def test_scaler():
"""Test scaling of dataset along all axis
"""
# First test with 1D data
X = np.random.randn(5)
scaler = Scaler()
X_scaled = scaler.fit(X).transform(X, copy=False)
assert_array_almost_equal(X_scaled.mean(axis=0), 0.0)
assert_array_almost_equal(X_scaled.std(axis=0), 1.0)
X = np.random.randn(4, 5)
scaler = Scaler()
X_scaled = scaler.fit(X).transform(X, copy=False)
assert_array_almost_equal(X_scaled.mean(axis=0), 5*[0.0])
assert_array_almost_equal(X_scaled.std(axis=0), 5*[1.0])
# Check that X has not been copied
assert X_scaled is X
X_scaled = scaler.fit(X).transform(X, copy=True)
assert_array_almost_equal(X_scaled.mean(axis=0), 5*[0.0])
assert_array_almost_equal(X_scaled.std(axis=0), 5*[1.0])
# Check that X has not been copied
assert X_scaled is not X
X_scaled = scale(X, axis=1, with_std=False)
assert_array_almost_equal(X_scaled.mean(axis=1), 4*[0.0])
X_scaled = scale(X, axis=1, with_std=True)
assert_array_almost_equal(X_scaled.std(axis=1), 4*[1.0])
def test_scaler():
"""Test scaling of dataset along all axis"""
# First test with 1D data
X = np.random.randn(5)
scaler = Scaler()
X_scaled = scaler.fit(X).transform(X, copy=False)
assert_array_almost_equal(X_scaled.mean(axis=0), 0.0)
assert_array_almost_equal(X_scaled.std(axis=0), 1.0)
# Test with 1D list
X = [0., 1., 2, 0.4, 1.]
scaler = Scaler()
X_scaled = scaler.fit(X).transform(X, copy=False)
assert_array_almost_equal(X_scaled.mean(axis=0), 0.0)
assert_array_almost_equal(X_scaled.std(axis=0), 1.0)
X_scaled = scale(X)
assert_array_almost_equal(X_scaled.mean(axis=0), 0.0)
assert_array_almost_equal(X_scaled.std(axis=0), 1.0)
# Test with 2D data
X = np.random.randn(4, 5)
X[:, 0] = 0.0 # first feature is always of zero
scaler = Scaler()
X_scaled = scaler.fit(X).transform(X, copy=True)
assert not np.any(np.isnan(X_scaled))
assert_array_almost_equal(X_scaled.mean(axis=0), 5 * [0.0])
assert_array_almost_equal(X_scaled.std(axis=0), [0., 1., 1., 1., 1.])
# Check that X has not been copied
assert X_scaled is not X
X_scaled = scale(X, axis=1, with_std=False)
assert not np.any(np.isnan(X_scaled))
assert_array_almost_equal(X_scaled.mean(axis=1), 4 * [0.0])
X_scaled = scale(X, axis=1, with_std=True)
assert not np.any(np.isnan(X_scaled))
assert_array_almost_equal(X_scaled.mean(axis=1), 4 * [0.0])
assert_array_almost_equal(X_scaled.std(axis=1), 4 * [1.0])
# Check that the data hasn't been modified
assert X_scaled is not X
X_scaled = scaler.fit(X).transform(X, copy=False)
assert not np.any(np.isnan(X_scaled))
assert_array_almost_equal(X_scaled.mean(axis=0), 5 * [0.0])
assert_array_almost_equal(X_scaled.std(axis=0), [0., 1., 1., 1., 1.])
# Check that X has not been copied
assert X_scaled is X
X = np.random.randn(4, 5)
X[:, 0] = 1.0 # first feature is a constant, non zero feature
scaler = Scaler()
X_scaled = scaler.fit(X).transform(X, copy=True)
assert not np.any(np.isnan(X_scaled))
assert_array_almost_equal(X_scaled.mean(axis=0), 5 * [0.0])
assert_array_almost_equal(X_scaled.std(axis=0), [0., 1., 1., 1., 1.])
