def configuration(parent_package='', top_path=None):
from numpy import get_include
from scipy._build_utils.system_info import get_info
from scipy._build_utils import uses_blas64
from numpy.distutils.misc_util import Configuration
from os.path import join, dirname
if uses_blas64():
lapack_opt = get_info('lapack_ilp64_opt')
else:
lapack_opt = get_info('lapack_opt')
lib_inc = join(dirname(dirname(dirname(__file__))), '_lib')
bld_inc = join(dirname(dirname(dirname(__file__))), '_build_utils', 'src')
config = Configuration('_trlib', parent_package, top_path)
config.add_extension(
'_trlib',
sources=[
'_trlib.c', 'trlib_krylov.c', 'trlib_eigen_inverse.c',
'trlib_leftmost.c', 'trlib_quadratic_zero.c', 'trlib_tri_factor.c'
],
include_dirs=[get_include(), lib_inc, bld_inc, 'trlib'],
extra_info=lapack_opt,
)
return config
def configuration(parent_package='', top_path=None):
from scipy._build_utils.system_info import get_info, NotFoundError
lapack_opt = get_info("lapack_opt")
from numpy.distutils.misc_util import Configuration
config = Configuration('scipy', parent_package, top_path)
config.add_subpackage('cluster')
config.add_subpackage('constants')
config.add_subpackage('fftpack')
config.add_subpackage('integrate')
config.add_subpackage('interpolate')
config.add_subpackage('io')
config.add_subpackage('linalg')
config.add_data_files('*.pxd')
config.add_subpackage('misc')
config.add_subpackage('odr')
config.add_subpackage('optimize')
config.add_subpackage('signal')
config.add_subpackage('sparse')
config.add_subpackage('spatial')
config.add_subpackage('special')
config.add_subpackage('stats')
config.add_subpackage('ndimage')
config.add_subpackage('_build_utils')
config.add_subpackage('_lib')
config.make_config_py()
return config
def configuration(parent_package='', top_path=None):
import warnings
from numpy.distutils.misc_util import Configuration
from scipy._build_utils.system_info import get_info, BlasNotFoundError
config = Configuration('odr', parent_package, top_path)
libodr_files = ['d_odr.f',
'd_mprec.f',
'dlunoc.f']
blas_info = get_info('blas_opt')
if blas_info:
libodr_files.append('d_lpk.f')
else:
warnings.warn(BlasNotFoundError.__doc__)
libodr_files.append('d_lpkbls.f')
odrpack_src = [join('odrpack', x) for x in libodr_files]
config.add_library('odrpack', sources=odrpack_src)
sources = ['__odrpack.c']
libraries = ['odrpack'] + blas_info.pop('libraries', [])
include_dirs = ['.'] + blas_info.pop('include_dirs', [])
config.add_extension('__odrpack',
sources=sources,
libraries=libraries,
include_dirs=include_dirs,
depends=(['odrpack.h'] + odrpack_src),
**blas_info
)
config.add_data_dir('tests')
return config
def configuration(parent_package='',top_path=None):
from scipy._build_utils.system_info import get_info, NotFoundError
lapack_opt = get_info("lapack_opt")
from numpy.distutils.misc_util import Configuration
config = Configuration('scipy',parent_package,top_path)
config.add_subpackage('cluster')
config.add_subpackage('constants')
config.add_subpackage('fftpack')
config.add_subpackage('integrate')
config.add_subpackage('interpolate')
config.add_subpackage('io')
config.add_subpackage('linalg')
config.add_data_files('*.pxd')
config.add_subpackage('misc')
config.add_subpackage('odr')
config.add_subpackage('optimize')
config.add_subpackage('signal')
config.add_subpackage('sparse')
config.add_subpackage('spatial')
config.add_subpackage('special')
config.add_subpackage('stats')
config.add_subpackage('ndimage')
config.add_subpackage('_build_utils')
config.add_subpackage('_lib')
config.make_config_py()
return config
def configuration(parent_package='', top_path=None):
from scipy._build_utils.system_info import get_info
from numpy.distutils.misc_util import Configuration
from scipy._build_utils import get_g77_abi_wrappers
lapack_opt = get_info('lapack_opt')
config = Configuration('arpack', parent_package, top_path)
arpack_sources = [join('ARPACK', 'SRC', '*.f')]
arpack_sources.extend([join('ARPACK', 'UTIL', '*.f')])
arpack_sources += get_g77_abi_wrappers(lapack_opt)
config.add_library('arpack_scipy',
sources=arpack_sources,
include_dirs=[join('ARPACK', 'SRC')])
ext_sources = ['arpack.pyf.src']
config.add_extension(
'_arpack',
sources=ext_sources,
libraries=['arpack_scipy'],
extra_info=lapack_opt,
depends=arpack_sources,
)
config.add_data_dir('tests')
# Add license files
config.add_data_files('ARPACK/COPYING')
return config
def configuration(parent_package='', top_path=None):
import warnings
from numpy.distutils.misc_util import Configuration
from scipy._build_utils.system_info import get_info, BlasNotFoundError
config = Configuration('odr', parent_package, top_path)
libodr_files = ['d_odr.f', 'd_mprec.f', 'dlunoc.f']
blas_info = get_info('blas_opt')
if blas_info:
libodr_files.append('d_lpk.f')
else:
warnings.warn(BlasNotFoundError.__doc__)
libodr_files.append('d_lpkbls.f')
odrpack_src = [join('odrpack', x) for x in libodr_files]
config.add_library('odrpack', sources=odrpack_src)
sources = ['__odrpack.c']
libraries = ['odrpack'] + blas_info.pop('libraries', [])
include_dirs = ['.'] + blas_info.pop('include_dirs', [])
config.add_extension('__odrpack',
sources=sources,
libraries=libraries,
include_dirs=include_dirs,
depends=(['odrpack.h'] + odrpack_src),
**blas_info)
config.add_data_dir('tests')
return config
def configuration(parent_package='',top_path=None):
from scipy._build_utils.system_info import get_info, NotFoundError
from numpy.distutils.misc_util import Configuration
from scipy._build_utils import get_g77_abi_wrappers
config = Configuration('isolve',parent_package,top_path)
lapack_opt = get_info('lapack_opt')
# iterative methods
methods = ['BiCGREVCOM.f.src',
'BiCGSTABREVCOM.f.src',
'CGREVCOM.f.src',
'CGSREVCOM.f.src',
# 'ChebyREVCOM.f.src',
'GMRESREVCOM.f.src',
# 'JacobiREVCOM.f.src',
'QMRREVCOM.f.src',
# 'SORREVCOM.f.src'
]
Util = ['getbreak.f.src']
sources = Util + methods + ['_iterative.pyf.src']
sources = [join('iterative', x) for x in sources]
sources += get_g77_abi_wrappers(lapack_opt)
config.add_extension('_iterative',
sources=sources,
extra_info=lapack_opt)
config.add_data_dir('tests')
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration
from scipy._build_utils.system_info import get_info, NotFoundError, numpy_info
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
from scipy._build_utils import (get_g77_abi_wrappers, split_fortran_files)
lapack_opt = get_info('lapack_opt')
if not lapack_opt:
msg = 'No lapack/blas resources found.'
if sys.platform == "darwin":
msg = ('No lapack/blas resources found. '
'Note: Accelerate is no longer supported.')
raise NotFoundError(msg)
config = Configuration(None, parent_package, top_path)
config.set_options(ignore_setup_xxx_py=True,
assume_default_configuration=True,
delegate_options_to_subpackages=True,
quiet=True)
config.add_subpackage('scipy')
config.add_data_files(('scipy', '*.txt'))
config.get_version('scipy/version.py')
return config
def configuration(parent_package='',top_path=None):
from scipy._build_utils.system_info import get_info, NotFoundError
from numpy.distutils.misc_util import Configuration
from scipy._build_utils import get_g77_abi_wrappers
lapack_opt = get_info('lapack_opt')
config = Configuration('arpack', parent_package, top_path)
arpack_sources = [join('ARPACK','SRC', '*.f')]
arpack_sources.extend([join('ARPACK','UTIL', '*.f')])
arpack_sources += get_g77_abi_wrappers(lapack_opt)
config.add_library('arpack_scipy', sources=arpack_sources,
include_dirs=[join('ARPACK', 'SRC')])
ext_sources = ['arpack.pyf.src']
config.add_extension('_arpack',
sources=ext_sources,
libraries=['arpack_scipy'],
extra_info=lapack_opt,
depends=arpack_sources,
)
config.add_data_dir('tests')
# Add license files
config.add_data_files('ARPACK/COPYING')
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration
from scipy._build_utils.system_info import get_info, NotFoundError, numpy_info
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
from scipy._build_utils import (get_g77_abi_wrappers, split_fortran_files)
lapack_opt = get_info('lapack_opt')
if not lapack_opt:
msg = 'No lapack/blas resources found.'
