def SavingAsNpy(CT_list, PET_list, CT_Tr_path, PET_Tr_path, CT_Ts_path, PET_Ts_path, prefix=""):
count_ts = 0
count_tr = 0
for j in range(len(CT_list)):
print(j,'/',len(CT_list)-1)
#print()
if PET_list[0].split('/')[-2] == CT_list[0].split('/')[-2]:
#Save ~30% of patients data in the test files
if j < len(CT_list)*0.3:
CT = sitk.ReadImage(CT_list[j])
dst_CT_name = "CTPET_3D_"+ prefix +'_'+ str(count_ts).zfill(6) + ".nii.gz"
dst_CT_path = os.path.join(CT_Ts_path, dst_CT_name)
sitk.WriteImage(CT,dst_CT_path )
PET = sitk.ReadImage(PET_list[j])
dst_PET_name = "CTPET_3D_"+ prefix +'_'+ str(count_ts).zfill(6) + ".nii.gz"
dst_PET_path = os.path.join(PET_Ts_path, dst_PET_name)
sitk.WriteImage(PET,dst_PET_path )
count_ts += 1
else:
CT = io.imread(CT_list[j], plugin='simpleitk') #CT = np.array(CT)
PET = io.imread(PET_list[j], plugin='simpleitk') #PET = np.array(PET)
CT_path = CT_Tr_path
PET_path = PET_Tr_path
#Saving channel CT & PET images
for k in range(CT.shape[0]):
CT_k = np.array( CT[k,:,:] )
PET_k = np.array( PET[k,:,:] )
dst_img_name = "CTPET_"+ prefix +'_'+ str(count_tr).zfill(6) + ".npy"
dst_img_path = os.path.join(CT_path, dst_img_name)
np.save(dst_img_path, CT_k)
dst_label_name = "CTPET_"+ prefix +'_'+ str(count_tr).zfill(6) + ".npy"
dst_mask_path = os.path.join(PET_path, dst_label_name)
np.save(dst_mask_path, PET_k)
count_tr += 1
return (count_ts, count_tr)
def load_example(self, img_f):
# load the image and the binary mask
X = io.imread(os.path.join(self.path, 'images', img_f))
mask = scipy.io.loadmat(
os.path.join(self.path, 'images',
img_f.replace('.jpg', 'mask.mat')))['BW']
mask = mask[:, :, np.newaxis].astype('float32')
img_centers = self.centers[img_f]
# reduce the size of image and mask by the given amount
H_orig, W_orig = X.shape[0], X.shape[1]
if H_orig != self.out_shape[0] or W_orig != self.out_shape[1]:
X = SkT.resize(X, self.out_shape,
preserve_range=True).astype('uint8')
mask = SkT.resize(mask, self.out_shape,
preserve_range=True).astype('float32')
# compute the density map
density = density_map((H_orig, W_orig),
img_centers,
self.gamma * np.ones((len(img_centers), 2)),
out_shape=self.out_shape)
density = density[:, :, np.newaxis].astype('float32')
return X, mask, density
def mask(self):
roifile = self.roi_folder / self.img_file.with_suffix(".png").name
self.image_mask = io.imread(roifile)
[rows, cols] = np.where(self.image_mask)
row1 = min(rows)
row2 = max(rows)
col1 = min(cols)
col2 = max(cols)
xdiff = row2 - row1
remainder = self.max_mask_x - xdiff
left = remainder // 2
right = remainder - left
ydiff = col2 - col1
remainder = self.max_mask_y - ydiff
top = remainder // 2
bottom = remainder - top
row1 -= left
row2 += right
col1 -= top
col2 += bottom
self.img = self.img[row1:row2, col1:col2, :]
self.image_mask = self.image_mask[row1:row2, col1:col2]
def load_sequence(self, sequence):
"""Load a sequence of images/frames.
Auxiliary function that loads a sequence of frames with
the corresponding ground truth and their filenames.
Returns a dict with the images in [0, 1], their corresponding
labels, their subset (i.e. category, clip, prefix) and their
filenames.
"""
from skimage import io
from PIL import Image
import numpy as np
X = []
Y = []
F = []
for prefix, frame in sequence:
img = io.imread(os.path.join(self.image_path, frame))
img = img.astype(floatX) / 255.