# Check that X has not been copied
assert X_scaled is not X
def test_scaler():
"""Test scaling of dataset along all axis"""
# First test with 1D data
X = np.random.randn(5)
scaler = Scaler()
X_scaled = scaler.fit(X).transform(X, copy=False)
assert_array_almost_equal(X_scaled.mean(axis=0), 0.0)
assert_array_almost_equal(X_scaled.std(axis=0), 1.0)
X = np.random.randn(4, 5)
scaler = Scaler()
X_scaled = scaler.fit(X).transform(X, copy=False)
assert_array_almost_equal(X_scaled.mean(axis=0), 5 * [0.0])
assert_array_almost_equal(X_scaled.std(axis=0), 5 * [1.0])
# Check that X has not been copied
assert X_scaled is X
X_scaled = scaler.fit(X).transform(X, copy=True)
assert_array_almost_equal(X_scaled.mean(axis=0), 5 * [0.0])
assert_array_almost_equal(X_scaled.std(axis=0), 5 * [1.0])
# Check that X has not been copied
assert X_scaled is not X
X_scaled = scale(X, axis=1, with_std=False)
assert_array_almost_equal(X_scaled.mean(axis=1), 4 * [0.0])
X_scaled = scale(X, axis=1, with_std=True)
assert_array_almost_equal(X_scaled.std(axis=1), 4 * [1.0])
# Check that the data hasn't been modified
assert X_scaled is not X
def test_center_kernel():
"""Test that KernelCenterer is equivalent to Scaler in feature space"""
X_fit = np.random.random((5, 4))
scaler = Scaler(with_std=False)
scaler.fit(X_fit)
X_fit_centered = scaler.transform(X_fit)
K_fit = np.dot(X_fit, X_fit.T)
# center fit time matrix
centerer = KernelCenterer()
K_fit_centered = np.dot(X_fit_centered, X_fit_centered.T)
K_fit_centered2 = centerer.fit_transform(K_fit)
assert_array_almost_equal(K_fit_centered, K_fit_centered2)
# center predict time matrix
X_pred = np.random.random((2, 4))
K_pred = np.dot(X_pred, X_fit.T)
X_pred_centered = scaler.transform(X_pred)
K_pred_centered = np.dot(X_pred_centered, X_fit_centered.T)
K_pred_centered2 = centerer.transform(K_pred)
assert_array_almost_equal(K_pred_centered, K_pred_centered2)
def test_scaler_without_centering():
rng = np.random.RandomState(42)
X = rng.randn(4, 5)
X[:, 0] = 0.0 # first feature is always of zero
scaler = Scaler(with_mean=False)
X_scaled = scaler.fit(X).transform(X, copy=True)
assert not np.any(np.isnan(X_scaled))
assert_array_almost_equal(X_scaled.mean(axis=0),
[0., -0.01, 2.24, -0.35, -0.78], 2)
assert_array_almost_equal(X_scaled.std(axis=0), [0., 1., 1., 1., 1.])
# Check that X has not been copied
assert X_scaled is not X
X_scaled = scale(X, with_mean=False)
assert not np.any(np.isnan(X_scaled))
assert_array_almost_equal(X_scaled.mean(axis=0),
[0., -0.01, 2.24, -0.35, -0.78], 2)
assert_array_almost_equal(X_scaled.std(axis=0), [0., 1., 1., 1., 1.])
# Check that X has not been copied
assert X_scaled is not X
def test_scaler_without_centering():
rng = np.random.RandomState(42)
X = rng.randn(4, 5)
X[:, 0] = 0.0 # first feature is always of zero
scaler = Scaler(with_mean=False)
X_scaled = scaler.fit(X).transform(X, copy=True)
assert not np.any(np.isnan(X_scaled))
assert_array_almost_equal(
X_scaled.mean(axis=0), [0., -0.01, 2.24, -0.35, -0.78], 2)
assert_array_almost_equal(X_scaled.std(axis=0), [0., 1., 1., 1., 1.])
