async def setUpAsync(self):
await super().setUpAsync()
async with self.app['engine'].acquire() as connection:
self.consumer_ip = get_ip(self.app)
self.consumer_port = '8000'
await connection.execute(Consumer.insert().values(
ip=self.consumer_ip,
status='avaiable',
port=self.consumer_port))
self.job_id = str(uuid.uuid4())
await connection.execute(Job.insert().values(
id=self.job_id,
query='AACAGCATGAGTGCGCTGGATGCTG',
submitted=datetime.datetime.now(),
status=JOB_STATUS_CHOICES.started))
self.job_chunk_id = await connection.scalar(
JobChunk.insert().values(
job_id=self.job_id,
database='mirbase',
submitted=datetime.datetime.now(),
status=JOB_CHUNK_STATUS_CHOICES.started,
consumer=self.consumer_ip))
async def setUpAsync(self):
await super().setUpAsync()
consumer_ip = get_ip(self.app)
async with self.app['engine'].acquire() as connection:
await connection.execute(Job.insert().values(
id=self.job_id,
query='AACAGCATGAGTGCGCTGGATGCTG',
description='CATE_ECOLI',
submitted=datetime.datetime.now(),
status=JOB_STATUS_CHOICES.started))
async with self.app['engine'].acquire() as connection:
await connection.execute(Consumer.insert().values(
ip=consumer_ip, status='avaiable', port='8000'))
async def setUpAsync(self):
await super().setUpAsync()
self.consumer_ip = get_ip(self.app)
async with self.app['engine'].acquire() as connection:
await connection.execute(Job.insert().values(
id=self.job_id,
query=
'AGUUACGGCCAUACCUCAGAGAAUAUACCGUAUCCCGUUCGAUCUGCGAAGUUAAGCUCUGAAGGGCGUCGUCAGUACUAUAGUGGGUGACCAUAUGGGAAUACGACGUGCUGUAGCUU',
submitted=datetime.datetime.now(),
status=JOB_STATUS_CHOICES.started))
async with self.app['engine'].acquire() as connection:
await connection.execute(InfernalJob.insert().values(
job_id=self.job_id, ))
async def test_set_consumer_to_infernal_job(self):
await save_infernal_job(self.app['engine'],
self.job_id,
priority='low')
consumer = get_ip(self.app)
await set_consumer_to_infernal_job(self.app['engine'], self.job_id,
consumer)
async with self.app['engine'].acquire() as connection:
query = sa.text('''
SELECT consumer
FROM infernal_job
WHERE job_id=:job_id
''')
async for row in await connection.execute(query,
job_id=self.job_id):
assert row.consumer == consumer
break
async def test_register_consumer_in_the_database(self):
await register_consumer_in_the_database(self.app)
consumer_ip = get_ip(self.app)
consumer = await get_consumer_status(self.app['engine'], consumer_ip)
assert consumer == CONSUMER_STATUS_CHOICES.available