# mask = io.imread(os.path.join(self.mask_path, frame))
mask = Image.open(os.path.join(self.mask_path, frame))
mask = np.array(mask)
mask = mask.astype('int32')
X.append(img)
Y.append(mask)
F.append(frame)
ret = {}
ret['data'] = np.array(X)
ret['labels'] = np.array(Y)
ret['subset'] = prefix
ret['filenames'] = np.array(F)
return ret
def get_minbatch(self, batch_size, time, type='train', augmentation=True):
images = []
labels = []
data_dir_list = os.listdir(self.img_path)
data_index = np.copy(self.validation)
if type == 'train':
data_index = np.copy(self.train)
elif type == 'test':
data_index = np.copy(self.test)
echoe = (len(data_index) - batch_size) // batch_size
start_index = (time % echoe) * batch_size
np.random.seed((time // echoe) + 1)
np.random.shuffle(data_index)
for index in range(start_index, start_index + batch_size, 1):
img_index = data_index[index]
image = io.imread(os.path.join(self.img_path + '/' +
data_dir_list[img_index]),
as_gray=False)
image = resize(image, (self.image_height, self.image_width))
if image.max() > 1:
image = image / 255.
if augmentation and np.random.randint(0, 10) < 5:
image = np.rot90(image, np.random.randint(1, 4))
images.append(image)
labels.append(self.labels[img_index])
return np.array(images), np.reshape(labels, (-1, 1))
def changeObjectImage(self, path):
im = io.imread(path)
self.image = im
# TODO: resize image
im = np.array(im)
image_data = vtk.vtkImageData()
image_array = numpy_support.numpy_to_vtk(
im.ravel(), deep=True, array_type=vtk.VTK_UNSIGNED_CHAR)
image_data.SetDimensions((im.shape[0], im.shape[1], 1))
image_data.SetOrigin([0, 0, 0])
image_data.GetPointData().SetScalars(image_array)
image_filter = vtk.vtkImageDataGeometryFilter()
image_filter.SetInputData(image_data)
image_filter.Update()
image_mapper = vtk.vtkPolyDataMapper()
image_mapper.SetInputConnection(image_filter.GetOutputPort())
image_actor = vtk.vtkActor()
image_actor.SetMapper(image_mapper)
image_actor.GetProperty().SetColor(OBJECT_COLOR)
self.renderer.RemoveActor(self.object)
self.object = image_actor
self.renderer.AddActor(self.object)
def Load_RGB(path, h, w):
img = io.imread(path)
img = color.rgba2rgb(img) # RGB [224, 224, 3]
img = imresize(img, (h, w), interp='bilinear')
return img / 255.0
def to_numpy_array(data_frame=None, image_shape=(224, 224), data_path=None):
"""
Converts the images and store them as numpy array
Args:
image_shape (tuple()): (224,224) or (299,299)
for different networks
data_frame: dataframe with all the metadata
data_path: path to the images
Returns:
data_numpy_array
"""
data_numpy_array = np.zeros((len(data_frame), image_shape[0], image_shape[1], 3))
print('Cropping, resizing and saving as a numpy array')
for index, row in data_frame.iterrows():
if index % 100 == 0:
print(index)
image_path = data_path + row['image_name']
img = io.imread(image_path)
img_crop = img[int(row['ymin']):int(row['ymax']), int(row['xmin']):int(row['xmax']), :3]
img_resize = resize(img_crop, (image_shape[0], image_shape[1]))
data_numpy_array[index] = img_resize
return data_numpy_array
def crowdAI_show(
TRAIN_IMAGES_DIRECTORY=r"D:\work\data\训练数据\遥感目标检测\crowdai\train\train\images",
TRAIN_ANNOTATIONS_PATH=r"D:\work\data\训练数据\遥感目标检测\crowdai\train\train\annotation-small.json"
):
from pycocotools.coco import COCO
import skimage.io as io
import matplotlib.pyplot as plt
import random
import pylab
fig = plt.figure()
pylab.rcParams['figure.figsize'] = (8.0, 10.0)
# TRAIN_ANNOTATIONS_PATH = r"D:\work\data\训练数据\遥感目标检测\crowdai\train\train\annotation.json"
# TRAIN_ANNOTATIONS_SMALL_PATH =
coco = COCO(TRAIN_ANNOTATIONS_PATH)
category_ids = coco.loadCats(coco.getCatIds())
image_ids = coco.getImgIds(catIds=coco.getCatIds())
random_image_id = random.choice(image_ids)
img = coco.loadImgs(random_image_id)[0]
image_path = os.path.join(TRAIN_IMAGES_DIRECTORY, img["file_name"])
I = io.imread(image_path)
annotation_ids = coco.getAnnIds(imgIds=img['id'])
annotations = coco.loadAnns(annotation_ids)
# load and render the image
plt.imshow(I)
plt.axis('off')
# Render annotations on top of the image
coco.showAnns(annotations)
plt.savefig(rf'D:\test\draw_pic\{random_image_id}.png',
bbox_inches='tight',
pad_inches=0)
def load_sequence(self, sequence):
"""Load a sequence of images/frames.
