def test_is_likely_pathogenic_4():
"""First criterias for pathogenic:
Pathogenic
(iv) ≥3 Moderate (PM1–PM6) OR
"""
# GIVEN values that fulfill the (1) criteria for likely pathogenic
pvs = False
ps_terms = []
pm_terms = ["PM1", "PM2", "PM3"]
pp_terms = []
## WHEN performing the evaluation
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
## THEN assert the criterias are fullfilled
assert res
pm_terms = ["PM1", "PM2"]
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
assert not res
def test_is_likely_pathogenic_6():
"""First criterias for pathogenic:
Pathogenic
(vi) 1 Moderate (PM1–PM6) AND ≥4 supportin (PP1–PP5)
"""
# GIVEN values that fulfill the (vi) criteria for likely pathogenic
pvs = False
ps_terms = []
pm_terms = ["PM1"]
pp_terms = ["PP1", "PP2", "PP3", "PP4"]
## WHEN performing the evaluation
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
## THEN assert the criterias are fullfilled
assert res
pp_terms = ["PP1", "PP2", "PP3"]
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
assert not res
def test_is_likely_pathogenic_2():
"""First criterias for pathogenic:
Pathogenic
(ii) 1 Strong (PS1–PS4) AND 1–2 moderate (PM1–PM6) OR
"""
# GIVEN values that fulfill the (1) criteria for likely pathogenic
pvs = False
ps_terms = ["PS1"]
pm_terms = ["PM1"]
pp_terms = []
## WHEN performing the evaluation
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
## THEN assert the criterias are fullfilled
assert res
ps_terms = []
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
assert not res
def test_is_likely_pathogenic_3():
"""First criterias for pathogenic:
Pathogenic
(iii) 1 Strong (PS1–PS4) AND ≥2 supporting (PP1–PP5) OR
"""
# GIVEN values that fulfill the (1) criteria for likely pathogenic
pvs = False
ps_terms = ["PS1"]
pm_terms = []
pp_terms = ["PP1", "PP2"]
## WHEN performing the evaluation
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
## THEN assert the criterias are fullfilled
assert res
pp_terms = ["PP1"]
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
assert not res
def test_is_likely_pathogenic_5():
"""First criterias for pathogenic:
Pathogenic
(v) 2 Moderate (PM1–PM6) AND ≥2 supporting (PP1–PP5) OR
"""
# GIVEN values that fulfill the (1) criteria for likely pathogenic
pvs = False
ps_terms = []
pm_terms = ['PM1', 'PM2']
pp_terms = ['PP1', 'PP2']
## WHEN performing the evaluation
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
## THEN assert the criterias are fullfilled
assert res
pp_terms = ['PP1']
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
assert not res
def test_is_likely_pathogenic_1():
"""First criterias for pathogenic:
Pathogenic
(i) 1 Very strong (PVS1) AND 1 moderate (PM1– PM6)
"""
# GIVEN values that fulfill the (1) criteria for likely pathogenic
pvs = True
ps_terms = []
pm_terms = ["PM1"]
pp_terms = []
## WHEN performing the evaluation
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
## THEN assert the criterias are fullfilled
assert res
pm_terms = []
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
assert not res
def test_is_likely_pathogenic_6():
"""First criterias for pathogenic:
Pathogenic
(vi) 1 Moderate (PM1–PM6) AND ≥4 supportin (PP1–PP5)
"""
# GIVEN values that fulfill the (vi) criteria for likely pathogenic
pvs = False
ps_terms = []
pm_terms = ['PM1']
pp_terms = ['PP1', 'PP2', 'PP3', 'PP4']
## WHEN performing the evaluation
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
## THEN assert the criterias are fullfilled
assert res
pp_terms = ['PP1', 'PP2', 'PP3']
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
assert not res
def test_is_likely_pathogenic_4():
"""First criterias for pathogenic:
Pathogenic
(iv) ≥3 Moderate (PM1–PM6) OR
"""
# GIVEN values that fulfill the (1) criteria for likely pathogenic
pvs = False
ps_terms = []
pm_terms = ['PM1','PM2','PM3']
pp_terms = []
## WHEN performing the evaluation
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
## THEN assert the criterias are fullfilled
assert res
pm_terms = ['PM1','PM2']
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
assert not res
def test_is_likely_pathogenic_3():
"""First criterias for pathogenic:
Pathogenic
(iii) 1 Strong (PS1–PS4) AND ≥2 supporting (PP1–PP5) OR
"""
# GIVEN values that fulfill the (1) criteria for likely pathogenic
pvs = False
ps_terms = ['PS1']
pm_terms = []
pp_terms = ['PP1','PP2']
## WHEN performing the evaluation
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
## THEN assert the criterias are fullfilled
assert res
pp_terms = ['PP1']
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
assert not res
def test_is_likely_pathogenic_2():
"""First criterias for pathogenic:
Pathogenic
(ii) 1 Strong (PS1–PS4) AND 1–2 moderate (PM1–PM6) OR
"""
# GIVEN values that fulfill the (1) criteria for likely pathogenic
pvs = False
ps_terms = ['PS1']
pm_terms = ['PM1']
pp_terms = []
## WHEN performing the evaluation
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
## THEN assert the criterias are fullfilled
assert res
ps_terms = []
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
assert not res
def test_is_likely_pathogenic_1():
"""First criterias for pathogenic:
Pathogenic
(i) 1 Very strong (PVS1) AND 1 moderate (PM1– PM6)
"""
# GIVEN values that fulfill the (1) criteria for likely pathogenic
pvs = True
ps_terms = []
pm_terms = ['PM1']
pp_terms = []
## WHEN performing the evaluation
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
## THEN assert the criterias are fullfilled
assert res
pm_terms = []
res = is_likely_pathogenic(pvs, ps_terms, pm_terms, pp_terms)
assert not res