if sys.platform == "darwin":
msg = ('No lapack/blas resources found. '
'Note: Accelerate is no longer supported.')
raise NotFoundError(msg)
config = Configuration(None, parent_package, top_path)
config.set_options(ignore_setup_xxx_py=True,
assume_default_configuration=True,
delegate_options_to_subpackages=True,
quiet=True)
config.add_subpackage('scipy')
config.add_data_files(('scipy', '*.txt'))
config.get_version('scipy/version.py')
return config
def configuration(parent_package='', top_path=None):
from scipy._build_utils.system_info import get_info, NotFoundError
from numpy.distutils.misc_util import Configuration
from scipy._build_utils import get_g77_abi_wrappers
config = Configuration('isolve', parent_package, top_path)
lapack_opt = get_info('lapack_opt')
# iterative methods
methods = [
'BiCGREVCOM.f.src',
'BiCGSTABREVCOM.f.src',
'CGREVCOM.f.src',
'CGSREVCOM.f.src',
# 'ChebyREVCOM.f.src',
'GMRESREVCOM.f.src',
# 'JacobiREVCOM.f.src',
'QMRREVCOM.f.src',
# 'SORREVCOM.f.src'
]
Util = ['getbreak.f.src']
sources = Util + methods + ['_iterative.pyf.src']
sources = [join('iterative', x) for x in sources]
sources += get_g77_abi_wrappers(lapack_opt)
config.add_extension('_iterative', sources=sources, extra_info=lapack_opt)
config.add_data_dir('tests')
return config
def configuration(parent_package='', top_path=None):
from scipy._build_utils.system_info import get_info, NotFoundError
from numpy.distutils.misc_util import Configuration
lapack_opt = get_info('lapack_opt')
if not lapack_opt:
if sys.platform == "darwin":
msg = ('No BLAS/LAPACK libraries found. '
'Note: Accelerate is no longer supported.')
else:
msg = 'No BLAS/LAPACK libraries found.'
msg += (
"\n"
"To build Scipy from sources, BLAS & LAPACK libraries "
"need to be installed.\n"
"See site.cfg.example in the Scipy source directory and\n"
"https://docs.scipy.org/doc/scipy/reference/building/index.html "
"for details.")
raise NotFoundError(msg)
config = Configuration(None, parent_package, top_path)
config.set_options(ignore_setup_xxx_py=True,
assume_default_configuration=True,
delegate_options_to_subpackages=True,
quiet=True)
config.add_subpackage('scipy')
config.add_data_files(('scipy', '*.txt'))
config.get_version('scipy/version.py')
return config
def configuration(parent_package='', top_path=None):
from scipy._build_utils.system_info import get_info
from numpy.distutils.misc_util import Configuration
from scipy._build_utils import (get_g77_abi_wrappers, uses_blas64,
blas_ilp64_pre_build_hook,
get_f2py_int64_options)
config = Configuration('isolve', parent_package, top_path)
if uses_blas64():
lapack_opt = get_info('lapack_ilp64_opt')
f2py_options = get_f2py_int64_options()
pre_build_hook = blas_ilp64_pre_build_hook(lapack_opt)
else:
lapack_opt = get_info('lapack_opt')
f2py_options = None
pre_build_hook = None
# iterative methods
methods = [
'BiCGREVCOM.f.src',
'BiCGSTABREVCOM.f.src',
'CGREVCOM.f.src',
'CGSREVCOM.f.src',
# 'ChebyREVCOM.f.src',
'GMRESREVCOM.f.src',
# 'JacobiREVCOM.f.src',
'QMRREVCOM.f.src',
# 'SORREVCOM.f.src'
]
Util = ['getbreak.f.src']
sources = Util + methods + ['_iterative.pyf.src']
sources = [join('iterative', x) for x in sources]
sources += get_g77_abi_wrappers(lapack_opt)
ext = config.add_extension('_iterative',
sources=sources,
f2py_options=f2py_options,
extra_info=lapack_opt)
ext._pre_build_hook = pre_build_hook
config.add_data_dir('tests')
return config
def configuration(parent_package='', top_path=None):
from scipy._build_utils.system_info import get_info
from numpy.distutils.misc_util import Configuration
from scipy._build_utils import (get_g77_abi_wrappers,
gfortran_legacy_flag_hook,
blas_ilp64_pre_build_hook, uses_blas64,
get_f2py_int64_options)
if uses_blas64():
lapack_opt = get_info('lapack_ilp64_opt', 2)
pre_build_hook = (gfortran_legacy_flag_hook,
blas_ilp64_pre_build_hook(lapack_opt))
f2py_options = get_f2py_int64_options()
else:
lapack_opt = get_info('lapack_opt')
pre_build_hook = gfortran_legacy_flag_hook
f2py_options = None
config = Configuration('arpack', parent_package, top_path)
arpack_sources = [join('ARPACK', 'SRC', '*.f')]
arpack_sources.extend([join('ARPACK', 'UTIL', '*.f')])
arpack_sources += get_g77_abi_wrappers(lapack_opt)
config.add_library('arpack_scipy',
sources=arpack_sources,
include_dirs=[join('ARPACK', 'SRC')],
_pre_build_hook=pre_build_hook)
ext = config.add_extension('_arpack',
sources=['arpack.pyf.src'],
libraries=['arpack_scipy'],
f2py_options=f2py_options,
extra_info=lapack_opt,
depends=arpack_sources)
ext._pre_build_hook = pre_build_hook
config.add_data_dir('tests')
# Add license files
config.add_data_files('ARPACK/COPYING')
return config
def configuration(parent_package='', top_path=None):
import warnings
from numpy.distutils.misc_util import Configuration
from scipy._build_utils.system_info import get_info
from scipy._build_utils import (uses_blas64, blas_ilp64_pre_build_hook,
combine_dict)
config = Configuration('odr', parent_package, top_path)
libodr_files = ['d_odr.f',
'd_mprec.f',
'dlunoc.f',
'd_lpk.f']
if uses_blas64():
blas_info = get_info('blas_ilp64_opt')
pre_build_hook = blas_ilp64_pre_build_hook(blas_info)
else:
blas_info = get_info('blas_opt')
pre_build_hook = None
odrpack_src = [join('odrpack', x) for x in libodr_files]
config.add_library('odrpack', sources=odrpack_src,
_pre_build_hook=pre_build_hook)
sources = ['__odrpack.c']
cfg = combine_dict(blas_info, numpy_nodepr_api,
libraries=['odrpack'],
include_dirs=['.'])