Auxiliary function that loads a sequence of frames with
the corresponding ground truth and their filenames.
Returns a dict with the images in [0, 1], their corresponding
labels, their subset (i.e. category, clip, prefix) and their
filenames.
"""
from skimage import io
from PIL import Image
import numpy as np
X = []
Y = []
F = []
for prefix, frame in sequence:
img = io.imread(os.path.join(self.image_path, frame))
img = img.astype(floatX) / 255.
# mask = io.imread(os.path.join(self.mask_path, frame))
mask = Image.open(os.path.join(self.mask_path, frame))
mask = np.array(mask)
mask = mask.astype('int32')
X.append(img)
Y.append(mask)
F.append(frame)
ret = {}
ret['data'] = np.array(X)
ret['labels'] = np.array(Y)
ret['subset'] = prefix
ret['filenames'] = np.array(F)
return ret
def load_example(self, img_f):
X = io.imread(os.path.join(self.path, img_f))
mask_f = os.path.join(img_f.split(os.sep)[0],
img_f.split(os.sep)[1]) + '-msk.npy'
mask = np.load(os.path.join(self.path, mask_f))
mask = mask[:, :, np.newaxis].astype('float32')
bndboxes = self.bndboxes[img_f]
H_orig, W_orig = X.shape[0], X.shape[1]
# reduce the size of image and mask by the given amount
H_orig, W_orig = X.shape[0], X.shape[1]
if H_orig != self.out_shape[0] or W_orig != self.out_shape[1]:
X = SkT.resize(X, self.out_shape,
preserve_range=True).astype('uint8')
mask = SkT.resize(mask, self.out_shape,
preserve_range=True).astype('float32')
# compute the density map
img_centers = [(int((xmin + xmax) / 2.), int((ymin + ymax) / 2.))
for xmin, ymin, xmax, ymax in bndboxes]
gammas = self.gamma * np.array(
[[1. / np.absolute(xmax - xmin), 1. / np.absolute(ymax - ymin)]
for xmin, ymin, xmax, ymax in bndboxes])
# gammas = self.gamma*np.ones((len(bndboxes), 2))
density = density_map((H_orig, W_orig),
img_centers,
gammas,
out_shape=self.out_shape)
density = density[:, :, np.newaxis].astype('float32')
return X, mask, density
def tiff_to_binary(ops):
nplanes = ops['nplanes']
nchannels = ops['nchannels']
ops1 = []
# open all binary files for writing
reg_file = []
if nchannels > 1:
reg_file_chan2 = []
for j in range(0, nplanes):
fpath = os.path.join(ops['save_path0'], 'suite2p', 'plane%d' % j)
ops['save_path'] = fpath
if ('fast_disk' not in ops) or len(ops['fast_disk']) > 0:
ops['fast_disk'] = ops['save_path0']
ops['fast_disk'] = os.path.join(ops['fast_disk'], 'suite2p',
'plane%d' % j)
ops['ops_path'] = os.path.join(ops['save_path'], 'ops.npy')
ops['reg_file'] = os.path.join(ops['fast_disk'], 'data.bin')
if nchannels > 1:
ops['reg_file_chan2'] = os.path.join(ops['fast_disk'],
'data_chan2.bin')
if not os.path.isdir(ops['fast_disk']):
os.makedirs(ops['fast_disk'])
if not os.path.isdir(ops['save_path']):
os.makedirs(ops['save_path'])
ops1.append(ops.copy())
reg_file.append(open(ops['reg_file'], 'wb'))
if nchannels > 1:
reg_file_chan2.append(open(ops['reg_file_chan2'], 'wb'))
fs, ops = get_tif_list(ops) # look for tiffs in all requested folders
# loop over all tiffs
for ik, file in enumerate(fs):
# keep track of the plane identity of the first frame (channel identity is assumed always 0)
if ops['first_tiffs'][ik]:
iplane = 0
im = io.imread(file)
if len(im.shape) < 3:
im = np.expand_dims(im, axis=0)
nframes = im.shape[0]
for j in range(0, nplanes):
i0 = nchannels * ((iplane + j) % nplanes)
im2write = im[np.arange(int(i0), nframes, nplanes *
nchannels), :, :]
reg_file[j].write(bytearray(im2write))
if nchannels > 1:
im2write = im[
np.arange(int(i0) + 1, nframes, nplanes * nchannels), :, :]
reg_file_chan2[j].write(bytearray(im2write))
iplane = (iplane + nframes / nchannels) % nplanes
# write ops files
for ops in ops1:
ops['Ly'] = im.shape[1]
ops['Lx'] = im.shape[2]
np.save(ops['ops_path'], ops)
# close all binary files and write ops files
for j in range(0, nplanes):
reg_file[j].close()
if nchannels > 1:
reg_file_chan2[j].close()
return ops1
def load_mask(self, idx, label_type=None):
"""
Load mask image as 1 x height x width integer array of label indices.
