def test_wrong_relations():
"""docstring for test_wrong_relations"""
# GIVEN a individual with correct family info
sample_info = {
'sample_id': '1',
'sex': 'male',
'phenotype': 'affected',
'mother': '3',
'father': '2'
}
mother_info = {
'sample_id': '3',
'sex': 'female',
'phenotype': 'unaffected',
'mother': '0',
'father': '0'
}
father_info = {
'sample_id': '2',
'sex': 'male',
'phenotype': 'unaffected',
'mother': '0',
'father': '0'
}
samples = [sample_info, mother_info, father_info]
# Nothong should happend here
assert parse_individuals(samples)
# WHEN changing mother id in proband
sample_info['mother'] = '5'
# THEN a PedigreeError should be raised
with pytest.raises(PedigreeError):
parse_individuals(samples)
def test_no_individuals():
# GIVEN a list with no indioviduals
samples = []
# WHEN parsing the individuals
with pytest.raises(PedigreeError):
# THEN error should be raised since a family has to have individuals
parse_individuals(samples)
def test_wrong_relations():
"""docstring for test_wrong_relations"""
# GIVEN a individual with correct family info
sample_info = {
'sample_id': '1',
'sex': 'male',
'phenotype': 'affected',
'mother': '3',
'father': '2'
}
mother_info = {
'sample_id': '3',
'sex': 'female',
'phenotype': 'unaffected',
'mother': '0',
'father': '0'
}
father_info = {
'sample_id': '2',
'sex': 'male',
'phenotype': 'unaffected',
'mother': '0',
'father': '0'
}
samples = [sample_info, mother_info, father_info]
# Nothong should happend here
assert parse_individuals(samples)
# WHEN changing mother id in proband
sample_info['mother'] = '5'
# THEN a PedigreeError should be raised
with pytest.raises(PedigreeError):
parse_individuals(samples)
def test_wrong_relations():
"""docstring for test_wrong_relations"""
# GIVEN a individual with correct family info
sample_info = {
"sample_id": "1",
"sex": "male",
"phenotype": "affected",
"mother": "3",
"father": "2",
}
mother_info = {
"sample_id": "3",
"sex": "female",
"phenotype": "unaffected",
"mother": "0",
"father": "0",
}
father_info = {
"sample_id": "2",
"sex": "male",
"phenotype": "unaffected",
"mother": "0",
"father": "0",
}
samples = [sample_info, mother_info, father_info]
# Nothong should happend here
assert parse_individuals(samples)
# WHEN changing mother id in proband
sample_info["mother"] = "5"
# THEN a PedigreeError should be raised
with pytest.raises(PedigreeError):
parse_individuals(samples)
def test_no_individuals():
# GIVEN a list with no indioviduals
samples = []
# WHEN parsing the individuals
with pytest.raises(PedigreeError):
# THEN error should be raised since a family has to have individuals
parse_individuals(samples)