ext = config.add_extension('__odrpack',
sources=sources,
depends=(['odrpack.h'] + odrpack_src),
**cfg
)
ext._pre_build_hook = pre_build_hook
config.add_data_dir('tests')
return config
def configuration(parent_package='',top_path=None):
from numpy.distutils.misc_util import Configuration
from scipy._build_utils.system_info import get_info
lapack_opt = get_info('lapack_opt', notfound_action=2)
config = Configuration('interpolate', parent_package, top_path)
fitpack_src = [join('fitpack', '*.f')]
config.add_library('fitpack', sources=fitpack_src)
config.add_extension('interpnd',
sources=['interpnd.c'])
config.add_extension('_ppoly',
sources=['_ppoly.c'],
**lapack_opt)
config.add_extension('_bspl',
sources=['_bspl.c'],
libraries=['fitpack'],
depends=['src/__fitpack.h'] + fitpack_src)
config.add_extension('_fitpack',
sources=['src/_fitpackmodule.c'],
libraries=['fitpack'],
depends=(['src/__fitpack.h','src/multipack.h']
+ fitpack_src)
)
config.add_extension('dfitpack',
sources=['src/fitpack.pyf'],
libraries=['fitpack'],
depends=fitpack_src,
)
config.add_extension('_interpolate',
sources=['src/_interpolate.cpp'],
include_dirs=['src'],
depends=['src/interpolate.h'])
config.add_data_dir('tests')
return config
def configuration(parent_package='',top_path=None):
from numpy.distutils.misc_util import Configuration
from scipy._build_utils.system_info import get_info
from scipy._build_utils import numpy_nodepr_api
config = Configuration('dsolve',parent_package,top_path)
config.add_data_dir('tests')
lapack_opt = get_info('lapack_opt',notfound_action=2)
if sys.platform == 'win32':
superlu_defs = [('NO_TIMER',1)]
else:
superlu_defs = []
superlu_defs.append(('USE_VENDOR_BLAS',1))
superlu_src = join(dirname(__file__), 'SuperLU', 'SRC')
sources = list(glob.glob(join(superlu_src, '*.c')))
headers = list(glob.glob(join(superlu_src, '*.h')))
config.add_library('superlu_src',
sources=sources,
macros=superlu_defs,
include_dirs=[superlu_src],
)
# Extension
ext_sources = ['_superlumodule.c',
'_superlu_utils.c',
'_superluobject.c']
config.add_extension('_superlu',
sources=ext_sources,
libraries=['superlu_src'],
depends=(sources + headers),
extra_info=lapack_opt,
**numpy_nodepr_api
)
# Add license files
config.add_data_files('SuperLU/License.txt')
return config
def configuration(parent_package='',top_path=None):
from numpy.distutils.misc_util import Configuration
from scipy._build_utils.system_info import get_info
from scipy._build_utils import numpy_nodepr_api
config = Configuration('dsolve',parent_package,top_path)
config.add_data_dir('tests')
lapack_opt = get_info('lapack_opt',notfound_action=2)
if sys.platform == 'win32':
superlu_defs = [('NO_TIMER',1)]
else:
superlu_defs = []
superlu_defs.append(('USE_VENDOR_BLAS',1))
superlu_src = join(dirname(__file__), 'SuperLU', 'SRC')
sources = sorted(glob.glob(join(superlu_src, '*.c')))
headers = list(glob.glob(join(superlu_src, '*.h')))
config.add_library('superlu_src',
sources=sources,
macros=superlu_defs,
include_dirs=[superlu_src],
)
# Extension
ext_sources = ['_superlumodule.c',
'_superlu_utils.c',
'_superluobject.c']
config.add_extension('_superlu',
sources=ext_sources,
libraries=['superlu_src'],
depends=(sources + headers),
extra_info=lapack_opt,
**numpy_nodepr_api
)
# Add license files
config.add_data_files('SuperLU/License.txt')
return config
def configuration(parent_package='', top_path=None):
from numpy import get_include
from scipy._build_utils.system_info import get_info, NotFoundError
from numpy.distutils.misc_util import Configuration
from os.path import join, dirname
lapack_opt = get_info('lapack_opt')
lib_inc = join(dirname(dirname(dirname(__file__))), '_lib')
config = Configuration('_trlib', parent_package, top_path)
config.add_extension('_trlib',
sources=['_trlib.c', 'trlib_krylov.c',
'trlib_eigen_inverse.c', 'trlib_leftmost.c',
'trlib_quadratic_zero.c', 'trlib_tri_factor.c'],
include_dirs=[get_include(), lib_inc, 'trlib'],
extra_info=lapack_opt,
)
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration
from scipy._build_utils.system_info import get_info
lapack_opt = get_info('lapack_opt', notfound_action=2)
config = Configuration('interpolate', parent_package, top_path)
fitpack_src = [join('fitpack', '*.f')]
config.add_library('fitpack', sources=fitpack_src)
config.add_extension('interpnd', sources=['interpnd.c'])
config.add_extension('_ppoly', sources=['_ppoly.c'], **lapack_opt)
config.add_extension('_bspl',
sources=['_bspl.c'],
libraries=['fitpack'],
depends=['src/__fitpack.h'] + fitpack_src)
config.add_extension('_fitpack',
sources=['src/_fitpackmodule.c'],
libraries=['fitpack'],
depends=(['src/__fitpack.h', 'src/multipack.h'] +
fitpack_src))
config.add_extension(
'dfitpack',
sources=['src/fitpack.pyf'],
libraries=['fitpack'],
depends=fitpack_src,
)
config.add_extension('_interpolate',
sources=['src/_interpolate.cpp'],
include_dirs=['src'],
depends=['src/interpolate.h'])
config.add_data_dir('tests')
return config
def configuration(parent_package='', top_path=None):
from scipy._build_utils.system_info import get_info
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('cluster', parent_package, top_path)
blas_opt = get_info('lapack_opt')
config.add_data_dir('tests')
config.add_extension('_vq',
sources=[('_vq.c')],
include_dirs=[get_numpy_include_dirs()],
extra_info=blas_opt)
config.add_extension('_hierarchy',
sources=[('_hierarchy.c')],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_optimal_leaf_ordering',
sources=[('_optimal_leaf_ordering.c')],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='', top_path=None):
from scipy._build_utils.system_info import get_info
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
config = Configuration('cluster', parent_package, top_path)
blas_opt = get_info('lapack_opt')
config.add_data_dir('tests')
config.add_extension('_vq',
sources=[('_vq.c')],
include_dirs=[get_numpy_include_dirs()],
extra_info=blas_opt)
config.add_extension('_hierarchy',
sources=[('_hierarchy.c')],
include_dirs=[get_numpy_include_dirs()])
config.add_extension('_optimal_leaf_ordering',
sources=[('_optimal_leaf_ordering.c')],
include_dirs=[get_numpy_include_dirs()])
return config
def configuration(parent_package='',top_path=None):
from numpy.distutils.misc_util import Configuration
from scipy._build_utils.system_info import get_info
config = Configuration('integrate', parent_package, top_path)
# Get a local copy of lapack_opt_info
lapack_opt = dict(get_info('lapack_opt',notfound_action=2))
# Pop off the libraries list so it can be combined with
# additional required libraries
lapack_libs = lapack_opt.pop('libraries', [])
mach_src = [join('mach','*.f')]
quadpack_src = [join('quadpack', '*.f')]
lsoda_src = [join('odepack', fn) for fn in [
'blkdta000.f', 'bnorm.f', 'cfode.f',
'ewset.f', 'fnorm.f', 'intdy.f',
'lsoda.f', 'prja.f', 'solsy.f', 'srcma.f',
'stoda.f', 'vmnorm.f', 'xerrwv.f', 'xsetf.f',
'xsetun.f']]
vode_src = [join('odepack', 'vode.f'), join('odepack', 'zvode.f')]
dop_src = [join('dop','*.f')]
quadpack_test_src = [join('tests','_test_multivariate.c')]
odeint_banded_test_src = [join('tests', 'banded5x5.f')]
config.add_library('mach', sources=mach_src,
config_fc={'noopt':(__file__,1)})
config.add_library('quadpack', sources=quadpack_src)
config.add_library('lsoda', sources=lsoda_src)
config.add_library('vode', sources=vode_src)
config.add_library('dop', sources=dop_src)
# Extensions
# quadpack:
include_dirs = [join(os.path.dirname(__file__), '..', '_lib', 'src')]
if 'include_dirs' in lapack_opt:
lapack_opt = dict(lapack_opt)
include_dirs.extend(lapack_opt.pop('include_dirs'))
config.add_extension('_quadpack',
sources=['_quadpackmodule.c'],
libraries=['quadpack', 'mach'] + lapack_libs,
depends=(['__quadpack.h']
+ quadpack_src + mach_src),
include_dirs=include_dirs,
**lapack_opt)
# odepack/lsoda-odeint
odepack_opts = lapack_opt.copy()
odepack_opts.update(numpy_nodepr_api)
config.add_extension('_odepack',
sources=['_odepackmodule.c'],
libraries=['lsoda', 'mach'] + lapack_libs,
depends=(lsoda_src + mach_src),
**odepack_opts)
# vode
config.add_extension('vode',
sources=['vode.pyf'],
libraries=['vode'] + lapack_libs,
depends=vode_src,
**lapack_opt)
# lsoda
config.add_extension('lsoda',
sources=['lsoda.pyf'],
libraries=['lsoda', 'mach'] + lapack_libs,
depends=(lsoda_src + mach_src),
**lapack_opt)
# dop
config.add_extension('_dop',
sources=['dop.pyf'],
libraries=['dop'],
depends=dop_src)
config.add_extension('_test_multivariate',
sources=quadpack_test_src)