The leading singleton dimension is required by the loss.
"""
data = io.imread('{}/full_mask/{}.png'.format(self.dir_, idx))
data = data[np.newaxis, ...]
return data.copy()
def processOneImage(inputPath, outputPath):
image = io.imread(inputPath)
greyImage = rgb2grey(image)
threshold = threshold_otsu(greyImage)
imgout = closing(greyImage > threshold, square(1))
imgout = crop(imgout)
imgout = transform.resize(imgout, (max(imgout.shape), max(imgout.shape)))
io.imsave(outputPath, imgout)
def __getitem__(self, ix):
# cargar la imágen
img = io.imread(self.X[ix])
# aplicar transformaciones
if self.trans:
img = self.trans(image=img)["image"]
return torch.from_numpy(img / 255.).float().permute(
2, 0, 1), torch.tensor(self.y[ix])
def processOneImage(inputPath, outputPath):
image = io.imread(inputPath)
greyImage = rgb2grey(image)
threshold = threshold_otsu(greyImage)
imgout = closing(greyImage > threshold, square(1))
imgout = crop(imgout)
imgout = transform.resize(imgout, (max(imgout.shape), max(imgout.shape)))
io.imsave(outputPath, imgout)
def selective_boxes(filename):
img = io.imread(filename)
img_lbl, regions = selectivesearch.selective_search(img,
scale=500,
sigma=0.8,
min_size=10)
# print len(regions)
candidates = set()
for r in regions:
if r['rect'] in candidates:
continue
if r['size'] < 1000:
continue
x, y, w, h = r['rect']
if w / h > 1.2 or h / w > 1.2:
continue
candidates.add(r['rect'])
fig, ax = plt.subplots(ncols=1, nrows=1, figsize=(6, 6))
ax.imshow(img)
filterd_candidates = candidates.copy()
for c in candidates:
x, y, w, h = c
for _x, _y, _w, _h in candidates:
if x == _x and y == _y and w == _w and h == _h:
continue
if abs(x - _x) < 10 and \
abs(y - _y) < 10 and \
w * h - _w * _h> 0:
filterd_candidates.discard((_x, _y, _w, _h))
# print "candidates_length is", len(candidates)
# print len(filterd_candidates)
npboxes = []
for x, y, w, h in filterd_candidates:
# print x,y,w,h
rect = mpatches.Rectangle((x, y),
w,
h,
fill=False,
edgecolor='red',
linewidth=1)
ax.add_patch(rect)
boxes = [x, y, x + w, y + h]
npboxes.append(boxes)
# fig.savefig('img.png')
return npboxes
def ima(filename, n):
"""
Resizes the image
"""
ims = io.imread(filename)
im = np.float32(ims[n]) / 1024.0
im = transforms.ToPILImage()(torch.tensor(im).unsqueeze_(0))
im = transforms.Resize(resolution)(im)
return im
def __getitem__(self, index):
img_path = os.path.join(self.root_dir, self.annotations.iloc[index, 0])
image = io.imread(img_path)
y_label = torch.tensor(int(self.annotations.iloc[index, 1]))
if self.transform:
image = self.transform(image)
return (image, y_label)
def load_label(self, idx, label_type=None):
"""
Load label image as 1 x height x width integer array of label indices.