# Check that X has not been copied
assert X_scaled is not X
X_scaled = scale(X, with_mean=False)
assert not np.any(np.isnan(X_scaled))
assert_array_almost_equal(
X_scaled.mean(axis=0), [0., -0.01, 2.24, -0.35, -0.78], 2)
assert_array_almost_equal(X_scaled.std(axis=0), [0., 1., 1., 1., 1.])
# Check that X has not been copied
assert X_scaled is not X
def test_center_kernel():
"""Test that KernelCenterer is equivalent to Scaler in feature space"""
X_fit = np.random.random((5, 4))
scaler = Scaler(with_std=False)
scaler.fit(X_fit)
X_fit_centered = scaler.transform(X_fit)
K_fit = np.dot(X_fit, X_fit.T)
# center fit time matrix
centerer = KernelCenterer()
K_fit_centered = np.dot(X_fit_centered, X_fit_centered.T)
K_fit_centered2 = centerer.fit_transform(K_fit)
assert_array_almost_equal(K_fit_centered, K_fit_centered2)
# center predict time matrix
X_pred = np.random.random((2, 4))
K_pred = np.dot(X_pred, X_fit.T)
X_pred_centered = scaler.transform(X_pred)
K_pred_centered = np.dot(X_pred_centered, X_fit_centered.T)
K_pred_centered2 = centerer.transform(K_pred)
assert_array_almost_equal(K_pred_centered, K_pred_centered2)
def test_scaler():
"""Test scaling of dataset along all axis"""
# First test with 1D data
X = np.random.randn(5)
scaler = Scaler()
X_scaled = scaler.fit(X).transform(X, copy=False)
assert_array_almost_equal(X_scaled.mean(axis=0), 0.0)
assert_array_almost_equal(X_scaled.std(axis=0), 1.0)
# Test with 1D list
X = [0., 1., 2, 0.4, 1.]
scaler = Scaler()
X_scaled = scaler.fit(X).transform(X, copy=False)
assert_array_almost_equal(X_scaled.mean(axis=0), 0.0)
assert_array_almost_equal(X_scaled.std(axis=0), 1.0)
X_scaled = scale(X)
assert_array_almost_equal(X_scaled.mean(axis=0), 0.0)
assert_array_almost_equal(X_scaled.std(axis=0), 1.0)
# Test with 2D data
X = np.random.randn(4, 5)
X[:, 0] = 0.0 # first feature is always of zero
scaler = Scaler()
X_scaled = scaler.fit(X).transform(X, copy=True)
assert not np.any(np.isnan(X_scaled))
assert_array_almost_equal(X_scaled.mean(axis=0), 5 * [0.0])
assert_array_almost_equal(X_scaled.std(axis=0), [0., 1., 1., 1., 1.])
# Check that X has not been copied
assert X_scaled is not X
X_scaled = scale(X, axis=1, with_std=False)
assert not np.any(np.isnan(X_scaled))
assert_array_almost_equal(X_scaled.mean(axis=1), 4 * [0.0])
X_scaled = scale(X, axis=1, with_std=True)
assert not np.any(np.isnan(X_scaled))
assert_array_almost_equal(X_scaled.mean(axis=1), 4 * [0.0])
assert_array_almost_equal(X_scaled.std(axis=1), 4 * [1.0])
# Check that the data hasn't been modified
assert X_scaled is not X
X_scaled = scaler.fit(X).transform(X, copy=False)
assert not np.any(np.isnan(X_scaled))
assert_array_almost_equal(X_scaled.mean(axis=0), 5 * [0.0])
assert_array_almost_equal(X_scaled.std(axis=0), [0., 1., 1., 1., 1.])
# Check that X has not been copied
assert X_scaled is X
X = np.random.randn(4, 5)
X[:, 0] = 1.0 # first feature is a constant, non zero feature
scaler = Scaler()
X_scaled = scaler.fit(X).transform(X, copy=True)
assert not np.any(np.isnan(X_scaled))
assert_array_almost_equal(X_scaled.mean(axis=0), 5 * [0.0])
assert_array_almost_equal(X_scaled.std(axis=0), [0., 1., 1., 1., 1.])
# Check that X has not been copied
assert X_scaled is not X