# Fortran+f2py extension module for testing odeint.
config.add_extension('_test_odeint_banded',
sources=odeint_banded_test_src,
libraries=['lsoda', 'mach'] + lapack_libs,
depends=(lsoda_src + mach_src),
**lapack_opt)
config.add_subpackage('_ivp')
config.add_data_dir('tests')
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration
from scipy._build_utils.system_info import get_info
from scipy._build_utils import (gfortran_legacy_flag_hook,
blas_ilp64_pre_build_hook, combine_dict,
uses_blas64, get_f2py_int64_options)
from scipy._build_utils.compiler_helper import (
set_cxx_flags_hook, set_cxx_flags_clib_hook, set_c_flags_hook)
config = Configuration('optimize', parent_package, top_path)
include_dirs = [join(os.path.dirname(__file__), '..', '_lib', 'src')]
minpack_src = [join('minpack', '*f')]
config.add_library('minpack', sources=minpack_src)
config.add_extension('_minpack',
sources=['_minpackmodule.c'],
libraries=['minpack'],
depends=(["minpack.h", "__minpack.h"] + minpack_src),
include_dirs=include_dirs,
**numpy_nodepr_api)
config.add_library('rectangular_lsap',
sources='rectangular_lsap/rectangular_lsap.cpp',
headers='rectangular_lsap/rectangular_lsap.h',
_pre_build_hook=set_cxx_flags_clib_hook)
_lsap = config.add_extension(
'_lsap_module',
sources=['_lsap_module.c'],
libraries=['rectangular_lsap'],
depends=(['rectangular_lsap/rectangular_lsap.cpp',
'rectangular_lsap/rectangular_lsap.h']),
include_dirs=include_dirs,
**numpy_nodepr_api)
_lsap._pre_build_hook = set_c_flags_hook
rootfind_src = [join('Zeros', '*.c')]
rootfind_hdr = [join('Zeros', 'zeros.h')]
config.add_library('rootfind',
sources=rootfind_src,
headers=rootfind_hdr, **numpy_nodepr_api)
config.add_extension('_zeros',
sources=['zeros.c'],
libraries=['rootfind'],
depends=(rootfind_src + rootfind_hdr),
**numpy_nodepr_api)
if uses_blas64():
lapack = get_info('lapack_ilp64_opt')
f2py_options = get_f2py_int64_options()
pre_build_hook = blas_ilp64_pre_build_hook(lapack)
else:
lapack = get_info('lapack_opt')
f2py_options = None
pre_build_hook = None
lapack = combine_dict(lapack, numpy_nodepr_api)
sources = ['lbfgsb.pyf', 'lbfgsb.f', 'linpack.f', 'timer.f']
ext = config.add_extension('_lbfgsb',
sources=[join('lbfgsb_src', x)
for x in sources],
f2py_options=f2py_options,
**lapack)
ext._pre_build_hook = pre_build_hook
sources = ['moduleTNC.c', 'tnc.c']
config.add_extension('moduleTNC',
sources=[join('tnc', x) for x in sources],
depends=[join('tnc', 'tnc.h')],
**numpy_nodepr_api)
config.add_extension('_cobyla',
sources=[join('cobyla', x) for x in [
'cobyla.pyf', 'cobyla2.f', 'trstlp.f']],
**numpy_nodepr_api)
sources = ['minpack2.pyf', 'dcsrch.f', 'dcstep.f']
config.add_extension('minpack2',
sources=[join('minpack2', x) for x in sources],
**numpy_nodepr_api)
sources = ['slsqp.pyf', 'slsqp_optmz.f']
ext = config.add_extension('_slsqp', sources=[
join('slsqp', x) for x in sources], **numpy_nodepr_api)
ext._pre_build_hook = gfortran_legacy_flag_hook
config.add_data_files('__nnls.pyi')
ext = config.add_extension('__nnls', sources=[
join('__nnls', x) for x in ["nnls.f", "nnls.pyf"]], **numpy_nodepr_api)
ext._pre_build_hook = gfortran_legacy_flag_hook
config.add_extension('_group_columns', sources=['_group_columns.c'],)
config.add_extension('_bglu_dense', sources=['_bglu_dense.c'])
config.add_subpackage('_lsq')
config.add_subpackage('_trlib')
config.add_subpackage('_trustregion_constr')
# Cython optimize API for zeros functions
config.add_subpackage('cython_optimize')
config.add_data_files('cython_optimize.pxd')
config.add_data_files(os.path.join('cython_optimize', '*.pxd'))
config.add_extension(
'cython_optimize._zeros',
sources=[os.path.join('cython_optimize', '_zeros.c')])
config.add_subpackage('_shgo_lib')
config.add_data_dir('_shgo_lib')
# HiGHS linear programming libraries and extensions
config.add_subpackage('_highs')
config.add_data_files(os.path.join('_highs', 'cython', 'src', '*.pxd'))
config.add_data_dir('tests')
# Add license files
config.add_data_files('lbfgsb_src/README')
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
from numpy.distutils.misc_util import get_info as get_misc_info
from scipy._build_utils.system_info import get_info
from scipy._build_utils import combine_dict, uses_blas64, numpy_nodepr_api
from scipy._build_utils.compiler_helper import set_cxx_flags_hook
from distutils.sysconfig import get_python_inc
import pybind11
config = Configuration('spatial', parent_package, top_path)
# spatial.transform
config.add_subpackage('transform')
# qhull
qhull_src = sorted(
glob.glob(join(dirname(__file__), 'qhull_src', 'src', '*.c')))
inc_dirs = [get_python_inc()]
if inc_dirs[0] != get_python_inc(plat_specific=1):
inc_dirs.append(get_python_inc(plat_specific=1))
inc_dirs.append(get_numpy_include_dirs())
inc_dirs.append(join(dirname(dirname(__file__)), '_lib'))
inc_dirs.append(join(dirname(dirname(__file__)), '_build_utils', 'src'))
if uses_blas64():
lapack_opt = get_info('lapack_ilp64_opt')
else:
lapack_opt = get_info('lapack_opt')
cfg = combine_dict(lapack_opt, include_dirs=inc_dirs)
config.add_extension('qhull',
sources=['qhull.c', 'qhull_misc.c'] + qhull_src,
**cfg)
# cKDTree
ckdtree_src = [
'query.cxx', 'build.cxx', 'query_pairs.cxx', 'count_neighbors.cxx',
'query_ball_point.cxx', 'query_ball_tree.cxx', 'sparse_distances.cxx'
]
ckdtree_src = [join('ckdtree', 'src', x) for x in ckdtree_src]
ckdtree_headers = [
'ckdtree_decl.h', 'coo_entries.h', 'distance_base.h', 'distance.h',
'ordered_pair.h', 'partial_sort.h', 'rectangle.h'
]
ckdtree_headers = [join('ckdtree', 'src', x) for x in ckdtree_headers]
ckdtree_dep = ['ckdtree.cxx'] + ckdtree_headers + ckdtree_src
ext = config.add_extension('ckdtree',
sources=['ckdtree.cxx'] + ckdtree_src,
depends=ckdtree_dep,
include_dirs=inc_dirs +
[join('ckdtree', 'src')])
ext._pre_build_hook = set_cxx_flags_hook
# _distance_wrap
config.add_extension('_distance_wrap',
sources=[join('src', 'distance_wrap.c')],
depends=[join('src', 'distance_impl.h')],
include_dirs=[
get_numpy_include_dirs(),
join(dirname(dirname(__file__)), '_lib')
],
extra_info=get_misc_info("npymath"))
distance_pybind_includes = [
pybind11.get_include(True),
pybind11.get_include(False),
get_numpy_include_dirs()
]
ext = config.add_extension('_distance_pybind',
sources=[join('src', 'distance_pybind.cpp')],
depends=[
join('src', 'function_ref.h'),
join('src', 'views.h'),
join('src', 'distance_metrics.h')
],
include_dirs=distance_pybind_includes,
language='c++',
**numpy_nodepr_api)
ext._pre_build_hook = pre_build_hook
config.add_extension('_voronoi', sources=['_voronoi.c'])
config.add_extension('_hausdorff', sources=['_hausdorff.c'])
# Add license files
config.add_data_files('qhull_src/COPYING.txt')
# Type stubs
config.add_data_files('*.pyi')
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration
from scipy._build_utils.system_info import get_info
config = Configuration('optimize', parent_package, top_path)
include_dirs = [join(os.path.dirname(__file__), '..', '_lib', 'src')]
minpack_src = [join('minpack', '*f')]
config.add_library('minpack', sources=minpack_src)
config.add_extension('_minpack',
sources=['_minpackmodule.c'],
libraries=['minpack'],
depends=(["minpack.h", "__minpack.h"] + minpack_src),
include_dirs=include_dirs,
**numpy_nodepr_api)
rootfind_src = [join('Zeros', '*.c')]
rootfind_hdr = [join('Zeros', 'zeros.h')]
config.add_library('rootfind',
sources=rootfind_src,
headers=rootfind_hdr,
**numpy_nodepr_api)
config.add_extension('_zeros',
sources=['zeros.c'],
libraries=['rootfind'],
depends=(rootfind_src + rootfind_hdr),
**numpy_nodepr_api)
lapack = get_info('lapack_opt')
if 'define_macros' in numpy_nodepr_api:
if ('define_macros' in lapack) and (lapack['define_macros']
is not None):
lapack['define_macros'] = (lapack['define_macros'] +
numpy_nodepr_api['define_macros'])
else:
lapack['define_macros'] = numpy_nodepr_api['define_macros']