The leading singleton dimension is required by the loss.
"""
data = io.imread('{}/output_depth/depth_sph_corr-{}.png'.format(
self.dir_, idx))
data = np.array(data, dtype=np.float32)
data = data[np.newaxis, ...]
return data
def Load_Mask(path, ray_per_image, random_uv):
img = io.imread(path)
output = np.array(
[img[random_uv[1, i], random_uv[0, i]] for i in range(ray_per_image)],
dtype='float32')
output[output < 65535.0 - 1e-04] = 0.0
output[output >= 65535.0 - 1e-04] = 1.0
return output
def __getitem__(self, index):
image_name = str(self.image_dir / self.data_list[index][0] /
(self.data_list[index][1] + ".jpg"))
image = io.imread(image_name)
landmarks = np.array(self.data_list[index][2]).astype("float")
sample = {"image": image, "landmarks": landmarks}
if self.transform:
sample = self.transform(sample)
return sample
def predictImage(img_path, theta_path):
brands = ["audi", "benz", "bmw", "chevrolet", "honda", "lexus", "toyota", "volkswagon"]
processOneImage(img_path, './temp.jpg')
image = io.imread('./temp.jpg')
image = transform.resize(image, (400, 400))
features = np.array([hog(image, orientations=8, pixels_per_cell=(20, 20), cells_per_block=(1, 1))])
thetas = np.transpose(np.load(theta_path))
os.remove('./temp.jpg')
prediction = predict(thetas, features)
return brands[prediction]
def get_saliency_for_deepnet(image_url, sal_url):
salnet = SalNet(specfile, modelfile)
arr_files = glob.glob(image_url + "*.jpg")
for i in range(len(arr_files)):
url_image = arr_files[i]
img = io.imread(url_image)
img = np.asarray(img, dtype='float32')
if len(img.shape) == 2:
img = to_rgb(img)
sal_map = salnet.get_saliency(img)
#saliency = misc.imresize(y,(img.shape[0],img.shape[1]))
aux = url_image.split("/")[-1].split(".")[0]
misc.imsave(sal_url + '/' + aux + '.png', sal_map)
def get_saliency_for_salnet(image_url,sal_url):
salnet = SalNet(specfile,modelfile)
arr_files = glob.glob(image_url+"*.png")
for i in range(len(arr_files)):
url_image = arr_files[i]
img = io.imread(url_image)
img = np.asarray(img, dtype = 'float32')
if len(img.shape) == 2:
img = to_rgb(img)
sal_map = salnet.get_saliency(img)
#saliency = misc.imresize(y,(img.shape[0],img.shape[1]))
aux = url_image.split("/")[-1].split(".")[0]
misc.imsave(sal_url+'/'+aux+'.png', sal_map)
def load_image(self, idx):
"""
Load input image and preprocess for Caffe:
- cast to float
- switch channels RGB -> BGR
- subtract mean
- transpose to channel x height x width order
"""
data = io.imread('{}/train_image/{}.png'.format(self.dir_, idx))
data = np.array(data, dtype=np.float32)
data = data[:, :, ::-1]
data -= self.mean
data = data.transpose((2, 0, 1))
return data
def image_classification_samples(folder='x_train_play'):
'''
Inputs: folder; String type. Folder name of which population you want
to pull samples from.
Returns: 6x (1x6) plots displaying random sample images from each
class of land cover.
