.assertEqual(
p.transform_schema({
'x': types.List(str),
'x1': types.List(str)
}), {
'x': types.List(float),
'x1': types.List(str)
})
with self.assertRaises(exceptions.WrongSchema) as e:
p.transform_schema({'y': types.List(str)})
self.assertIn('in transform of pipe \'0\' of Pipeline',
str(e.exception))
with self.assertRaises(exceptions.WrongSchema) as e:
p.transform_schema({'x': types.List(str)})
self.assertIn('in transform of pipe \'1\' of Pipeline',
str(e.exception))
class Pipe3(Pipe):
transform_requires = {
'x1': types.List(str),
'x': types.List(float),
}