sources = ['lbfgsb.pyf', 'lbfgsb.f', 'linpack.f', 'timer.f']
config.add_extension('_lbfgsb',
sources=[join('lbfgsb_src', x) for x in sources],
**lapack)
sources = ['moduleTNC.c', 'tnc.c']
config.add_extension('moduleTNC',
sources=[join('tnc', x) for x in sources],
depends=[join('tnc', 'tnc.h')],
**numpy_nodepr_api)
config.add_extension('_cobyla',
sources=[
join('cobyla', x)
for x in ['cobyla.pyf', 'cobyla2.f', 'trstlp.f']
],
**numpy_nodepr_api)
sources = ['minpack2.pyf', 'dcsrch.f', 'dcstep.f']
config.add_extension('minpack2',
sources=[join('minpack2', x) for x in sources],
**numpy_nodepr_api)
sources = ['slsqp.pyf', 'slsqp_optmz.f']
config.add_extension('_slsqp',
sources=[join('slsqp', x) for x in sources],
**numpy_nodepr_api)
config.add_extension(
'_nnls',
sources=[join('nnls', x) for x in ["nnls.f", "nnls.pyf"]],
**numpy_nodepr_api)
config.add_extension(
'_group_columns',
sources=['_group_columns.c'],
)
config.add_extension('_bglu_dense', sources=['_bglu_dense.c'])
config.add_subpackage('_lsq')
config.add_subpackage('_trlib')
config.add_subpackage('_trustregion_constr')
config.add_subpackage('_shgo_lib')
config.add_data_dir('_shgo_lib')
config.add_data_dir('tests')
# Add license files
config.add_data_files('lbfgsb_src/README')
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration
from scipy._build_utils.system_info import get_info
from scipy._build_utils import (uses_blas64, blas_ilp64_pre_build_hook,
combine_dict, get_f2py_int64_options)
config = Configuration('integrate', parent_package, top_path)
if uses_blas64():
lapack_opt = get_info('lapack_ilp64_opt', 2)
pre_build_hook = blas_ilp64_pre_build_hook(lapack_opt)
f2py_options = get_f2py_int64_options()
else:
lapack_opt = get_info('lapack_opt')
pre_build_hook = None
f2py_options = None
mach_src = [join('mach', '*.f')]
quadpack_src = [join('quadpack', '*.f')]
lsoda_src = [
join('odepack', fn) for fn in [
'blkdta000.f', 'bnorm.f', 'cfode.f', 'ewset.f', 'fnorm.f',
'intdy.f', 'lsoda.f', 'prja.f', 'solsy.f', 'srcma.f', 'stoda.f',
'vmnorm.f', 'xerrwv.f', 'xsetf.f', 'xsetun.f'
]
]
vode_src = [join('odepack', 'vode.f'), join('odepack', 'zvode.f')]
dop_src = [join('dop', '*.f')]
config.add_library('mach',
sources=mach_src,
config_fc={'noopt': (__file__, 1)},
_pre_build_hook=pre_build_hook)
config.add_library('quadpack',
sources=quadpack_src,
_pre_build_hook=pre_build_hook)
config.add_library('lsoda',
sources=lsoda_src,
_pre_build_hook=pre_build_hook)
config.add_library('vode',
sources=vode_src,
_pre_build_hook=pre_build_hook)
config.add_library('dop', sources=dop_src, _pre_build_hook=pre_build_hook)
# Extensions
# quadpack:
include_dirs = [join(os.path.dirname(__file__), '..', '_lib', 'src')]
cfg = combine_dict(lapack_opt,
include_dirs=include_dirs,
libraries=['quadpack', 'mach'])
config.add_extension('_quadpack',
sources=['_quadpackmodule.c'],
depends=(['__quadpack.h'] + quadpack_src + mach_src),
**cfg)
# odepack/lsoda-odeint
cfg = combine_dict(lapack_opt,
numpy_nodepr_api,
libraries=['lsoda', 'mach'])
config.add_extension('_odepack',
sources=['_odepackmodule.c'],
depends=(lsoda_src + mach_src),
**cfg)
# vode
cfg = combine_dict(lapack_opt, libraries=['vode'])
ext = config.add_extension('vode',
sources=['vode.pyf'],
depends=vode_src,
f2py_options=f2py_options,
**cfg)
ext._pre_build_hook = pre_build_hook
# lsoda
cfg = combine_dict(lapack_opt, libraries=['lsoda', 'mach'])
ext = config.add_extension('lsoda',
sources=['lsoda.pyf'],
depends=(lsoda_src + mach_src),
f2py_options=f2py_options,
**cfg)
ext._pre_build_hook = pre_build_hook
# dop
ext = config.add_extension('_dop',
sources=['dop.pyf'],
libraries=['dop'],
depends=dop_src,
f2py_options=f2py_options)
ext._pre_build_hook = pre_build_hook
config.add_subpackage('_ivp')
return config
def configuration(parent_package='', top_path=None):
from distutils.sysconfig import get_python_inc
from scipy._build_utils.system_info import get_info, numpy_info
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
from scipy._build_utils import (get_g77_abi_wrappers,
gfortran_legacy_flag_hook,
blas_ilp64_pre_build_hook,
get_f2py_int64_options, uses_blas64)
config = Configuration('linalg', parent_package, top_path)
lapack_opt = get_info('lapack_opt')
atlas_version = ([
v[3:-3]
for k, v in lapack_opt.get('define_macros', []) if k == 'ATLAS_INFO'
] + [None])[0]
if atlas_version:
print(('ATLAS version: %s' % atlas_version))
if uses_blas64():
lapack_ilp64_opt = get_info('lapack_ilp64_opt', 2)
# fblas:
sources = ['fblas.pyf.src']
sources += get_g77_abi_wrappers(lapack_opt)
depends = ['fblas_l?.pyf.src']
config.add_extension('_fblas',
sources=sources,
depends=depends,
extra_info=lapack_opt)
if uses_blas64():
sources = ['fblas_64.pyf.src'] + sources[1:]
ext = config.add_extension('_fblas_64',
sources=sources,
depends=depends,
f2py_options=get_f2py_int64_options(),
extra_info=lapack_ilp64_opt)
ext._pre_build_hook = blas_ilp64_pre_build_hook(lapack_ilp64_opt)
# flapack:
sources = ['flapack.pyf.src']
sources += get_g77_abi_wrappers(lapack_opt)
depends = [
'flapack_gen.pyf.src', 'flapack_gen_banded.pyf.src',
'flapack_gen_tri.pyf.src', 'flapack_pos_def.pyf.src',
'flapack_pos_def_tri.pyf.src', 'flapack_sym_herm.pyf.src',
'flapack_other.pyf.src', 'flapack_user.pyf.src'
]
config.add_extension('_flapack',
sources=sources,
depends=depends,
extra_info=lapack_opt)
if uses_blas64():
sources = ['flapack_64.pyf.src'] + sources[1:]
ext = config.add_extension('_flapack_64',
sources=sources,
depends=depends,
f2py_options=get_f2py_int64_options(),
extra_info=lapack_ilp64_opt)
ext._pre_build_hook = blas_ilp64_pre_build_hook(lapack_ilp64_opt)
if atlas_version is not None:
# cblas:
config.add_extension('_cblas',
sources=['cblas.pyf.src'],
depends=['cblas.pyf.src', 'cblas_l1.pyf.src'],
extra_info=lapack_opt)
# clapack:
config.add_extension('_clapack',
sources=['clapack.pyf.src'],
depends=['clapack.pyf.src'],
extra_info=lapack_opt)
# _flinalg:
config.add_extension('_flinalg',
sources=[join('src', 'det.f'),
join('src', 'lu.f')],
extra_info=lapack_opt)
# _interpolative:
ext = config.add_extension(
'_interpolative',
sources=[join('src', 'id_dist', 'src', '*.f'), "interpolative.pyf"],
extra_info=lapack_opt)
ext._pre_build_hook = gfortran_legacy_flag_hook
# _solve_toeplitz:
config.add_extension('_solve_toeplitz',
sources=[('_solve_toeplitz.c')],
include_dirs=[get_numpy_include_dirs()])
# _matfuncs_sqrtm_triu:
if int(os.environ.get('SCIPY_USE_PYTHRAN', 1)):
import pythran
ext = pythran.dist.PythranExtension(
'scipy.linalg._matfuncs_sqrtm_triu',
sources=["scipy/linalg/_matfuncs_sqrtm_triu.py"],
config=['compiler.blas=none'])
config.ext_modules.append(ext)
else:
config.add_extension('_matfuncs_sqrtm_triu',
sources=[('_matfuncs_sqrtm_triu.c')],
include_dirs=[get_numpy_include_dirs()])
config.add_data_dir('tests')
# Cython BLAS/LAPACK
config.add_data_files('cython_blas.pxd')
config.add_data_files('cython_lapack.pxd')
sources = ['_blas_subroutine_wrappers.f', '_lapack_subroutine_wrappers.f']
sources += get_g77_abi_wrappers(lapack_opt)
includes = numpy_info().get_include_dirs() + [get_python_inc()]
config.add_library('fwrappers', sources=sources, include_dirs=includes)
config.add_extension('cython_blas',
sources=['cython_blas.c'],
depends=[
'cython_blas.pyx', 'cython_blas.pxd',
'fortran_defs.h', '_blas_subroutines.h'
],
include_dirs=['.'],
libraries=['fwrappers'],
extra_info=lapack_opt)
config.add_extension('cython_lapack',
sources=['cython_lapack.c'],
depends=[
'cython_lapack.pyx', 'cython_lapack.pxd',
'fortran_defs.h', '_lapack_subroutines.h'
],
include_dirs=['.'],
libraries=['fwrappers'],
extra_info=lapack_opt)
config.add_extension('_decomp_update', sources=['_decomp_update.c'])
config.add_data_files('_cythonized_array_utils.pxd')
config.add_extension(
'_cythonized_array_utils',
sources=['_cythonized_array_utils.c'],
depends=['_cythonized_array_utils.pyx', '_cythonized_array_utils.pxd'],
include_dirs=['.'])