'''
cols = [0, 1, 2, 3, 4, 5]
fig, ax = plt.subplots(1, 6, figsize=(15, 15))
for i in cols:
plt.grid(b=None, which='both')
building = io.imread('data/{}/0_building/building{}.png'.format(
folder, np.random.randint(0, 40)))
ax[i].imshow(building)
fig.suptitle('building', x=0.03, y=.5)
fig, ax = plt.subplots(1, 6, figsize=(15, 15))
for i in cols:
barren = io.imread('data/{}/1_barren_land/barren{}.png'.format(
folder, np.random.randint(0, 40)))
ax[i].imshow(barren)
fig.suptitle('barren', x=0.03, y=.5)
fig, ax = plt.subplots(1, 6, figsize=(15, 15))
for i in cols:
tree = io.imread('data/{}/2_tree/tree{}.png'.format(
folder, np.random.randint(0, 40)))
ax[i].imshow(tree)
fig.suptitle('tree', x=0.03, y=.5)
fig, ax = plt.subplots(1, 6, figsize=(15, 15))
for i in cols:
grass = io.imread('data/{}/3_grassland/grassland{}.png'.format(
folder, np.random.randint(0, 40)))
ax[i].imshow(grass)
fig.suptitle('grass', x=0.03, y=.5)
fig, ax = plt.subplots(1, 6, figsize=(15, 15))
for i in cols:
road = io.imread('data/{}/4_road/road{}.png'.format(
folder, np.random.randint(0, 40)))
ax[i].imshow(road)
fig.suptitle('road', x=0.03, y=.5)
fig, ax = plt.subplots(1, 6, figsize=(15, 15))
for i in cols:
water = io.imread('data/{}/5_water/water{}.png'.format(
folder, np.random.randint(0, 40)))
ax[i].imshow(water)
fig.suptitle('water', x=0.03, y=.5)
plt.show()
def prepareImage(imagePath):
""" Prepare images before use it.
"""
print("> Prepare image "+imagePath + ":")
imname = ntpath.basename(imagePath)
imname = imname.split(imname.split('.')[-1])[0][0:-1] # 记录图片basename
img = cv2.imread( imagePath ) # 加载图片
if needCrop:
dlib_img = io.imread(imagePath)
img2 = cv2.copyMakeBorder(img,0,0,0,0,cv2.BORDER_REPLICATE)
detector = dlib.get_frontal_face_detector()
predictor = dlib.shape_predictor(FLAGS.predictor_path) # 加载 dlib 检测
dets = detector(img, 1)
print("> Number of faces detected: {}".format(len(dets)))
if len(dets) == 0:
print '> Could not detect the face, skipping the image...' + image_path
return None
if len(dets) > 1:
print "> Process only the first detected face!"
# 标记第一个人脸
detected_face = dets[0]
cv2.rectangle(img2, (detected_face.left(),detected_face.top()), \
(detected_face.right(),detected_face.bottom()), (0,0,255),2)
fileout = open(os.path.join(FLAGS.tmp_detect , imname + ".bbox"),"w")
fileout.write("%f %f %f %f\n" % (detected_face.left(),detected_face.top(), \
detected_face.right(),detected_face.bottom()))
fileout.close()
## If we are using landmarks to crop
if useLM:
shape = predictor(dlib_img, detected_face)
nLM = shape.num_parts
fileout = open(os.path.join(FLAGS.tmp_detect, imname + ".pts" ), "w")
for i in range(0, nLM):
cv2.circle( img2, (shape.part(i).x, shape.part(i).y), 5, (255,0,0))
fileout.write("%f %f\n" % (shape.part(i).x, shape.part(i).y))
fileout.close()
img = utils.cropByLM(img, shape, img2)
else:
print "> cropByFaceDet "
img = utils.cropByFaceDet(img, detected_face, img2)
cv2.imwrite(os.path.join( FLAGS.tmp_detect, imname+"_detect.png"), img2)
img = cv2.resize(img, (trg_size, trg_size))
cv2.imwrite(os.path.join(FLAGS.tmp_ims, imname + '.png'), img)
return img
def load_depth(self, idx):
"""
Load depth map and preprocess:
- resize
- cast to float
- subtract mean
"""
idx = self.indices_depth[idx]
idx=idx.split()[0]
im = io.imread('{}/depth/{}'.format(self.data_dir, idx))
im = Image.fromarray(im)
im = im.resize((self.width, self.height), Image.ANTIALIAS) # resize
im = np.array(im, dtype=np.float32) # cast to float
d = im
d -= self.mean_depth # mean subtraction
d = d[np.newaxis, ...]
return d
def img_load(filename, args):
# img_raw = tf.io.read_file(filename)
# img = tf.image.decode_image(img_raw)
img = io.imread(filename)
offset_width = 50
offset_height = 10
target_width = 660
target_height = 470
# imgc = tf.image.crop_to_bounding_box(img, offset_height, offset_width, target_height, target_width)
imgc = img[offset_height:target_height, offset_width:target_width]
# # args.img_size = 0.25; args.preserve_aspect_ratio = True; args.rand_box = 0.1
imresize_ = np.multiply(imgc.shape[:2], args.img_size)
# imgcre = tf.image.resize(imgc, size=imresize_)
imgcre = transform.resize(imgc,
output_shape=imresize_.astype(np.int),
preserve_range=True)
return imgcre
def _load_worker(self, sess):
while not self.coord.should_stop():
# dequeue one filename from the file name queue
idx = sess.run(self.fdx_dequeue)
# load the image
X = np.ndarray(self.data_shape)
y = np.ndarray(self.label_shape)
file_path = os.path.join(self.img_dir, self.file_ids[idx] + ".jpg")
X = io.imread(file_path)
y = self.y[idx]
try:
sess.run(self.enqueue, feed_dict={
self.X_holder: X,
self.y_holder: y,
self.idx_holder: idx
})
except tf.errors.CancelledError:
return
def loadimg(self, path):
"""
加载一张图片，将其转化为符合要求的格式
:param path:
:return:
"""
# 读取图片
image = io.imread(path)
# 重新设定图片大小
# image = scipy.misc.imresize(image, [IMAGE_HEIGHT, IMAGE_WIDTH])
image = np.array(
Image.fromarray(image).resize([IMAGE_HEIGHT, IMAGE_WIDTH]))
# 改变数组形状，其实就是把它变成一个batch_size=1的batch
image = np.reshape(image, (1, IMAGE_HEIGHT, IMAGE_WIDTH, 3))
# 减去均值，使其数据分布接近0
image = image - IMAGE_MEAN_VALUE
return image
def load_image(self, idx):
"""
Load input image and preprocess:
- resize
- cast to float
- switch channels RGB -> BGR
- subtract mean
- transpose to channel x height x width order
"""
idx = self.indices[idx]
idx = idx.split()[0]
im = io.imread('{}/{}'.format(self.data_dir, idx))
im = Image.fromarray(im)
im = im.resize((self.width, self.height), Image.ANTIALIAS) # resize image
im = np.array(im, dtype=np.float32) # cast to float
im = im[:,:,::-1] # RGB -> BGR
im -= self.mean_bgr # mean subtraction
im = im.transpose((2,0,1))
return im
def get_saliency_for_juntingnet(image_url,sal_url):
arr_files = glob.glob(image_url+"*.png")
for i in range(len(arr_files)):
url_image = arr_files[i]
image = io.imread(url_image)
img = misc.imresize(image,(96,96))
img = np.asarray(img, dtype = 'float32') / 255.
img = img.transpose(2,0,1).reshape(3, 96, 96)
xt = np.zeros((1, 3, 96, 96), dtype='float32')
xt[0]=img
y = juntingnet.predict(xt)
tmp = y.reshape(48,48)
blured= ndimage.gaussian_filter(tmp, sigma=3)
sal_map = cv2.resize(tmp,(image.shape[1],image.shape[0]))
sal_map -= np.min(sal_map)
sal_map /= np.max(sal_map)
#saliency = misc.imresize(y,(img.shape[0],img.shape[1]))
aux = url_image.split("/")[-1].split(".")[0]
misc.imsave(sal_url+'/'+aux+'.png', sal_map)
def get_saliency_for_shallownet(image_url, sal_url):
arr_files = glob.glob(image_url + "*.jpg")
for i in range(len(arr_files)):
url_image = arr_files[i]
image = io.imread(url_image)
img = misc.imresize(image, (96, 96))
img = np.asarray(img, dtype='float32') / 255.