config.add_extension('_matfuncs_expm', sources=['_matfuncs_expm.c'])
# Add any license files
config.add_data_files('src/id_dist/doc/doc.tex')
config.add_data_files('src/lapack_deprecations/LICENSE')
# Type stubs
config.add_data_files('*.pyi')
return config
def configuration(parent_package='', top_path=None):
from distutils.sysconfig import get_python_inc
from scipy._build_utils.system_info import get_info, NotFoundError, numpy_info
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
from scipy._build_utils import (get_g77_abi_wrappers, split_fortran_files)
config = Configuration('linalg', parent_package, top_path)
lapack_opt = get_info('lapack_opt')
atlas_version = ([v[3:-3] for k, v in lapack_opt.get('define_macros', [])
if k == 'ATLAS_INFO']+[None])[0]
if atlas_version:
print(('ATLAS version: %s' % atlas_version))
# fblas:
sources = ['fblas.pyf.src']
sources += get_g77_abi_wrappers(lapack_opt)
config.add_extension('_fblas',
sources=sources,
depends=['fblas_l?.pyf.src'],
extra_info=lapack_opt
)
# flapack:
sources = ['flapack.pyf.src']
sources += get_g77_abi_wrappers(lapack_opt)
dep_pfx = join('src', 'lapack_deprecations')
deprecated_lapack_routines = [join(dep_pfx, c + 'gegv.f') for c in 'cdsz']
sources += deprecated_lapack_routines
config.add_extension('_flapack',
sources=sources,
depends=['flapack_gen.pyf.src',
'flapack_gen_banded.pyf.src',
'flapack_gen_tri.pyf.src',
'flapack_pos_def.pyf.src',
'flapack_pos_def_tri.pyf.src',
'flapack_sym_herm.pyf.src',
'flapack_other.pyf.src',
'flapack_user.pyf.src'],
extra_info=lapack_opt
)
if atlas_version is not None:
# cblas:
config.add_extension('_cblas',
sources=['cblas.pyf.src'],
depends=['cblas.pyf.src', 'cblas_l1.pyf.src'],
extra_info=lapack_opt
)
# clapack:
config.add_extension('_clapack',
sources=['clapack.pyf.src'],
depends=['clapack.pyf.src'],
extra_info=lapack_opt
)
# _flinalg:
config.add_extension('_flinalg',
sources=[join('src', 'det.f'), join('src', 'lu.f')],
extra_info=lapack_opt
)
# _interpolative:
routines_to_split = [
'dfftb1',
'dfftf1',
'dffti1',
'dsint1',
'dzfft1',
'id_srand',
'idd_copyints',
'idd_id2svd0',
'idd_pairsamps',
'idd_permute',
'idd_permuter',
'idd_random_transf0',
'idd_random_transf0_inv',
'idd_random_transf_init0',
'idd_subselect',
'iddp_asvd0',
'iddp_rsvd0',
'iddr_asvd0',
'iddr_rsvd0',
'idz_estrank0',
'idz_id2svd0',
'idz_permute',
'idz_permuter',
'idz_random_transf0_inv',
'idz_random_transf_init0',
'idz_random_transf_init00',
'idz_realcomp',
'idz_realcomplex',
'idz_reco',
'idz_subselect',
'idzp_aid0',
'idzp_aid1',
'idzp_asvd0',
'idzp_rsvd0',
'idzr_asvd0',
'idzr_reco',
'idzr_rsvd0',
'zfftb1',
'zfftf1',
'zffti1',
]
print('Splitting linalg.interpolative Fortran source files')
dirname = os.path.split(os.path.abspath(__file__))[0]
fnames = split_fortran_files(join(dirname, 'src', 'id_dist', 'src'),
routines_to_split)
fnames = [join('src', 'id_dist', 'src', f) for f in fnames]
config.add_extension('_interpolative', fnames + ["interpolative.pyf"],
extra_info=lapack_opt
)
# _solve_toeplitz:
config.add_extension('_solve_toeplitz',
sources=[('_solve_toeplitz.c')],
include_dirs=[get_numpy_include_dirs()])
config.add_data_dir('tests')
# Cython BLAS/LAPACK
config.add_data_files('cython_blas.pxd')
config.add_data_files('cython_lapack.pxd')
sources = ['_blas_subroutine_wrappers.f', '_lapack_subroutine_wrappers.f']
sources += get_g77_abi_wrappers(lapack_opt)
includes = numpy_info().get_include_dirs() + [get_python_inc()]
config.add_library('fwrappers', sources=sources, include_dirs=includes)
config.add_extension('cython_blas',
sources=['cython_blas.c'],
depends=['cython_blas.pyx', 'cython_blas.pxd',
'fortran_defs.h', '_blas_subroutines.h'],
include_dirs=['.'],
libraries=['fwrappers'],
extra_info=lapack_opt)
config.add_extension('cython_lapack',
sources=['cython_lapack.c'],
depends=['cython_lapack.pyx', 'cython_lapack.pxd',
'fortran_defs.h', '_lapack_subroutines.h'],
include_dirs=['.'],
libraries=['fwrappers'],
extra_info=lapack_opt)
config.add_extension('_decomp_update',
sources=['_decomp_update.c'])
# Add any license files
config.add_data_files('src/id_dist/doc/doc.tex')
config.add_data_files('src/lapack_deprecations/LICENSE')
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration
from scipy._build_utils.system_info import get_info
config = Configuration('integrate', parent_package, top_path)
# Get a local copy of lapack_opt_info
lapack_opt = dict(get_info('lapack_opt', notfound_action=2))
# Pop off the libraries list so it can be combined with
# additional required libraries
lapack_libs = lapack_opt.pop('libraries', [])
mach_src = [join('mach', '*.f')]
quadpack_src = [join('quadpack', '*.f')]
lsoda_src = [
join('odepack', fn) for fn in [
'blkdta000.f', 'bnorm.f', 'cfode.f', 'ewset.f', 'fnorm.f',
'intdy.f', 'lsoda.f', 'prja.f', 'solsy.f', 'srcma.f', 'stoda.f',
'vmnorm.f', 'xerrwv.f', 'xsetf.f', 'xsetun.f'
]
]
vode_src = [join('odepack', 'vode.f'), join('odepack', 'zvode.f')]
dop_src = [join('dop', '*.f')]
quadpack_test_src = [join('tests', '_test_multivariate.c')]
odeint_banded_test_src = [join('tests', 'banded5x5.f')]
config.add_library('mach',
sources=mach_src,
config_fc={'noopt': (__file__, 1)})
config.add_library('quadpack', sources=quadpack_src)
config.add_library('lsoda', sources=lsoda_src)
config.add_library('vode', sources=vode_src)
config.add_library('dop', sources=dop_src)
# Extensions
# quadpack:
include_dirs = [join(os.path.dirname(__file__), '..', '_lib', 'src')]
if 'include_dirs' in lapack_opt:
lapack_opt = dict(lapack_opt)
include_dirs.extend(lapack_opt.pop('include_dirs'))
config.add_extension('_quadpack',
sources=['_quadpackmodule.c'],
libraries=['quadpack', 'mach'] + lapack_libs,
depends=(['__quadpack.h'] + quadpack_src + mach_src),
include_dirs=include_dirs,
**lapack_opt)
# odepack/lsoda-odeint
odepack_opts = lapack_opt.copy()
odepack_opts.update(numpy_nodepr_api)
config.add_extension('_odepack',
sources=['_odepackmodule.c'],
libraries=['lsoda', 'mach'] + lapack_libs,
depends=(lsoda_src + mach_src),
**odepack_opts)
# vode
config.add_extension('vode',
sources=['vode.pyf'],
libraries=['vode'] + lapack_libs,
depends=vode_src,
**lapack_opt)
# lsoda
config.add_extension('lsoda',
sources=['lsoda.pyf'],
libraries=['lsoda', 'mach'] + lapack_libs,
depends=(lsoda_src + mach_src),
**lapack_opt)
# dop
config.add_extension('_dop',
sources=['dop.pyf'],
libraries=['dop'],
depends=dop_src)
config.add_extension('_test_multivariate', sources=quadpack_test_src)
# Fortran+f2py extension module for testing odeint.
config.add_extension('_test_odeint_banded',
sources=odeint_banded_test_src,
libraries=['lsoda', 'mach'] + lapack_libs,
depends=(lsoda_src + mach_src),
**lapack_opt)
config.add_subpackage('_ivp')
config.add_data_dir('tests')
return config
def configuration(parent_package='',top_path=None):
from numpy.distutils.misc_util import Configuration
from scipy._build_utils.system_info import get_info
config = Configuration('optimize',parent_package, top_path)
include_dirs = [join(os.path.dirname(__file__), '..', '_lib', 'src')]
minpack_src = [join('minpack','*f')]
config.add_library('minpack',sources=minpack_src)
config.add_extension('_minpack',
sources=['_minpackmodule.c'],
libraries=['minpack'],
depends=(["minpack.h","__minpack.h"]
+ minpack_src),
include_dirs=include_dirs,
**numpy_nodepr_api)
rootfind_src = [join('Zeros','*.c')]
rootfind_hdr = [join('Zeros','zeros.h')]
config.add_library('rootfind',
sources=rootfind_src,
headers=rootfind_hdr,
**numpy_nodepr_api)
config.add_extension('_zeros',
sources=['zeros.c'],
libraries=['rootfind'],
depends=(rootfind_src + rootfind_hdr),
**numpy_nodepr_api)
lapack = get_info('lapack_opt')
if 'define_macros' in numpy_nodepr_api:
if ('define_macros' in lapack) and (lapack['define_macros'] is not None):
lapack['define_macros'] = (lapack['define_macros'] +
numpy_nodepr_api['define_macros'])
else:
lapack['define_macros'] = numpy_nodepr_api['define_macros']
sources = ['lbfgsb.pyf', 'lbfgsb.f', 'linpack.f', 'timer.f']
config.add_extension('_lbfgsb',
sources=[join('lbfgsb_src',x) for x in sources],
**lapack)
sources = ['moduleTNC.c','tnc.c']
config.add_extension('moduleTNC',
sources=[join('tnc',x) for x in sources],
depends=[join('tnc','tnc.h')],
**numpy_nodepr_api)
config.add_extension('_cobyla',
sources=[join('cobyla',x) for x in ['cobyla.pyf',
'cobyla2.f',
'trstlp.f']],
**numpy_nodepr_api)
sources = ['minpack2.pyf', 'dcsrch.f', 'dcstep.f']
config.add_extension('minpack2',
sources=[join('minpack2',x) for x in sources],
**numpy_nodepr_api)
sources = ['slsqp.pyf', 'slsqp_optmz.f']
config.add_extension('_slsqp', sources=[join('slsqp', x) for x in sources],
**numpy_nodepr_api)
config.add_extension('_nnls', sources=[join('nnls', x)
for x in ["nnls.f","nnls.pyf"]],
**numpy_nodepr_api)
config.add_extension('_group_columns', sources=['_group_columns.c'],)
config.add_subpackage('_lsq')
config.add_subpackage('_trlib')
config.add_subpackage('_trustregion_constr')
config.add_subpackage('_shgo_lib')
config.add_data_dir('_shgo_lib')
config.add_data_dir('tests')
# Add license files
config.add_data_files('lbfgsb_src/README')
return config
def configuration(parent_package='', top_path=None):
from distutils.sysconfig import get_python_inc
from scipy._build_utils.system_info import get_info, NotFoundError, numpy_info
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
from scipy._build_utils import (get_g77_abi_wrappers, split_fortran_files)
config = Configuration('linalg', parent_package, top_path)
lapack_opt = get_info('lapack_opt')
atlas_version = ([
v[3:-3]
for k, v in lapack_opt.get('define_macros', []) if k == 'ATLAS_INFO'
] + [None])[0]
if atlas_version:
print(('ATLAS version: %s' % atlas_version))
# fblas:
sources = ['fblas.pyf.src']
sources += get_g77_abi_wrappers(lapack_opt)
config.add_extension('_fblas',
sources=sources,
depends=['fblas_l?.pyf.src'],
extra_info=lapack_opt)
# flapack:
sources = ['flapack.pyf.src']
sources += get_g77_abi_wrappers(lapack_opt)
dep_pfx = join('src', 'lapack_deprecations')
deprecated_lapack_routines = [join(dep_pfx, c + 'gegv.f') for c in 'cdsz']
sources += deprecated_lapack_routines
config.add_extension(
'_flapack',
sources=sources,
depends=[
'flapack_gen.pyf.src', 'flapack_gen_banded.pyf.src',
'flapack_gen_tri.pyf.src', 'flapack_pos_def.pyf.src',
'flapack_pos_def_tri.pyf.src', 'flapack_sym_herm.pyf.src',
'flapack_other.pyf.src', 'flapack_user.pyf.src'
],
extra_info=lapack_opt)
if atlas_version is not None:
# cblas:
config.add_extension('_cblas',
sources=['cblas.pyf.src'],
depends=['cblas.pyf.src', 'cblas_l1.pyf.src'],
extra_info=lapack_opt)
# clapack:
config.add_extension('_clapack',
sources=['clapack.pyf.src'],
depends=['clapack.pyf.src'],
extra_info=lapack_opt)
# _flinalg:
config.add_extension('_flinalg',
sources=[join('src', 'det.f'),
join('src', 'lu.f')],
extra_info=lapack_opt)
# _interpolative:
routines_to_split = [
'dfftb1',
'dfftf1',
'dffti1',
'dsint1',
'dzfft1',
'id_srand',
'idd_copyints',
'idd_id2svd0',
'idd_pairsamps',
'idd_permute',
'idd_permuter',
'idd_random_transf0',
'idd_random_transf0_inv',
'idd_random_transf_init0',
'idd_sfft1',
'idd_sffti1',
'idd_subselect',
'iddp_asvd0',
'iddp_rsvd0',
'iddr_asvd0',
'iddr_rsvd0',
'idz_estrank0',
'idz_id2svd0',
'idz_permute',
'idz_permuter',
'idz_random_transf0_inv',
'idz_random_transf_init0',
'idz_random_transf_init00',
'idz_realcomp',
'idz_realcomplex',
'idz_reco',
'idz_subselect',
'idzp_aid0',
'idzp_aid1',
'idzp_asvd0',
'idzp_rsvd0',
'idzr_asvd0',
'idzr_reco',
'idzr_rsvd0',
'zfftb1',
'zfftf1',
'zffti1',
]
print('Splitting linalg.interpolative Fortran source files')
dirname = os.path.split(os.path.abspath(__file__))[0]
fnames = split_fortran_files(join(dirname, 'src', 'id_dist', 'src'),
routines_to_split)
fnames = [join('src', 'id_dist', 'src', f) for f in fnames]
config.add_extension('_interpolative',
fnames + ["interpolative.pyf"],
extra_info=lapack_opt)
# _solve_toeplitz:
config.add_extension('_solve_toeplitz',
sources=[('_solve_toeplitz.c')],
include_dirs=[get_numpy_include_dirs()])
config.add_data_dir('tests')
# Cython BLAS/LAPACK
config.add_data_files('cython_blas.pxd')
config.add_data_files('cython_lapack.pxd')
sources = ['_blas_subroutine_wrappers.f', '_lapack_subroutine_wrappers.f']
sources += get_g77_abi_wrappers(lapack_opt)
includes = numpy_info().get_include_dirs() + [get_python_inc()]
config.add_library('fwrappers', sources=sources, include_dirs=includes)
config.add_extension('cython_blas',
sources=['cython_blas.c'],
depends=[
'cython_blas.pyx', 'cython_blas.pxd',
'fortran_defs.h', '_blas_subroutines.h'
],
include_dirs=['.'],
libraries=['fwrappers'],
extra_info=lapack_opt)
config.add_extension('cython_lapack',
sources=['cython_lapack.c'],
depends=[
'cython_lapack.pyx', 'cython_lapack.pxd',
'fortran_defs.h', '_lapack_subroutines.h'
],
include_dirs=['.'],
libraries=['fwrappers'],
extra_info=lapack_opt)
config.add_extension('_decomp_update', sources=['_decomp_update.c'])
# Add any license files
config.add_data_files('src/id_dist/doc/doc.tex')
config.add_data_files('src/lapack_deprecations/LICENSE')
return config
def configuration(parent_package='', top_path=None):
from distutils.sysconfig import get_python_inc
from scipy._build_utils.system_info import get_info, numpy_info
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
from scipy._build_utils import get_g77_abi_wrappers
config = Configuration('linalg', parent_package, top_path)
lapack_opt = get_info('lapack_opt')
atlas_version = ([