img = img.transpose(2, 0, 1).reshape(3, 96, 96)
xt = np.zeros((1, 3, 96, 96), dtype='float32')
xt[0] = img
y = juntingnet.predict(xt)
tmp = y.reshape(48, 48)
blured = ndimage.gaussian_filter(tmp, sigma=3)
sal_map = cv2.resize(tmp, (image.shape[1], image.shape[0]))
sal_map -= np.min(sal_map)
sal_map /= np.max(sal_map)
#saliency = misc.imresize(y,(img.shape[0],img.shape[1]))
aux = url_image.split("/")[-1].split(".")[0]
misc.imsave(sal_url + '/' + aux + '.png', sal_map)
defaultextension=".htex")
if(save_file_name is None or file_name == ""):
import sys;
print("User quit without selecting a file");
sys.exit(0);
else:
save_file_name = args.output_file
if frozen_status:
sys.frozen = frozen_status
elif getattr(sys, 'frozen', False):
del sys.frozen
image = io.imread(file_name)/255.0
if len(image.shape) == 2:
image = np.concatenate((image[:,:,None],image[:,:,None],image[:,:,None]),axis=2)
if image.shape[2] > 3:
image = image[:,:,:3]
image_lab = to_color_space(image)
relitive_value = max(image.shape[:2])
#Create a tileset from the image, with the user selecting the scale
if isinstance(args.base_scale,list):
tile_size = max([bsf(relitive_value) for bsf in args.base_scale])
else:
tile_size = args.base_scale(relitive_value)#diffution_system.gui.scale_selector(image);
print("Base Scale Chosen",tile_size)
image_path = image_path[:-1]
print("> Prepare image "+image_path + ":")
imname = ntpath.basename(image_path)
#imname = imname[:-4]
imname = imname.split(imname.split('.')[-1])[0][0:-1]
img = cv2.imread(image_path)
## If we have input landmarks
if len(landmarkDir) > 0:
lms = np.loadtxt(landmarkDir + '/' + imname + '.pts')
img2 = cv2.copyMakeBorder(img,0,0,0,0,cv2.BORDER_REPLICATE)
nLM = lms.shape[0]
for i in range(0,nLM):
cv2.circle(img2, (lms[i,0], lms[i,1]), 5, (255,0,0))
img, lms = utils.cropByInputLM(img, lms, img2)
else:
dlib_img = io.imread(image_path)
img2 = cv2.copyMakeBorder(img,0,0,0,0,cv2.BORDER_REPLICATE)
dets = detector(img, 1)
print("> Number of faces detected: {}".format(len(dets)))
if len(dets) == 0:
print('> Could not detect the face, skipping the image...' + image_path)
continue
if len(dets) > 1:
print("> Process only the first detected face!")
detected_face = dets[0]
## If we are using landmarks to crop
shape = predictor(dlib_img, detected_face)
nLM = shape.num_parts
for i in range(0,nLM):
cv2.circle(img2, (shape.part(i).x, shape.part(i).y), 5, (255,0,0))
img, lms = utils.cropByLM(img, shape, img2)
# hog_image_rescaled = exposure.rescale_intensity(hog_image, in_range=(0, 0.02))
#
# ax2.axis('off')
# ax2.imshow(hog_image_rescaled, cmap=plt.cm.gray)
# ax2.set_title('Histogram of Oriented Gradients')
# ax1.set_adjustable('box-forced')
# plt.show()
# End of hog test
# Feature Extraction for NN
y = np.repeat(y, 30)
features = np.empty([len(y), 3200])
row_count = 0
for image_path in training_sample_paths:
image = io.imread(image_path)
image = transform.resize(image, (400, 400))
for i in range(10):
image_new = image * np.random.normal(1.0, 0.2) + np.random.normal(0, 0.2)
image_new = np.maximum(np.minimum(image, 1.0), 0.0)
image_new_dilation = morphology.dilation(image, morphology.square(2))
image_new_erosion = morphology.erosion(image, morphology.square(2))
features[row_count, :] = hog(image, orientations=8,
pixels_per_cell=(20, 20), cells_per_block=(1, 1))
features[row_count+1, :] = hog(image_new_dilation, orientations=8,
pixels_per_cell=(20, 20), cells_per_block=(1, 1))
features[row_count+2, :] = hog(image_new_erosion, orientations=8,
pixels_per_cell=(20, 20), cells_per_block=(1, 1))
row_count += 3
from skimage import img_as_float
import numpy as np
import matplotlib.pyplot as plt
import sys
#model = '32s'
#model = '16s'
#model = '8s'
model = 'googlenet' ;
rgb = [122.67891434, 116.66876762, 104.00698793]
filename = '/home/vedaldi/src/deep-seg/data/voc11/JPEGImages/2008_000073.jpg'
# read and convert an input image
im = io.imread(filename)
im = img_as_float(im) * 255 ;
im = np.array(im)
im = im - np.array(rgb).reshape([1, 1, 3])
im = im[:,:, ::-1] # RGB -> BGR
im = np.transpose(im,[2,0,1])
im = im.reshape([1] + list(im.shape))
# load Caffe and network
caffe_root = '/home/vedaldi/src/caffe/'
sys.path.insert(0, caffe_root + 'python')
import caffe
if model == '32s':
net = caffe.Classifier('data/tmp/fcn/fcn-32s-pascal-deploy.prototxt',
'data/tmp/fcn/fcn-32s-pascal.caffemodel')