v[3:-3]
for k, v in lapack_opt.get('define_macros', []) if k == 'ATLAS_INFO'
] + [None])[0]
if atlas_version:
print(('ATLAS version: %s' % atlas_version))
# fblas:
sources = ['fblas.pyf.src']
sources += get_g77_abi_wrappers(lapack_opt)
config.add_extension('_fblas',
sources=sources,
depends=['fblas_l?.pyf.src'],
extra_info=lapack_opt)
# flapack:
sources = ['flapack.pyf.src']
sources += get_g77_abi_wrappers(lapack_opt)
dep_pfx = join('src', 'lapack_deprecations')
deprecated_lapack_routines = [join(dep_pfx, c + 'gegv.f') for c in 'cdsz']
sources += deprecated_lapack_routines
config.add_extension(
'_flapack',
sources=sources,
depends=[
'flapack_gen.pyf.src', 'flapack_gen_banded.pyf.src',
'flapack_gen_tri.pyf.src', 'flapack_pos_def.pyf.src',
'flapack_pos_def_tri.pyf.src', 'flapack_sym_herm.pyf.src',
'flapack_other.pyf.src', 'flapack_user.pyf.src'
],
extra_info=lapack_opt)
if atlas_version is not None:
# cblas:
config.add_extension('_cblas',
sources=['cblas.pyf.src'],
depends=['cblas.pyf.src', 'cblas_l1.pyf.src'],
extra_info=lapack_opt)
# clapack:
config.add_extension('_clapack',
sources=['clapack.pyf.src'],
depends=['clapack.pyf.src'],
extra_info=lapack_opt)
# _flinalg:
config.add_extension('_flinalg',
sources=[join('src', 'det.f'),
join('src', 'lu.f')],
extra_info=lapack_opt)
# _interpolative:
config.add_extension(
'_interpolative',
sources=[join('src', 'id_dist', 'src', '*.f'), "interpolative.pyf"],
extra_info=lapack_opt)
# _solve_toeplitz:
config.add_extension('_solve_toeplitz',
sources=[('_solve_toeplitz.c')],
include_dirs=[get_numpy_include_dirs()])
config.add_data_dir('tests')
# Cython BLAS/LAPACK
config.add_data_files('cython_blas.pxd')
config.add_data_files('cython_lapack.pxd')
sources = ['_blas_subroutine_wrappers.f', '_lapack_subroutine_wrappers.f']
sources += get_g77_abi_wrappers(lapack_opt)
includes = numpy_info().get_include_dirs() + [get_python_inc()]
config.add_library('fwrappers', sources=sources, include_dirs=includes)
config.add_extension('cython_blas',
sources=['cython_blas.c'],
depends=[
'cython_blas.pyx', 'cython_blas.pxd',
'fortran_defs.h', '_blas_subroutines.h'
],
include_dirs=['.'],
libraries=['fwrappers'],
extra_info=lapack_opt)
config.add_extension('cython_lapack',
sources=['cython_lapack.c'],
depends=[
'cython_lapack.pyx', 'cython_lapack.pxd',
'fortran_defs.h', '_lapack_subroutines.h'
],
include_dirs=['.'],
libraries=['fwrappers'],
extra_info=lapack_opt)
config.add_extension('_decomp_update', sources=['_decomp_update.c'])
# Add any license files
config.add_data_files('src/id_dist/doc/doc.tex')
config.add_data_files('src/lapack_deprecations/LICENSE')
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration
from scipy._build_utils.system_info import get_info
from scipy._build_utils import (gfortran_legacy_flag_hook,
blas_ilp64_pre_build_hook, combine_dict,
uses_blas64, get_f2py_int64_options)
from scipy._build_utils.compiler_helper import (set_cxx_flags_clib_hook,
set_c_flags_hook)
from distutils.sysconfig import get_python_inc
config = Configuration('optimize', parent_package, top_path)
include_dirs = [join(os.path.dirname(__file__), '..', '_lib', 'src')]
minpack_src = [join('minpack', '*f')]
config.add_library('minpack', sources=minpack_src)
config.add_extension('_minpack',
sources=['_minpackmodule.c'],
libraries=['minpack'],
depends=(["minpack.h", "__minpack.h"] + minpack_src),
include_dirs=include_dirs,
**numpy_nodepr_api)
config.add_library('rectangular_lsap',
sources='rectangular_lsap/rectangular_lsap.cpp',
headers='rectangular_lsap/rectangular_lsap.h',
_pre_build_hook=set_cxx_flags_clib_hook)
_lsap = config.add_extension('_lsap',
sources=['_lsap.c'],
libraries=['rectangular_lsap'],
depends=([
'rectangular_lsap/rectangular_lsap.cpp',
'rectangular_lsap/rectangular_lsap.h'
]),
include_dirs=include_dirs,
**numpy_nodepr_api)
_lsap._pre_build_hook = set_c_flags_hook
rootfind_src = [join('Zeros', '*.c')]
rootfind_hdr = [join('Zeros', 'zeros.h')]
config.add_library('rootfind',
sources=rootfind_src,
headers=rootfind_hdr,
**numpy_nodepr_api)
config.add_extension('_zeros',
sources=['zeros.c'],
libraries=['rootfind'],
depends=(rootfind_src + rootfind_hdr),
**numpy_nodepr_api)
if uses_blas64():
lapack = get_info('lapack_ilp64_opt')
f2py_options = get_f2py_int64_options()
pre_build_hook = blas_ilp64_pre_build_hook(lapack)
else:
lapack = get_info('lapack_opt')
f2py_options = None
pre_build_hook = None
lapack = combine_dict(lapack, numpy_nodepr_api)
sources = ['lbfgsb.pyf', 'lbfgsb.f', 'linpack.f', 'timer.f']
ext = config.add_extension(
'_lbfgsb',
sources=[join('lbfgsb_src', x) for x in sources],
f2py_options=f2py_options,
**lapack)
ext._pre_build_hook = pre_build_hook
sources = ['_moduleTNC.c', 'tnc.c']
config.add_extension('_moduleTNC',
sources=[join('tnc', x) for x in sources],
depends=[join('tnc', 'tnc.h')],
**numpy_nodepr_api)
config.add_extension('_cobyla',
sources=[
join('cobyla', x)
for x in ['cobyla.pyf', 'cobyla2.f', 'trstlp.f']
],
**numpy_nodepr_api)
sources = ['minpack2.pyf', 'dcsrch.f', 'dcstep.f']
config.add_extension('_minpack2',
sources=[join('minpack2', x) for x in sources],
**numpy_nodepr_api)
sources = ['slsqp.pyf', 'slsqp_optmz.f']
ext = config.add_extension('_slsqp',
sources=[join('slsqp', x) for x in sources],
**numpy_nodepr_api)
ext._pre_build_hook = gfortran_legacy_flag_hook
sources = [
join('_direct', x)
for x in ('direct_wrap.c', 'DIRect.c', 'DIRsubrout.c', 'DIRserial.c')
]
headers = ['_directmodule.h', join('_direct', 'direct-internal.h')]
config.add_library('_direct_lib',
sources=sources,
headers=headers,
include_dirs=[get_python_inc()],
**numpy_nodepr_api)
config.add_extension('_direct',
sources=['_directmodule.c'],
libraries=['_direct_lib'],
depends=(sources + headers),
**numpy_nodepr_api)
config.add_data_files('__nnls.pyi')
ext = config.add_extension(
'__nnls',
sources=[join('__nnls', x) for x in ["nnls.f", "nnls.pyf"]],
**numpy_nodepr_api)
ext._pre_build_hook = gfortran_legacy_flag_hook
if int(os.environ.get('SCIPY_USE_PYTHRAN', 1)):
import pythran
ext = pythran.dist.PythranExtension(
'scipy.optimize._group_columns',
sources=["scipy/optimize/_group_columns.py"],
config=['compiler.blas=none'])
config.ext_modules.append(ext)
else:
config.add_extension(
'_group_columns',
sources=['_group_columns.c'],
)
config.add_extension('_bglu_dense', sources=['_bglu_dense.c'])
config.add_subpackage('_lsq')
config.add_subpackage('_trlib')
config.add_subpackage('_trustregion_constr')
# Cython optimize API for zeros functions
config.add_subpackage('cython_optimize')
config.add_data_files('cython_optimize.pxd')
config.add_subpackage('_shgo_lib')
config.add_data_dir('_shgo_lib')
# HiGHS linear programming libraries and extensions
if 'sdist' not in sys.argv:
# Avoid running this during sdist creation - it makes numpy.distutils
# create an empty cython/src top-level directory.
config.add_subpackage('_highs')
config.add_data_dir('tests')
# Add license files
config.add_data_files('lbfgsb_src/README')
return config
